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Galactose oxidase, central domain superfamily domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
1gofA   3.22e-48   153-535   Galactose oxidase, central domain  
1k3iA   3.51e-48   170-552   Galactose oxidase, central domain  
1t2xA   2.78e-48   153-535   Galactose oxidase, central domain  
2eibA   2.64e-48   153-535   Galactose oxidase, central domain  
2eicA   3.66e-48   153-535   Galactose oxidase, central domain  
2eidA   1.61e-48   153-535   Galactose oxidase, central domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   74982 74982
No Yes Homo sapiens 76_38 Human 24 22
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 8 7
No Yes Gorilla gorilla 76_3.1 Western gorilla 17 15
No Yes Pongo abelii 76_2 Sumatran orangutan 12 11
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 8 8
No Yes Papio anubis 76 Olive baboon 8 7
No Yes Macaca mulatta 76_1 Rhesus monkey 15 14
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 15 15
No Yes Otolemur garnettii 76_3 Small-eared galago 6 6
No Yes Microcebus murinus 76_1 Gray mouse lemur 7 6
No Yes Rattus norvegicus 76_5.0 Norway rat 13 12
No Yes Mus musculus 76_38 House mouse 17 17
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 8 8
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 13 12
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 8 6
No Yes Cavia porcellus 76_3 Domestic guinea pig 7 6
No Yes Oryctolagus cuniculus 76_2 Rabbit 8 7
No Yes Ochotona princeps 76 American pika 5 5
No Yes Tupaia belangeri 76 Northern tree shrew 9 9
No Yes Sus scrofa 76_10.2 Pig 11 10
No Yes Bos taurus 76_3.1 Cattle 14 12
No Yes Ovis aries 76_3.1 Sheep 11 10
No Yes Vicugna pacos 76_1 Alpaca 6 5
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 9 8
No Yes Mustela putorius furo 76_1.0 Domestic ferret 8 8
No Yes Ailuropoda melanoleuca 76_1 Giant panda 11 10
No Yes Canis familiaris 76_3.1 Dog 12 10
No Yes Felis catus 76_6.2 Domestic cat 8 7
No Yes Equus caballus 76_2 Horse 8 7
No Yes Myotis lucifugus 76_2.0 Little brown bat 11 9
No Yes Pteropus vampyrus 76_1 Large flying fox 7 7
No Yes Sorex araneus 76_1 European shrew 7 6
No Yes Erinaceus europaeus 76 Western European hedgehog 6 6
No Yes Procavia capensis 76_1 Cape rock hyrax 11 10
No Yes Loxodonta africana 76_3 African savanna elephant 17 16
No Yes Echinops telfairi 76 Small Madagascar hedgehog 6 6
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 11 10
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 5 4
No Yes Macropus eugenii 76_1.0 Tammar wallaby 4 4
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 14 12
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 9 8
No Yes Ornithorhynchus anatinus 76_5 Platypus 13 12
No Yes Saccoglossus kowalevskii v3.0   36 32
No Yes Petromyzon marinus 76_7.0 Sea lamprey 4 3
No Yes Meleagris gallopavo 76_2 Turkey 12 11
No Yes Gallus gallus 76_4 Chicken 12 11
No Yes Anas platyrhynchos 76_1.0 Mallard 9 8
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 11 11
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 8 8
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 11 10
No Yes Anolis carolinensis 76_2.0 Green anole 8 8
No Yes Xenopus laevis African clawed frog 43 41
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 14 14
No Yes Latimeria chalumnae 76_1 Coelacanth 13 12
No Yes Lepisosteus oculatus 76 Spotted gar 11 9
No Yes Gadus morhua 76_1 Atlantic cod 7 6
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 14 13
No Yes Takifugu rubripes 76_4 Torafugu 22 19
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 15 13
No Yes Oryzias latipes 76_1 Japanese medaka 7 6
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 15 13
No Yes Poecilia formosa 76 Amazon molly 15 14
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 16 15
No Yes Astyanax mexicanus 76 Mexican tetra 11 10
No Yes Danio rerio 76_9 Zebrafish 11 11
No Yes Oikopleura dioica   123 120
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 8 8
No Yes Ciona intestinalis 76 Vase tunicate 8 8
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 16 15
No Yes Adineta vaga   170 135
No Yes Octopus bimaculoides 280   8 7
No Yes Crassostrea gigas 22 Pacific oyster 12 11
No Yes Lottia gigantea Owl limpet 11 10
No Yes Helobdella robusta   5 5
No Yes Capitella sp. I   17 16
No Yes Danaus plexippus OGS1.0 Monarch butterfly 6 6
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 5 5
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 10 10
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 3 3
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 3 3
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 3 3
No Yes Atta cephalotes v1.1   4 4
No Yes Camponotus floridanus v3.3 Florida carpenter ant 3 3
No Yes Lucilia cuprina Australian sheep blowfly 3 3
No Yes Drosophila grimshawi 1.3   9 9
No Yes Drosophila willistoni 1.3   4 4
No Yes Drosophila pseudoobscura 2.13   2 2
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila suzukii   2 2
No Yes Drosophila yakuba 1.3   5 5
No Yes Drosophila simulans 1.3   4 4
No Yes Drosophila sechellia 1.3   3 3
No Yes Drosophila melanogaster 76_5 Fruit fly 5 5
No Yes Drosophila erecta 1.3   2 2
No Yes Drosophila ananassae 1.3   4 4
No Yes Drosophila virilis 1.2   3 3
No Yes Drosophila mojavensis 1.3   4 4
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 4 4
No Yes Culex pipiens quinquefasciatus Southern house mosquito 3 2
No Yes Anopheles darlingi 22 American malaria mosquito 6 6
No Yes Anopheles gambiae 49_3j African malaria mosquito 4 4
No Yes Tribolium castaneum 3.0 Red flour beetle 5 5
No Yes Pediculus humanus corporis (Early assembly) Human body louse 7 7
No Yes Acyrthosiphon pisum Pea aphid 39 33
No Yes Rhodnius prolixus 22   6 6
No Yes Daphnia pulex Common water flea 4 4
No Yes Strigamia maritima 22   9 9
No Yes Sarcoptes scabiei   2 2
No Yes Tetranychus urticae Two-spotted spider mite 11 10
No Yes Ixodes scapularis (Preliminary) Black-legged tick 2 2
No Yes Pristionchus pacificus   5 5
No Yes Meloidogyne incognita Southern root-knot nematode 2 2
No Yes Meloidogyne hapla   4 3
No Yes Onchocerca volvulus 22   3 3
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis japonica   6 5
No Yes Caenorhabditis brenneri   6 5
No Yes Caenorhabditis remanei   6 6
No Yes Caenorhabditis elegans 76_235 Roundworm 8 5
No Yes Caenorhabditis briggsae 2   5 5
No Yes Trichinella spiralis 22   9 9
No Yes Hymenolepis microstoma   4 4
No Yes Echinococcus multilocularis   3 3
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   3 3
No Yes Mnemiopsis leidyi Sea walnut 7 7
No Yes Thelohanellus kitauei   29 29
No Yes Acropora digitifera v1.0   7 7
No Yes Nematostella vectensis 1.0 Starlet sea anemone 14 12
No Yes Hydra vulgaris   7 6
No Yes Amphimedon queenslandica   99 95
No Yes Trichoplax adhaerens   5 5
No Yes Proterospongia sp. ATCC 50818   35 34
No Yes Monosiga brevicollis   14 12
No Yes Sphaeroforma arctica JP610   5 4
No Yes Capsaspora owczarzaki ATCC 30864   4 4
No Yes Conidiobolus coronatus NRRL28638 v1.0   10 9
No Yes Mortierella verticillata NRRL 6337   34 34
No Yes Phycomyces blakesleeanus   18 16
No Yes Rhizopus oryzae RA 99-880   10 9
No Yes Mucor circinelloides   17 14
No Yes Rhizomucor miehei CAU432   5 5
No Yes Malassezia globosa CBS 7966   4 4
No Yes Sporisorium reilianum 22   7 5
No Yes Ustilago maydis   9 7
No Yes Mixia osmundae IAM 14324 v1.0   8 5
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   6 5
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   6 5
No Yes Melampsora laricis-populina   6 6
No Yes Rhodotorula graminis WP1 v1.0   6 5
No Yes Sporobolomyces roseus IAM 13481   4 4
No Yes Microbotryum violaceum 22   11 10
No Yes Wallemia sebi v1.0   2 2
No Yes Sphaerobolus stellatus v1.0   13 12
No Yes Piloderma croceum F 1598 v1.0   13 11
No Yes Serpula lacrymans var. lacrymans S7.9   4 4
No Yes Coniophora puteana   10 8
No Yes Hydnomerulius pinastri v2.0   10 9
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   7 7
No Yes Pisolithus microcarpus 441 v1.0   7 7
No Yes Pisolithus tinctorius Marx 270 v1.0   8 7
No Yes Scleroderma citrinum Foug A v1.0   9 9
No Yes Coprinopsis cinerea okayama7 130 v3   11 9
No Yes Pleurotus ostreatus Oyster mushroom 18 17
No Yes Amanita thiersii Skay4041 v1.0   9 8
No Yes Amanita muscaria Koide v1.0 Fly agaric 7 6
No Yes Galerina marginata v1.0   21 20
No Yes Hebeloma cylindrosporum h7 v2.0   12 10
No Yes Laccaria bicolor S238N-H82   16 15
No Yes Agaricus bisporus var. bisporus   10 10
No Yes Schizophyllum commune   4 4
No Yes Stereum hirsutum FP-91666 SS1 v1.0   9 9
No Yes Heterobasidion annosum   7 7
No Yes Gloeophyllum trabeumv1.0   2 2
No Yes Punctularia strigosozonata v1.0   12 11
No Yes Sebacina vermifera MAFF 305830 v1.0   13 12
No Yes Fomitiporia mediterranea v1.0   9 7
No Yes Tulasnella calospora AL13/4D v1.0   7 7
No Yes Postia placenta   11 9
No Yes Wolfiporia cocos MD-104 SS10 v1.0   5 5
No Yes Fomitopsis pinicolav1.0   9 7
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   9 7
No Yes Phanerochaete chrysosporium RP-78 2.1   9 9
No Yes Dichomitus squalens   13 11
No Yes Trametes versicolor v1.0   11 11
No Yes Tremella mesenterica Witches' butter 3 3
No Yes Daldinia eschscholzii EC12 v1.0   7 7
No Yes Apiospora montagnei NRRL 25634 v1.0   13 12
No Yes Magnaporthe poae ATCC 64411 22   17 15
No Yes Magnaporthe grisea 70-15   22 21
No Yes Podospora anserina   19 16
No Yes Sporotrichum thermophile ATCC 42464   8 8
No Yes Thielavia terrestris NRRL 8126   7 6
No Yes Chaetomium globosum CBS 148.51   9 9
No Yes Neurospora tetrasperma   10 10
No Yes Neurospora discreta FGSC 8579   11 11
No Yes Neurospora crassa OR74A   10 9
No Yes Cryphonectria parasitica Chestnut blight fungus 9 8
No Yes Verticillium albo-atrum VaMs.102   7 7
No Yes Verticillium dahliae VdLs.17   11 11
No Yes Acremonium alcalophilumv 1.0   8 7
No Yes Glomerella graminicola 22   13 13
No Yes Fusarium graminearum   14 13
No Yes Nectria haematococca mpVI   12 11
No Yes Fusarium oxysporum f. sp. lycopersici 4286   17 16
No Yes Fusarium verticillioides 7600   18 17
No Yes Trichoderma asperellum CBS 433.97 v1.0   5 5
No Yes Trichoderma atroviride   5 5
No Yes Trichoderma citrinoviride v1.0   5 5
No Yes Trichoderma reesei 1.2   6 6
No Yes Trichoderma virens Gv29-8   7 6
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   6 5
No Yes Trichoderma harzianum CBS 226.95 v1.0   5 5
No Yes Amorphotheca resinae v1.0 Creosote fungus 4 4
No Yes Botrytis cinerea B05.10   12 12
No Yes Sclerotinia sclerotiorum   12 11
No Yes Blumeria graminis 22   4 4
No Yes Didymella exigua CBS 183.55 v1.0   12 11
No Yes Leptosphaeria maculans 22   9 9
No Yes Setosphaeria turcica v1.0   8 8
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   11 11
No Yes Cochliobolus victoriae FI3 v1.0   11 11
No Yes Cochliobolus carbonum 26-R-13 v1.0   11 11
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 7 7
No Yes Alternaria brassicicola   9 9
No Yes Cochliobolus lunatus m118 v2.0   11 11
No Yes Pyrenophora teres f. teres 22   7 7
No Yes Pyrenophora tritici-repentis   10 10
No Yes Stagonospora nodorum   14 13
No Yes Mycosphaerella graminicola IPO323   3 3
No Yes Zasmidium cellare ATCC 36951 v1.0   10 10
No Yes Dothistroma septosporum   7 7
No Yes Septoria musiva v1.0   4 4
No Yes Mycosphaerella fijiensis CIRAD86   7 7
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   4 3
No Yes Paracoccidioides brasiliensis Pb18   7 7
No Yes Coccidioides posadasii RMSCC 3488   8 7
No Yes Coccidioides immitis RS   8 7
No Yes Ajellomyces dermatitidis SLH14081   6 6
No Yes Histoplasma capsulatum class NAmI strain WU24   4 4
No Yes Microsporum canis CBS 113480   8 7
No Yes Trichophyton equinum CBS 127.97   7 7
No Yes Trichophyton verrucosum HKI 0517   7 7
No Yes Arthroderma benhamiae CBS 112371   7 7
No Yes Trichophyton tonsurans CBS 112818   8 8
No Yes Trichophyton rubrum CBS 118892   7 7
No Yes Uncinocarpus reesii 1704   8 7
No Yes Aspergillus zonatus v1.0   4 3
No Yes Penicillium chrysogenum Wisconsin 54-1255   9 8
No Yes Penicillium chrysogenum v1.0   11 10
No Yes Aspergillus acidus v1.0   4 3
No Yes Aspergillus fumigatus Af293   8 7
No Yes Aspergillus brasiliensis v1.0   5 4
No Yes Aspergillus nidulans FGSC A4   3 3
No Yes Aspergillus sydowii v1.0   7 6
No Yes Aspergillus versicolor v1.0   7 6
No Yes Aspergillus glaucus   7 6
No Yes Aspergillus carbonarius ITEM 5010   6 5
No Yes Neosartorya fischeri NRRL 181   8 7
No Yes Aspergillus terreus NIH2624   7 6
No Yes Aspergillus tubingensis v1.0   5 4
No Yes Aspergillus wentii v1.0   6 5
No Yes Aspergillus oryzae RIB40   9 8
No Yes Aspergillus niger 22   5 4
No Yes Aspergillus niger ATCC 1015   6 5
No Yes Aspergillus flavus NRRL3357   7 7
No Yes Aspergillus clavatus NRRL 1   7 6
No Yes Penicillium marneffei ATCC 18224   13 12
No Yes Tuber melanosporum Mel28 22   2 2
No Yes Tuber melanosporum Vittad Perigord truffle 21 21
No Yes Hansenula polymorpha v2.0   1 1
No Yes Dekkera bruxellensis CBS 2499 v2.0   1 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   1 1
No Yes Candida dubliniensis CD36   1 1
No Yes Candida tropicalis MYA-3404   1 1
No Yes Candida albicans SC5314   1 1
No Yes Pichia stipitis CBS 6054   2 2
No Yes Candida guilliermondii ATCC 6260   2 2
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   1 1
No Yes Debaromyces hansenii   2 2
No Yes Wickerhamomyces anomalus   1 1
No Yes Pichia pastoris GS115   3 3
No Yes Yarrowia lipolytica CLIB122   3 3
No Yes Candida lusitaniae ATCC 42720   2 2
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   2 2
No Yes Vanderwaltozyma polyspora DSM 70294   2 2
No Yes Candida glabrata CBS138   3 2
No Yes Kluyveromyces thermotolerans CBS 6340   4 3
No Yes Lachancea kluyveri   1 1
No Yes Kluyveromyces waltii   3 3
No Yes Ashbya gossypii ATCC 10895   2 2
No Yes Zygosaccharomyces rouxii   2 2
No Yes Saccharomyces mikatae MIT   4 3
No Yes Saccharomyces paradoxus MIT   4 3
No Yes Saccharomyces cerevisiae 76 Baker's yeast 3 2
No Yes Saccharomyces bayanus MIT   3 2
No Yes Schizosaccharomyces cryophilus OY26 22   3 3
No Yes Schizosaccharomyces octosporus yFS286   3 3
No Yes Schizosaccharomyces japonicus yFS275   3 2
No Yes Schizosaccharomyces pombe Fission yeast 2 2
No Yes Catenaria anguillulae PL171 v1.0   8 8
No Yes Allomyces macrogynus ATCC 38327   15 15
No Yes Spizellomyces punctatus DAOM BR117   6 6
No Yes Dictyostelium discoideum   8 8
No Yes Dictyostelium purpureum   11 11
No Yes Entamoeba invadens 1.2   1 1
No Yes Selaginella moellendorffii   65 59
No Yes Pinus taeda Loblolly pine 41 40
No Yes Picea abies Norway spruce 38 38
No Yes Eucalyptus grandis v201 Rose gum 47 44
No Yes Theobroma cacao B97-61/B2 v1 Cacao 38 37
No Yes Gossypium raimondii v221   86 84
No Yes Citrus clementina v165   41 40
No Yes Citrus sinensis v154 Sweet orange 56 53
No Yes Thellungiella halophila v173   82 81
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 120 116
No Yes Capsella rubella v183   105 103
No Yes Arabidopsis lyrata Lyrate rockcress 109 106
No Yes Arabidopsis thaliana 10 Thale cress 104 102
No Yes Carica papaya Papaya 16 16
No Yes Medicago truncatula Barrel medic 136 136
No Yes Phaseolus vulgaris v186 French bean 47 43
No Yes Glycine max v109 Soybean 60 57
No Yes Cucumis sativus v122 Cucumber 24 23
No Yes Fragaria vesca Wild strawberry 85 84
No Yes Malus domestica v196 Apple 53 53
No Yes Prunus persica v139 Peach 40 39
No Yes Linum usitatissimum v200 Flax 50 50
No Yes Manihot esculenta v147 Cassava 38 38
No Yes Populus trichocarpa v156 Black cottonwood 46 46
No Yes Vitis vinifera Wine grape 21 21
No Yes Mimulus guttatus v140 Spotted monkey flower 76 76
No Yes Solanum lycopersicum v.2.3 Tomato 32 32
No Yes Solanum tuberosum Potato 76 76
No Yes Actinidia chinensis Hongyang   37 36
No Yes Aquilegia coerulea v195   80 80
No Yes Triticum urartu 22   48 48
No Yes Triticum aestivum 22 Bread wheat 46 46
No Yes Aegilops tauschii 22   74 74
No Yes Brachypodium distachyon Stiff brome 37 37
No Yes Oryza barthii 22 African wild rice 39 39
No Yes Oryza meridionalis 22   47 47
No Yes Oryza glumaepatula 22   60 60
No Yes Oryza glaberrima African rice 36 35
No Yes Oryza punctata 22   34 34
No Yes Oryza nivara 22   51 51
No Yes Oryza brachyantha 22 Malo sina 28 27
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 52 52
No Yes Oryza sativa v193 Rice 52 52
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 32 32
No Yes Panicum virgatum v202 Switchgrass 89 89
No Yes Setaria italica v164 Foxtail millet 59 59
No Yes Zea mays subsp. mays Maize 50 50
No Yes Zea mays v181 Maize 54 54
No Yes Sorghum bicolor Sorghum 49 48
No Yes Musa balbisiana Balbis banana 32 32
No Yes Musa acuminata 22 Wild Malaysian banana 25 23
No Yes Amborella trichopoda 22   31 30
No Yes Physcomitrella patens   50 50
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 2
No Yes Asterochloris sp. Cgr/DA1pho v1.0   4 4
No Yes Chlorella variabilis sp. NC64A   6 5
No Yes Chlorella vulgaris   2 2
No Yes Volvox carteri f. nagariensis   15 14
No Yes Volvox carteri v199   15 14
No Yes Chlamydomonas reinhardtii 4.0   24 24
No Yes Ostreococcus sp. RCC809   6 6
No Yes Ostreococcus lucimarinus CCE9901   3 3
No Yes Ostreococcus tauri   4 4
No Yes Bathycoccus prasinos   6 6
No Yes Micromonas sp. RCC299   12 10
No Yes Micromonas pusilla CCMP1545 v3.0   15 10
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   10 10
No Yes Bigelowiella natans CCMP2755 22   31 30
No Yes Giardia lamblia 2.3   2 2
No Yes Cyanophora paradoxa   24 24
No Yes Leishmania mexicana 2.4   6 6
No Yes Leishmania major strain Friedlin   5 5
No Yes Leishmania infantum JPCM5 2.4   5 5
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   4 4
No Yes Trypanosoma vivax   2 2
No Yes Trypanosoma cruzi strain CL Brener   9 9
No Yes Trypanosoma congolense 2.4   4 4
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Ectocarpus siliculosus   5 5
No Yes Aureococcus anophagefferens   20 17
No Yes Pythium iwayamai DAOM BR242034 22   8 8
No Yes Pythium arrhenomanes ATCC 12531 22   5 5
No Yes Pythium ultimum v1.7-2   4 4
No Yes Pythium aphanidermatum DAOM BR444 22   8 7
No Yes Pythium irregulare DAOM BR486 22   5 5
No Yes Pythium vexans DAOM BR484 22   8 8
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 9 8
No Yes Phytophthora sojae 1.1   6 6
No Yes Phytophthora infestans T30-4   16 16
No Yes Phytophthora capsici   5 5
No Yes Hyaloperonospora arabidopsidis 22   2 2
No Yes Phaeodactylum tricornutumCCAP 1055/1   13 11
No Yes Fragilariopsis cylindrus   11 11
No Yes Thalassiosira pseudonana CCMP1335   10 10
No Yes Perkinsus marinus ATCC 50983   7 7
No Yes Paramecium tetraurelia   31 30
No Yes Tetrahymena thermophila SB210 1   11 10
No Yes Ichthyophthirius multifiliis strain G5   9 8
No Yes Cryptosporidium muris   1 1
No Yes Neospora caninum   5 4
No Yes Toxoplasma gondii VEG   4 4
No Yes Toxoplasma gondii ME49   4 4
No Yes Toxoplasma gondii GT1   4 4
No Yes Babesia bovis T2Bo   2 2
No Yes Theileria parva   1 1
No Yes Theileria annulata   1 1
No Yes Plasmodium falciparum 3D7   7 6
No Yes Plasmodium vivax SaI-1 7.0   4 3
No Yes Plasmodium knowlesi strain H   6 5
No Yes Plasmodium yoelii ssp. yoelii 1   3 3
No Yes Plasmodium chabaudi   4 4
No Yes Plasmodium berghei ANKA   6 6
No Yes Symbiodinium minutum clade B1 v1.2   38 35
No Yes Naegleria gruberi   19 19
No Yes Trichomonas vaginalis   2 2
No Yes Guillardia theta CCMP2712 v1.0   20 18
No Yes Emiliania huxleyi CCMP1516   12 12
No Yes Thermobaculum terrenum ATCC BAA-798   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Gloeocapsa sp. PCC 7428   2 2
No Yes Gloeobacter violaceus PCC 7421   2 2
No Yes Rivularia sp. PCC 7116   3 3
No Yes Calothrix sp. PCC 7507   1 1
No Yes Anabaena variabilis ATCC 29413   2 2
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   2 2
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   2 1
No Yes Conexibacter woesei DSM 14684   2 1
No Yes Eggerthella sp. YY7918   3 3
No Yes Ilumatobacter coccineus   1 1
No Yes Nakamurella multipartita DSM 44233   1 1
No Yes Modestobacter marinus   1 1
No Yes Frankia symbiont of Datisca glomerata   2 2
No Yes Frankia sp. EAN1pec   2 2
No Yes Frankia alni ACN14a   3 3
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Streptomyces coelicolor A3(2)   2 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   4 2
No Yes Streptomyces bingchenggensis BCW-1   4 3
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Streptomyces avermitilis MA-4680   3 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 1
No Yes Streptomyces scabiei 87.22   3 2
No Yes Kribbella flavida DSM 17836   4 4
No Yes Actinoplanes sp. N902-109   3 3
No Yes Actinoplanes sp. SE50/110   5 5
No Yes Actinoplanes missouriensis 431   4 2
No Yes Rhodococcus opacus B4   1 1
No Yes Mycobacterium sp. JLS   2 1
No Yes Mycobacterium intracellulare ATCC 13950   1 1
No Yes Mycobacterium avium 104   1 1
No Yes Mycobacterium vanbaalenii PYR-1   2 1
No Yes Mycobacterium rhodesiae NBB3   2 1
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   1 1
No Yes Anaerolinea thermophila UNI-1   1 1
No Yes Herpetosiphon aurantiacus DSM 785   8 5
No Yes Roseiflexus sp. RS-1   4 4
No Yes Roseiflexus castenholzii DSM 13941   2 2
No Yes Chloroflexus sp. MS-G   1 1
No Yes Chloroflexus aggregans DSM 9485   2 2
No Yes Truepera radiovictrix DSM 17093   3 3
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Marinithermus hydrothermalis DSM 14884   1 1
No Yes Meiothermus silvanus DSM 9946   1 1
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes Eubacterium eligens ATCC 27750   1 1
No Yes Clostridium sp. BNL1100   3 3
No Yes Clostridium tetani E88   1 1
No Yes Caldicellulosiruptor owensensis OL   1 1
No Yes Paenibacillus sp. JDR-2   2 2
No Yes Melioribacter roseus P3M   2 1
No Yes Ignavibacterium album JCM 16511   1 1
No Yes Chloroherpeton thalassium ATCC 35110   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   5 4
No Yes Niastella koreensis GR20-10   4 4
No Yes Salinibacter ruber M8   2 2
No Yes Rhodothermus marinus DSM 4252   2 2
No Yes Fibrella aestuarina   1 1
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Cytophaga hutchinsonii ATCC 33406   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Paludibacter propionicigenes WB4   3 3
No Yes Bacteroides thetaiotaomicron VPI-5482   3 3
No Yes Bacteroides fragilis YCH46   1 1
No Yes Fluviicola taffensis DSM 16823   1 1
No Yes Owenweeksia hongkongensis DSM 17368   3 2
No Yes Zunongwangia profunda SM-A87   1 1
No Yes Lacinutrix sp. 5H-3-7-4   1 1
No Yes Zobellia galactanivorans   3 2
No Yes Flavobacterium indicum GPTSA100-9   2 2
No Yes Flavobacterium johnsoniae UW101   2 2
No Yes Parachlamydia acanthamoebae UV-7   1 1
No Yes Planctomyces limnophilus DSM 3776   1 1
No Yes Pirellula staleyi DSM 6068   1 1
No Yes Coraliomargarita akajimensis DSM 45221   2 1
No Yes Opitutus terrae PB90-1   1 1
No Yes Turneriella parva DSM 21527   3 3
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   6 5
No Yes Spirochaeta smaragdinae DSM 11293   1 1
No Yes Sphaerochaeta coccoides DSM 17374   1 1
No Yes Spirochaeta thermophila DSM 6192   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Candidatus Koribacter versatilis Ellin345   2 1
No Yes Leptospirillum ferrooxidans C2-3   3 2
No Yes Streptobacillus moniliformis DSM 12112   1 1
No Yes Candidatus Methylomirabilis oxyfera   1 1
No Yes Bacteriovorax marinus SJ   2 2
No Yes Desulfomonile tiedjei DSM 6799   3 3
No Yes Desulfatibacillum alkenivorans AK-01   1 1
No Yes Desulfovibrio salexigens DSM 2638   1 1
No Yes Geobacter daltonii FRC-32   2 1
No Yes Geobacter uraniireducens Rf4   1 1
No Yes Geobacter bemidjiensis Bem   1 1
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Haliangium ochraceum DSM 14365   9 8
No Yes Sorangium cellulosum 'So ce 56'   15 13
No Yes Anaeromyxobacter dehalogenans 2CP-1   1 1
No Yes Stigmatella aurantiaca DW4/3-1   7 7
No Yes Corallococcus coralloides DSM 2259   14 14
No Yes Myxococcus xanthus DK 1622   11 8
No Yes Myxococcus fulvus HW-1   5 3
No Yes Dechloromonas aromatica RCB   1 1
No Yes Azoarcus sp. KH32C   2 2
No Yes Cupriavidus taiwanensis LMG 19424   1 1
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Cupriavidus necator N-1   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   3 3
No Yes Burkholderia mallei SAVP1   2 2
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Variovorax paradoxus S110   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Sphingopyxis alaskensis RB2256   2 1
No Yes Maricaulis maris MCS10   1 1
No Yes Micavibrio aeruginosavorus ARL-13   1 1
No Yes Methylobacterium chloromethanicum CM4   2 2
No Yes Methylobacterium extorquens AM1   2 2
No Yes Methylobacterium sp. 4-46   3 2
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Teredinibacter turnerae T7901   2 2
No Yes Cellvibrio japonicus Ueda107   1 1
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella violacea DSS12   2 2
No Yes Pseudoalteromonas atlantica T6c   1 1
No Yes Pseudoalteromonas haloplanktis TAC125   1 1
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Marinobacter adhaerens HP15   1 1
No Yes Alteromonas macleodii str. 'Deep ecotype'   1 1
No Yes Hahella chejuensis KCTC 2396   2 2
No Yes Methylomicrobium alcaliphilum   1 1
No Yes Xanthomonas albilineans GPE PC73   2 2
No Yes Alkalilimnicola ehrlichii MLHE-1   1 1
No Yes Thioalkalivibrio sp. K90mix   1 1
No Yes Nitrosococcus watsonii C-113   1 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes Photorhabdus asymbiotica   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   5 5
No Yes Edwardsiella tarda EIB202   1 1
No Yes Candidatus Caldiarchaeum subterraneum   1 1
No Yes Sulfolobus tokodaii str. 7   1 1
No Yes Methanocella conradii HZ254   1 1
No Yes Methanosaeta harundinacea 6Ac   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Thermococcus gammatolerans EJ3   1 1
No Yes Natrinema sp. J7-2   1 1
No Yes Halorhabdus utahensis DSM 12940   5 4
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 14 14
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 3 3
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 5 5
No Yes Ascaris suum Victoria/Ghent Pig roundworm 3 3
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 4 3
No Yes Cryptococcus neoformans var. grubii H99   10 8
No Yes Cryptococcus neoformans B-3501A   7 6
No Yes Cryptococcus neoformans JEC21   6 5
No Yes Paracoccidioides brasiliensis Pb01   5 5
No Yes Paracoccidioides brasiliensis Pb03   7 7
No Yes Coccidioides posadasii str. Silveira   8 7
No Yes Coccidioides immitis RMSCC 3703   6 6
No Yes Coccidioides immitis RMSCC 2394   7 6
No Yes Coccidioides immitis H538.4   8 7
No Yes Ajellomyces dermatitidis ER-3   7 7
No Yes Histoplasma capsulatum H143   5 5
No Yes Histoplasma capsulatum H88   5 5
No Yes Histoplasma capsulatum G186AR   6 6
No Yes Aspergillus fumigatus A1163   7 6
No Yes Candida albicans WO-1   1 1
No Yes Saccharomyces cerevisiae UC5   2 2
No Yes Saccharomyces cerevisiae PW5   3 3
No Yes Saccharomyces cerevisiae FL100   2 1
No Yes Saccharomyces cerevisiae CLIB324   1 1
No Yes Saccharomyces cerevisiae CBS7960   2 2
No Yes Saccharomyces cerevisiae YJM269   2 2
No Yes Saccharomyces cerevisiae T7   2 2
No Yes Saccharomyces cerevisiae FostersB   2 1
No Yes Saccharomyces cerevisiae FostersO   2 2
No Yes Saccharomyces cerevisiae VL3   1 1
No Yes Saccharomyces cerevisiae Vin13   1 1
No Yes Saccharomyces cerevisiae LalvinQA23   1 1
No Yes Saccharomyces cerevisiae AWRI796   2 2
No Yes Saccharomyces cerevisiae Sigma1278b   2 2
No Yes Saccharomyces cerevisiae W303   3 2
No Yes Saccharomyces cerevisiae JAY291   2 2
No Yes Saccharomyces cerevisiae AWRI1631   1 1
No Yes Saccharomyces cerevisiae YPS163   1 1
No Yes Saccharomyces cerevisiae CLIB215   1 1
No Yes Saccharomyces cerevisiae YJM789   2 2
No Yes Saccharomyces cerevisiae YJM789   2 2
No Yes Saccharomyces cerevisiae RM11-1a   2 2
No Yes Saccharomyces cerevisiae RM11-1a   2 2
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 2 2
No Yes Schizosaccharomyces pombe 972h-   2 2
No Yes Batrachochytrium dendrobatidis JEL423   4 4
No Yes Batrachochytrium dendrobatidis JAM81   4 4
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 33 33
No Yes Hordeum vulgare 22 Domesticated barley 39 38
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 44 44
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Neospora caninum Nc-Liverpool 6.2   5 4
No Yes Plasmodium falciparum HB3   8 7
No Yes Plasmodium falciparum Dd2   4 4
No Yes Chroococcidiopsis thermalis PCC 7203   2 2
No Yes Dactylococcopsis salina PCC 8305   1 1
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Frankia sp. EuI1c   1 1
No Yes Streptomyces albus J1074   3 2
No Yes Streptomyces rapamycinicus NRRL 5491   3 3
No Yes Streptomyces davawensis JCM 4913   6 4
No Yes Streptomyces fulvissimus DSM 40593   3 2
No Yes Streptomyces venezuelae ATCC 10712   5 3
No Yes Streptomyces collinus Tu 365   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 1
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Actinoplanes friuliensis DSM 7358   5 4
No Yes Mycobacterium sp. MOTT36Y   1 1
No Yes Mycobacterium sp. KMS   1 1
No Yes Mycobacterium sp. MCS   1 1
No Yes Mycobacterium yongonense 05-1390   1 1
No Yes Mycobacterium intracellulare MOTT-64   2 1
No Yes Mycobacterium indicus pranii MTCC 9506   2 1
No Yes Mycobacterium intracellulare MOTT-02   2 1
No Yes Bifidobacterium longum subsp. longum KACC 91563   1 1
No Yes Bifidobacterium longum subsp. longum F8   1 1
No Yes Deinococcus peraridilitoris DSM 19664   2 2
No Yes Thermus oshimai JL-2   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus 2038   1 1
No Yes Paenibacillus mucilaginosus KNP414   1 1
No Yes Paenibacillus larvae subsp. larvae DSM 25430   1 1
No Yes Bacillus subtilis BSn5   1 1
No Yes Bacillus subtilis subsp. subtilis str. RO-NN-1   1 1
No Yes Bacillus subtilis subsp. spizizenii str. W23   1 1
No Yes Salinibacter ruber DSM 13855   3 3
No Yes Rhodothermus marinus SG0.5JP17-172   1 1
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Emticicia oligotrophica DSM 17448   1 1
No Yes Bacteroides xylanisolvens XB1A   1 1
No Yes Bacteroides fragilis 638R   1 1
No Yes Bacteroides fragilis NCTC 9343   1 1
No Yes Nonlabens dokdonensis DSW-6   3 3
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   4 4
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Geobacter sulfurreducens PCA   1 1
No Yes Sorangium cellulosum So0157-2   13 10
No Yes Anaeromyxobacter sp. K   1 1
No Yes Myxococcus stipitatus DSM 14675   11 10
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. KJ006   1 1
No Yes Burkholderia pseudomallei MSHR305   3 3
No Yes Burkholderia pseudomallei NCTC 13179   3 3
No Yes Burkholderia pseudomallei BPC006   3 3
No Yes Burkholderia pseudomallei 1026b   4 4
No Yes Burkholderia pseudomallei MSHR346   3 3
No Yes Burkholderia pseudomallei 668   2 2
No Yes Burkholderia pseudomallei 1710b   4 4
No Yes Burkholderia pseudomallei K96243   4 4
No Yes Burkholderia mallei NCTC 10229   2 2
No Yes Burkholderia mallei NCTC 10247   2 2
No Yes Burkholderia mallei ATCC 23344   2 2
No Yes Nitrosomonas sp. AL212   1 1
No Yes Micavibrio aeruginosavorus EPB   2 1
No Yes Methylobacterium extorquens DM4   1 1
No Yes Methylobacterium extorquens PA1   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Vibrio vulnificus CMCP6   1 1
No Yes Vibrio vulnificus YJ016   1 1
No Yes Glaciecola psychrophila 170   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   1 1
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   1 1
No Yes Alteromonas macleodii str. 'English Channel 615'   1 1
No Yes Alteromonas macleodii AltDE1   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   1 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   1 1
No Yes Edwardsiella tarda C07-087   1 1
No Yes Edwardsiella tarda FL6-60   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Candidatus Nitrososphaera gargensis Ga9.2   1 1
No Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1   1 1
No Yes Sulfolobus acidocaldarius Ron12/I   1 1
No Yes Sulfolobus acidocaldarius N8   1 1
No Yes Thermococcus sp. AM4   1 1
No Yes Natronococcus occultus SP4   1 1
No Yes Halorhabdus tiamatea SARL4B   5 4
No Yes Homo sapiens 75_37 (old version GRC) Human 25 23
No Yes Homo sapiens (NCBI version) Human 12 11
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 9 9
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 2 2
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 3 3
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Moniliophthora perniciosa FA553 (Genome survey)   10 10
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   34 34
No Yes Malus x domestica (Duplicate) Apple 53 53
No Yes Ricinus communis (Early assembly) Castor bean 18 17
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   61 59
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 30 30
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 32 32
No Yes Phoenix dactylifera (Early draft) Date palm 11 11
No Yes Homo sapiens 69_37 Human 13 12
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 8 7
No Yes Gorilla gorilla 69_3.1 Western gorilla 12 11
No Yes Pongo abelii 69_2 Sumatran orangutan 11 10
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 9 9
No Yes Macaca mulatta 69_1 Rhesus monkey 10 9
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 7 7
No Yes Otolemur garnettii 69_3 Small-eared galago 6 6
No Yes Microcebus murinus 69_1 Gray mouse lemur 7 6
No Yes Rattus norvegicus 69_3.4 Norway rat 12 11
No Yes Mus musculus 69_38 House mouse 10 10
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 8 8
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 13 12
No Yes Cavia porcellus 69_3 Domestic guinea pig 7 6
No Yes Oryctolagus cuniculus 69_2 Rabbit 9 8
No Yes Ochotona princeps 69 American pika 5 5
No Yes Tupaia belangeri 69 Northern tree shrew 9 9
No Yes Sus scrofa 69_10.2 Pig 9 8
No Yes Bos taurus 69_3.1 Cattle 13 11
No Yes Vicugna pacos 69_1 Alpaca 6 5
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 9 8
No Yes Mustela putorius furo 69_1.0 Domestic ferret 8 8
No Yes Ailuropoda melanoleuca 69_1 Giant panda 10 9
No Yes Canis familiaris 69_3.1 Dog 11 9
No Yes Felis catus 69 Domestic cat 4 4
No Yes Equus caballus 69_2 Horse 8 7
No Yes Myotis lucifugus 69_2.0 Little brown bat 9 8
No Yes Pteropus vampyrus 69_1 Large flying fox 7 7
No Yes Sorex araneus 69_1 European shrew 7 6
No Yes Erinaceus europaeus 69 Western European hedgehog 6 6
No Yes Procavia capensis 69_1 Cape rock hyrax 11 10
No Yes Loxodonta africana 69_3 African savanna elephant 13 12
No Yes Echinops telfairi 69 Small Madagascar hedgehog 6 6
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 3 3
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 5 4
No Yes Macropus eugenii 69_1.0 Tammar wallaby 4 4
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 12 11
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 9 8
No Yes Ornithorhynchus anatinus 69_5 Platypus 9 9
No Yes Petromyzon marinus 69_7.0 Sea lamprey 4 3
No Yes Meleagris gallopavo 69_2 Turkey 11 10
No Yes Gallus gallus 69_2 Chicken 10 9
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 11 11
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 10 9
No Yes Anolis carolinensis 69_2.0 Green anole 8 8
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 13 13
No Yes Latimeria chalumnae 69_1 Coelacanth 11 10
No Yes Gadus morhua 69_1 Atlantic cod 7 6
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 14 13
No Yes Takifugu rubripes 69_4 Torafugu 13 11
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 12 11
No Yes Oryzias latipes 69_1 Japanese medaka 7 6
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 15 13
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 13 12
No Yes Danio rerio 69_9 Zebrafish 8 8
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 69 Vase tunicate 8 8
No Yes Drosophila melanogaster 69_5 Fruit fly 3 3
No Yes Caenorhabditis elegans 69_215 Roundworm 4 3
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 3 2
No Yes Arabidopsis thaliana 10 Thale cress 94 92
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   21 21
No Yes 4_Deep_abyss (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   21 19
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   3 3
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Combined (meta-genome)   2 2
No Yes Crater Hills (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   7 7
No Yes Dump bottom (Dump bottom) (meta-genome)   5 5
No Yes Dump top (Dump top) (meta-genome)   5 5
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   15 11
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   10 10
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   6 6
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   3 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   4 4
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   10 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   13 13
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   12 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   2 2
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   22 22
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   15 15
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   10 9
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   72 71
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   22 22
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   8 8
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   17 16
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   17 17
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   8 8
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   22 22
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   14 14
No Yes Mouse Gut Community lean2 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   23467 21724
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   34 34
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   99 94
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   4 4
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   7 6
No Yes Sludge/US, Jazz Assembly (meta-genome)   2 2
No Yes Sludge/US, Phrap Assembly (meta-genome)   3 3
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   36 36
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   29 29
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   27 27
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   27 27
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   32 32
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   37 37
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   43 43
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   5 4
No Yes STRING v9.0.5 (STRING)   1442 1360
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   7 7
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   39 39
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   21 21
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   34965 33218
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   8 7
No Yes Global Ocean Sampling Expedition (GOS)   797 743
No Yes NCBI plasmid sequences (Plasmids)   12 12
No Yes NCBI viral sequences (Viral)   14 11
No Yes PDB chains (SCOP 1.75) (PDB)   6 6
No Yes Protein Data Bank (all PDB sequenc)   85 80
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   65 65
No Yes TargetDB (Targets)   62 57
No Yes UniProt viral sequences (Viral)   14 9

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