SUPERFAMILY 1.75 HMM library and genome assignments server

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WD40 repeat-like superfamily domain assignments
in
Mycoplasma penetrans HF-2


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Select to display   Genome       Domains   Proteins
No Yes ALL   932202 932202
No Yes Homo sapiens 76_38 Human 1285 1206
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 303 268
No Yes Gorilla gorilla 76_3.1 Western gorilla 412 374
No Yes Pongo abelii 76_2 Sumatran orangutan 319 292
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 327 296
No Yes Papio anubis 76 Olive baboon 342 306
No Yes Macaca mulatta 76_1 Rhesus monkey 551 508
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 704 641
No Yes Otolemur garnettii 76_3 Small-eared galago 321 286
No Yes Microcebus murinus 76_1 Gray mouse lemur 255 236
No Yes Rattus norvegicus 76_5.0 Norway rat 386 345
No Yes Mus musculus 76_38 House mouse 747 692
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 289 250
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 310 276
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 357 328
No Yes Cavia porcellus 76_3 Domestic guinea pig 314 283
No Yes Oryctolagus cuniculus 76_2 Rabbit 335 296
No Yes Ochotona princeps 76 American pika 255 237
No Yes Tupaia belangeri 76 Northern tree shrew 246 228
No Yes Sus scrofa 76_10.2 Pig 376 345
No Yes Bos taurus 76_3.1 Cattle 324 290
No Yes Ovis aries 76_3.1 Sheep 359 325
No Yes Vicugna pacos 76_1 Alpaca 203 184
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 302 274
No Yes Mustela putorius furo 76_1.0 Domestic ferret 315 286
No Yes Ailuropoda melanoleuca 76_1 Giant panda 360 321
No Yes Canis familiaris 76_3.1 Dog 451 389
No Yes Felis catus 76_6.2 Domestic cat 323 294
No Yes Equus caballus 76_2 Horse 380 335
No Yes Myotis lucifugus 76_2.0 Little brown bat 337 297
No Yes Pteropus vampyrus 76_1 Large flying fox 304 273
No Yes Sorex araneus 76_1 European shrew 222 201
No Yes Erinaceus europaeus 76 Western European hedgehog 242 221
No Yes Procavia capensis 76_1 Cape rock hyrax 288 263
No Yes Loxodonta africana 76_3 African savanna elephant 403 360
No Yes Echinops telfairi 76 Small Madagascar hedgehog 249 234
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 383 343
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 206 189
No Yes Macropus eugenii 76_1.0 Tammar wallaby 276 249
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 401 355
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 334 303
No Yes Ornithorhynchus anatinus 76_5 Platypus 307 289
No Yes Saccoglossus kowalevskii v3.0   553 471
No Yes Petromyzon marinus 76_7.0 Sea lamprey 189 173
No Yes Meleagris gallopavo 76_2 Turkey 320 288
No Yes Gallus gallus 76_4 Chicken 281 252
No Yes Anas platyrhynchos 76_1.0 Mallard 290 266
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 313 283
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 292 259
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 327 290
No Yes Anolis carolinensis 76_2.0 Green anole 309 275
No Yes Xenopus laevis African clawed frog 562 528
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 392 351
No Yes Latimeria chalumnae 76_1 Coelacanth 390 343
No Yes Lepisosteus oculatus 76 Spotted gar 416 363
No Yes Gadus morhua 76_1 Atlantic cod 334 305
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 381 345
No Yes Takifugu rubripes 76_4 Torafugu 758 684
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 435 395
No Yes Oryzias latipes 76_1 Japanese medaka 361 323
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 336 299
No Yes Poecilia formosa 76 Amazon molly 337 296
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 435 391
No Yes Astyanax mexicanus 76 Mexican tetra 337 303
No Yes Danio rerio 76_9 Zebrafish 534 489
No Yes Oikopleura dioica   220 203
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 408 366
No Yes Ciona intestinalis 76 Vase tunicate 274 245
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 394 353
No Yes Adineta vaga   623 555
No Yes Octopus bimaculoides 280   381 343
No Yes Crassostrea gigas 22 Pacific oyster 289 256
No Yes Lottia gigantea Owl limpet 281 252
No Yes Helobdella robusta   237 214
No Yes Capitella sp. I   322 286
No Yes Danaus plexippus OGS1.0 Monarch butterfly 225 205
No Yes Heliconius melpomene Postman butterfly 207 191
No Yes Bombyx mori Domestic silkworm 219 216
No Yes Nasonia vitripennis Jewel wasp 193 178
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 373 350
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 227 208
No Yes Linepithema humile v1.1 Argentine ant 229 207
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 226 208
No Yes Solenopsis invicta v.2.2.3 Red fire ant 207 197
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 220 202
No Yes Atta cephalotes v1.1   238 218
No Yes Camponotus floridanus v3.3 Florida carpenter ant 220 198
No Yes Lucilia cuprina Australian sheep blowfly 212 191
No Yes Drosophila grimshawi 1.3   227 208
No Yes Drosophila willistoni 1.3   218 198
No Yes Drosophila pseudoobscura 2.13   222 202
No Yes Drosophila persimilis 1.3   235 214
No Yes Drosophila suzukii   221 193
No Yes Drosophila yakuba 1.3   210 186
No Yes Drosophila simulans 1.3   181 166
No Yes Drosophila sechellia 1.3   203 187
No Yes Drosophila melanogaster 76_5 Fruit fly 415 364
No Yes Drosophila erecta 1.3   207 184
No Yes Drosophila ananassae 1.3   213 192
No Yes Drosophila virilis 1.2   207 187
No Yes Drosophila mojavensis 1.3   203 182
No Yes Megaselia scalaris 22   98 95
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 244 222
No Yes Culex pipiens quinquefasciatus Southern house mosquito 275 257
No Yes Anopheles darlingi 22 American malaria mosquito 178 166
No Yes Anopheles gambiae 49_3j African malaria mosquito 212 195
No Yes Tribolium castaneum 3.0 Red flour beetle 230 205
No Yes Pediculus humanus corporis (Early assembly) Human body louse 236 214
No Yes Acyrthosiphon pisum Pea aphid 215 194
No Yes Rhodnius prolixus 22   221 207
No Yes Daphnia pulex Common water flea 290 275
No Yes Strigamia maritima 22   262 229
No Yes Sarcoptes scabiei   170 151
No Yes Tetranychus urticae Two-spotted spider mite 200 186
No Yes Ixodes scapularis (Preliminary) Black-legged tick 189 178
No Yes Pristionchus pacificus   162 157
No Yes Meloidogyne incognita Southern root-knot nematode 179 170
No Yes Meloidogyne hapla   118 112
No Yes Onchocerca volvulus 22   176 159
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 238 210
No Yes Caenorhabditis japonica   172 160
No Yes Caenorhabditis brenneri   252 229
No Yes Caenorhabditis remanei   213 194
No Yes Caenorhabditis elegans 76_235 Roundworm 284 260
No Yes Caenorhabditis briggsae 2   180 168
No Yes Trichinella spiralis 22   204 191
No Yes Hymenolepis microstoma   183 164
No Yes Echinococcus multilocularis   194 176
No Yes Echinococcus granulosus   195 172
No Yes Taenia solium Pork tapeworm 192 177
No Yes Schistosoma mansoni   253 233
No Yes Mnemiopsis leidyi Sea walnut 234 213
No Yes Thelohanellus kitauei   96 90
No Yes Acropora digitifera v1.0   322 309
No Yes Nematostella vectensis 1.0 Starlet sea anemone 341 312
No Yes Hydra vulgaris   282 265
No Yes Amphimedon queenslandica   372 342
No Yes Trichoplax adhaerens   279 240
No Yes Proterospongia sp. ATCC 50818   259 214
No Yes Monosiga brevicollis   194 176
No Yes Sphaeroforma arctica JP610   171 167
No Yes Capsaspora owczarzaki ATCC 30864   188 174
No Yes Conidiobolus coronatus NRRL28638 v1.0   146 138
No Yes Mortierella verticillata NRRL 6337   196 181
No Yes Phycomyces blakesleeanus   199 186
No Yes Rhizopus oryzae RA 99-880   209 198
No Yes Mucor circinelloides   206 193
No Yes Rhizomucor miehei CAU432   181 173
No Yes Malassezia globosa CBS 7966   227 209
No Yes Sporisorium reilianum 22   123 115
No Yes Ustilago maydis   118 113
No Yes Mixia osmundae IAM 14324 v1.0   130 119
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   123 115
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   132 124
No Yes Melampsora laricis-populina   130 121
No Yes Rhodotorula graminis WP1 v1.0   113 108
No Yes Sporobolomyces roseus IAM 13481   113 103
No Yes Microbotryum violaceum 22   124 118
No Yes Wallemia sebi v1.0   114 107
No Yes Sphaerobolus stellatus v1.0   430 383
No Yes Piloderma croceum F 1598 v1.0   364 298
No Yes Serpula lacrymans var. lacrymans S7.9   154 144
No Yes Coniophora puteana   273 218
No Yes Hydnomerulius pinastri v2.0   351 321
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   197 186
No Yes Pisolithus microcarpus 441 v1.0   325 300
No Yes Pisolithus tinctorius Marx 270 v1.0   312 293
No Yes Scleroderma citrinum Foug A v1.0   239 219
No Yes Coprinopsis cinerea okayama7 130 v3   156 151
No Yes Pleurotus ostreatus Oyster mushroom 171 162
No Yes Amanita thiersii Skay4041 v1.0   141 132
No Yes Amanita muscaria Koide v1.0 Fly agaric 389 330
No Yes Galerina marginata v1.0   208 194
No Yes Hebeloma cylindrosporum h7 v2.0   170 160
No Yes Laccaria bicolor S238N-H82   285 268
No Yes Agaricus bisporus var. bisporus   155 147
No Yes Schizophyllum commune   155 148
No Yes Stereum hirsutum FP-91666 SS1 v1.0   181 166
No Yes Heterobasidion annosum   155 143
No Yes Gloeophyllum trabeumv1.0   150 142
No Yes Punctularia strigosozonata v1.0   197 189
No Yes Sebacina vermifera MAFF 305830 v1.0   411 322
No Yes Fomitiporia mediterranea v1.0   238 195
No Yes Tulasnella calospora AL13/4D v1.0   247 224
No Yes Postia placenta   210 202
No Yes Wolfiporia cocos MD-104 SS10 v1.0   169 157
No Yes Fomitopsis pinicolav1.0   162 155
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   157 151
No Yes Phanerochaete chrysosporium RP-78 2.1   135 131
No Yes Dichomitus squalens   215 199
No Yes Trametes versicolor v1.0   160 151
No Yes Tremella mesenterica Witches' butter 118 109
No Yes Daldinia eschscholzii EC12 v1.0   135 127
No Yes Apiospora montagnei NRRL 25634 v1.0   142 133
No Yes Magnaporthe poae ATCC 64411 22   122 112
No Yes Magnaporthe grisea 70-15   128 119
No Yes Podospora anserina   157 142
No Yes Sporotrichum thermophile ATCC 42464   121 116
No Yes Thielavia terrestris NRRL 8126   139 127
No Yes Chaetomium globosum CBS 148.51   141 130
No Yes Neurospora tetrasperma   130 119
No Yes Neurospora discreta FGSC 8579   122 116
No Yes Neurospora crassa OR74A   130 120
No Yes Cryphonectria parasitica Chestnut blight fungus 130 123
No Yes Verticillium albo-atrum VaMs.102   121 115
No Yes Verticillium dahliae VdLs.17   125 119
No Yes Acremonium alcalophilumv 1.0   125 117
No Yes Glomerella graminicola 22   129 123
No Yes Fusarium graminearum   145 137
No Yes Nectria haematococca mpVI   153 141
No Yes Fusarium oxysporum f. sp. lycopersici 4286   154 143
No Yes Fusarium verticillioides 7600   128 118
No Yes Trichoderma asperellum CBS 433.97 v1.0   156 144
No Yes Trichoderma atroviride   160 147
No Yes Trichoderma citrinoviride v1.0   141 126
No Yes Trichoderma reesei 1.2   144 131
No Yes Trichoderma virens Gv29-8   178 159
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   144 128
No Yes Trichoderma harzianum CBS 226.95 v1.0   181 160
No Yes Amorphotheca resinae v1.0 Creosote fungus 136 126
No Yes Botrytis cinerea B05.10   130 121
No Yes Sclerotinia sclerotiorum   152 138
No Yes Blumeria graminis 22   127 116
No Yes Didymella exigua CBS 183.55 v1.0   139 131
No Yes Leptosphaeria maculans 22   132 123
No Yes Setosphaeria turcica v1.0   150 137
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   146 134
No Yes Cochliobolus victoriae FI3 v1.0   155 142
No Yes Cochliobolus carbonum 26-R-13 v1.0   149 136
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 143 131
No Yes Alternaria brassicicola   128 120
No Yes Cochliobolus lunatus m118 v2.0   153 139
No Yes Pyrenophora teres f. teres 22   136 126
No Yes Pyrenophora tritici-repentis   143 128
No Yes Stagonospora nodorum   132 126
No Yes Mycosphaerella graminicola IPO323   137 126
No Yes Zasmidium cellare ATCC 36951 v1.0   137 128
No Yes Dothistroma septosporum   133 129
No Yes Septoria musiva v1.0   129 120
No Yes Mycosphaerella fijiensis CIRAD86   121 114
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   141 132
No Yes Paracoccidioides brasiliensis Pb18   131 123
No Yes Coccidioides posadasii RMSCC 3488   134 127
No Yes Coccidioides immitis RS   131 121
No Yes Ajellomyces dermatitidis SLH14081   137 129
No Yes Histoplasma capsulatum class NAmI strain WU24   136 126
No Yes Microsporum canis CBS 113480   131 125
No Yes Trichophyton equinum CBS 127.97   135 125
No Yes Trichophyton verrucosum HKI 0517   132 124
No Yes Arthroderma benhamiae CBS 112371   132 125
No Yes Trichophyton tonsurans CBS 112818   139 127
No Yes Trichophyton rubrum CBS 118892   137 128
No Yes Uncinocarpus reesii 1704   129 120
No Yes Aspergillus zonatus v1.0   142 131
No Yes Penicillium chrysogenum Wisconsin 54-1255   141 130
No Yes Penicillium chrysogenum v1.0   147 137
No Yes Aspergillus acidus v1.0   148 138
No Yes Aspergillus fumigatus Af293   139 127
No Yes Aspergillus brasiliensis v1.0   145 134
No Yes Aspergillus nidulans FGSC A4   148 135
No Yes Aspergillus sydowii v1.0   138 129
No Yes Aspergillus versicolor v1.0   146 131
No Yes Aspergillus glaucus   150 139
No Yes Aspergillus carbonarius ITEM 5010   136 127
No Yes Neosartorya fischeri NRRL 181   132 123
No Yes Aspergillus terreus NIH2624   142 127
No Yes Aspergillus tubingensis v1.0   147 134
No Yes Aspergillus wentii v1.0   157 136
No Yes Aspergillus oryzae RIB40   140 131
No Yes Aspergillus niger 22   147 134
No Yes Aspergillus niger ATCC 1015   109 101
No Yes Aspergillus flavus NRRL3357   134 127
No Yes Aspergillus clavatus NRRL 1   137 127
No Yes Penicillium marneffei ATCC 18224   148 140
No Yes Tuber melanosporum Mel28 22   137 126
No Yes Tuber melanosporum Vittad Perigord truffle 144 133
No Yes Hansenula polymorpha v2.0   118 113
No Yes Dekkera bruxellensis CBS 2499 v2.0   124 116
No Yes Pichia membranifaciensv1.0   114 105
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   126 114
No Yes Candida dubliniensis CD36   116 107
No Yes Candida tropicalis MYA-3404   120 111
No Yes Candida parapsilosis   131 117
No Yes Candida albicans SC5314   124 115
No Yes Lodderomyces elongisporus NRRL YB-4239   115 104
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   129 120
No Yes Pichia stipitis CBS 6054   118 109
No Yes Candida guilliermondii ATCC 6260   123 111
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   128 119
No Yes Debaromyces hansenii   125 119
No Yes Wickerhamomyces anomalus   128 119
No Yes Pichia pastoris GS115   128 118
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   92 86
No Yes Yarrowia lipolytica CLIB122   134 123
No Yes Candida lusitaniae ATCC 42720   116 106
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   107 103
No Yes Vanderwaltozyma polyspora DSM 70294   118 109
No Yes Candida glabrata CBS138   121 111
No Yes Kluyveromyces thermotolerans CBS 6340   122 112
No Yes Lachancea kluyveri   128 116
No Yes Kluyveromyces waltii   121 112
No Yes Ashbya gossypii ATCC 10895   120 112
No Yes Zygosaccharomyces rouxii   124 112
No Yes Saccharomyces mikatae MIT   127 119
No Yes Saccharomyces paradoxus MIT   125 116
No Yes Saccharomyces cerevisiae 76 Baker's yeast 124 111
No Yes Saccharomyces bayanus MIT   124 115
No Yes Kluyveromyces lactis   124 111
No Yes Schizosaccharomyces cryophilus OY26 22   141 131
No Yes Schizosaccharomyces octosporus yFS286   138 130
No Yes Schizosaccharomyces japonicus yFS275   143 133
No Yes Schizosaccharomyces pombe Fission yeast 146 134
No Yes Catenaria anguillulae PL171 v1.0   195 182
No Yes Allomyces macrogynus ATCC 38327   360 331
No Yes Spizellomyces punctatus DAOM BR117   233 205
No Yes Dictyostelium discoideum   212 191
No Yes Dictyostelium purpureum   209 188
No Yes Entamoeba dispar 1.2   171 163
No Yes Entamoeba invadens 1.2   157 151
No Yes Entamoeba histolytica 1   149 141
No Yes Selaginella moellendorffii   410 383
No Yes Pinus taeda Loblolly pine 304 291
No Yes Picea abies Norway spruce 147 144
No Yes Eucalyptus grandis v201 Rose gum 467 435
No Yes Theobroma cacao B97-61/B2 v1 Cacao 267 246
No Yes Gossypium raimondii v221   1024 953
No Yes Citrus clementina v165   415 391
No Yes Citrus sinensis v154 Sweet orange 624 565
No Yes Thellungiella halophila v173   310 289
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 396 365
No Yes Capsella rubella v183   295 270
No Yes Arabidopsis lyrata Lyrate rockcress 284 263
No Yes Arabidopsis thaliana 10 Thale cress 399 355
No Yes Carica papaya Papaya 228 222
No Yes Medicago truncatula Barrel medic 445 423
No Yes Phaseolus vulgaris v186 French bean 334 316
No Yes Glycine max v109 Soybean 624 587
No Yes Cucumis sativus v122 Cucumber 357 333
No Yes Fragaria vesca Wild strawberry 270 251
No Yes Malus domestica v196 Apple 605 587
No Yes Prunus persica v139 Peach 272 257
No Yes Linum usitatissimum v200 Flax 476 450
No Yes Manihot esculenta v147 Cassava 379 352
No Yes Populus trichocarpa v156 Black cottonwood 431 403
No Yes Vitis vinifera Wine grape 286 266
No Yes Mimulus guttatus v140 Spotted monkey flower 298 282
No Yes Solanum lycopersicum v.2.3 Tomato 293 275
No Yes Solanum tuberosum Potato 389 362
No Yes Actinidia chinensis Hongyang   367 351
No Yes Aquilegia coerulea v195   574 531
No Yes Triticum urartu 22   225 213
No Yes Triticum aestivum 22 Bread wheat 811 784
No Yes Aegilops tauschii 22   248 236
No Yes Brachypodium distachyon Stiff brome 304 287
No Yes Oryza barthii 22 African wild rice 369 339
No Yes Oryza meridionalis 22   404 366
No Yes Oryza glumaepatula 22   391 369
No Yes Oryza glaberrima African rice 200 193
No Yes Oryza punctata 22   404 375
No Yes Oryza nivara 22   414 385
No Yes Oryza brachyantha 22 Malo sina 244 228
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 360 344
No Yes Oryza sativa v193 Rice 352 336
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 341 326
No Yes Panicum virgatum v202 Switchgrass 508 493
No Yes Setaria italica v164 Foxtail millet 315 299
No Yes Zea mays subsp. mays Maize 480 447
No Yes Zea mays v181 Maize 540 514
No Yes Sorghum bicolor Sorghum 247 225
No Yes Musa balbisiana Balbis banana 320 304
No Yes Musa acuminata 22 Wild Malaysian banana 343 325
No Yes Amborella trichopoda 22   234 218
No Yes Physcomitrella patens   298 284
No Yes Coccomyxa subellipsoidea sp. C-169 v2   141 132
No Yes Asterochloris sp. Cgr/DA1pho v1.0   148 130
No Yes Chlorella variabilis sp. NC64A   143 135
No Yes Chlorella vulgaris   132 128
No Yes Volvox carteri f. nagariensis   210 188
No Yes Volvox carteri v199   198 174
No Yes Chlamydomonas reinhardtii 4.0   196 175
No Yes Ostreococcus sp. RCC809   124 117
No Yes Ostreococcus lucimarinus CCE9901   134 125
No Yes Ostreococcus tauri   122 114
No Yes Bathycoccus prasinos   145 134
No Yes Micromonas sp. RCC299   176 156
No Yes Micromonas pusilla CCMP1545 v3.0   185 166
No Yes Cyanidioschyzon merolae strain 10D 22   93 89
No Yes Cyanidioschyzon merolae   92 87
No Yes Porphyridium purpureum 02_2012   137 130
No Yes Thecamonas trahens ATCC 50062   268 233
No Yes Bigelowiella natans CCMP2755 22   261 240
No Yes Giardia lamblia 2.3   104 97
No Yes Cyanophora paradoxa   326 310
No Yes Leishmania mexicana 2.4   157 146
No Yes Leishmania major strain Friedlin   152 144
No Yes Leishmania infantum JPCM5 2.4   163 150
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   161 148
No Yes Trypanosoma vivax   173 163
No Yes Trypanosoma cruzi strain CL Brener   154 143
No Yes Trypanosoma congolense 2.4   202 186
No Yes Trypanosoma brucei gambiense v4.1   173 162
No Yes Trypanosoma brucei TREU927 v4.1   177 165
No Yes Ectocarpus siliculosus   240 211
No Yes Aureococcus anophagefferens   192 172
No Yes Albugo laibachii 22   284 241
No Yes Pythium iwayamai DAOM BR242034 22   236 206
No Yes Pythium arrhenomanes ATCC 12531 22   221 197
No Yes Pythium ultimum v1.7-2   231 205
No Yes Pythium aphanidermatum DAOM BR444 22   225 191
No Yes Pythium irregulare DAOM BR486 22   233 196
No Yes Pythium vexans DAOM BR484 22   213 190
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 198 185
No Yes Phytophthora sojae 1.1   214 192
No Yes Phytophthora infestans T30-4   242 209
No Yes Phytophthora capsici   203 185
No Yes Hyaloperonospora arabidopsidis 22   159 152
No Yes Phaeodactylum tricornutumCCAP 1055/1   107 101
No Yes Fragilariopsis cylindrus   188 174
No Yes Thalassiosira pseudonana CCMP1335   128 115
No Yes Perkinsus marinus ATCC 50983   255 235
No Yes Paramecium tetraurelia   1017 864
No Yes Tetrahymena thermophila SB210 1   617 485
No Yes Ichthyophthirius multifiliis strain G5   258 216
No Yes Cryptosporidium hominis   79 75
No Yes Cryptosporidium muris   97 89
No Yes Cryptosporidium parvum Iowa II   90 84
No Yes Neospora caninum   121 110
No Yes Toxoplasma gondii VEG   119 113
No Yes Toxoplasma gondii ME49   129 119
No Yes Toxoplasma gondii GT1   119 112
No Yes Babesia bovis T2Bo   168 158
No Yes Theileria parva   75 71
No Yes Theileria annulata   80 73
No Yes Plasmodium falciparum 3D7   104 89
No Yes Plasmodium vivax SaI-1 7.0   117 102
No Yes Plasmodium knowlesi strain H   110 101
No Yes Plasmodium yoelii ssp. yoelii 1   99 92
No Yes Plasmodium chabaudi   109 95
No Yes Plasmodium berghei ANKA   106 93
No Yes Symbiodinium minutum clade B1 v1.2   313 287
No Yes Naegleria gruberi   278 252
No Yes Trichomonas vaginalis   582 530
No Yes Guillardia theta CCMP2712 v1.0   390 336
No Yes Emiliania huxleyi CCMP1516   218 216
No Yes Leptolyngbya sp. PCC 7376   17 12
No Yes Pseudanabaena sp. PCC 7367   8 8
No Yes Acaryochloris marina MBIC11017   61 36
No Yes Synechocystis sp. PCC 6803   9 6
No Yes Thermosynechococcus sp. NK55   2 2
No Yes Thermosynechococcus elongatus BP-1   2 2
No Yes Synechococcus sp. PCC 7502   9 9
No Yes Synechococcus sp. PCC 6312   7 5
No Yes Prochlorococcus marinus str. MIT 9515   1 1
No Yes Microcoleus sp. PCC 7113   56 41
No Yes Trichodesmium erythraeum IMS101   26 21
No Yes Geitlerinema sp. PCC 7407   10 7
No Yes Cyanothece sp. PCC 8802   14 10
No Yes Gloeocapsa sp. PCC 7428   13 10
No Yes Halothece sp. PCC 7418   3 3
No Yes Microcystis aeruginosa NIES-843   18 13
No Yes Gloeobacter violaceus PCC 7421   25 13
No Yes Rivularia sp. PCC 7116   40 31
No Yes Calothrix sp. PCC 7507   30 23
No Yes Anabaena variabilis ATCC 29413   41 26
No Yes 'Nostoc azollae' 0708   9 9
No Yes Nostoc sp. PCC 7107   23 17
No Yes Nostoc punctiforme PCC 73102   44 28
No Yes Nostoc sp. PCC 7120   35 24
No Yes Nostoc sp. PCC 7524   36 25
No Yes Anabaena sp. 90   22 17
No Yes Ilumatobacter coccineus   1 1
No Yes Modestobacter marinus   1 1
No Yes Blastococcus saxobsidens DD2   1 1
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Catenulispora acidiphila DSM 44928   8 6
No Yes Stackebrandtia nassauensis DSM 44728   4 3
No Yes Frankia symbiont of Datisca glomerata   9 8
No Yes Frankia sp. EAN1pec   24 21
No Yes Frankia alni ACN14a   20 18
No Yes Thermobifida fusca YX   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   2 1
No Yes Thermomonospora curvata DSM 43183   9 7
No Yes Streptosporangium roseum DSM 43021   14 11
No Yes Kitasatospora setae KM-6054   11 5
No Yes Streptomyces coelicolor A3(2)   5 3
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   3 2
No Yes Streptomyces griseus subsp. griseus NBRC 13350   5 4
No Yes Streptomyces bingchenggensis BCW-1   14 11
No Yes Streptomyces violaceusniger Tu 4113   4 3
No Yes Streptomyces avermitilis MA-4680   2 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces scabiei 87.22   3 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   4 3
No Yes Actinosynnema mirum DSM 43827   4 3
No Yes Pseudonocardia dioxanivorans CB1190   2 1
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Amycolatopsis mediterranei U32   7 3
No Yes Nocardioides sp. JS614   1 1
No Yes Propionibacterium propionicum F0230a   3 3
No Yes Verrucosispora maris AB-18-032   2 1
No Yes Micromonospora sp. L5   4 2
No Yes Micromonospora aurantiaca ATCC 27029   6 3
No Yes Actinoplanes sp. N902-109   4 3
No Yes Actinoplanes sp. SE50/110   9 7
No Yes Actinoplanes missouriensis 431   4 4
No Yes Gordonia sp. KTR9   2 1
No Yes Gordonia polyisoprenivorans VH2   1 1
No Yes Gordonia bronchialis DSM 43247   1 1
No Yes Rhodococcus equi 103S   2 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Nocardia cyriacigeorgica GUH-2   2 1
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Amycolicicoccus subflavus DQS3-9A1   2 1
No Yes Mycobacterium gilvum PYR-GCK   1 1
No Yes Mycobacterium marinum M   2 1
No Yes Cellulomonas fimi ATCC 484   2 2
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   5 3
No Yes Anaerolinea thermophila UNI-1   2 2
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Roseiflexus sp. RS-1   12 6
No Yes Roseiflexus castenholzii DSM 13941   1 1
No Yes Chloroflexus sp. MS-G   8 5
No Yes Chloroflexus sp. Y-400-fl   4 3
No Yes Chloroflexus aggregans DSM 9485   6 4
No Yes Chloroflexus aurantiacus J-10-fl   4 3
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Marinithermus hydrothermalis DSM 14884   2 2
No Yes Meiothermus silvanus DSM 9946   1 1
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Clostridium cellulolyticum H10   1 1
No Yes Ruminococcus albus 7   1 1
No Yes Pelotomaculum thermopropionicum SI   1 1
No Yes Syntrophobotulus glycolicus DSM 8271   1 1
No Yes Desulfotomaculum reducens MI-1   1 1
No Yes Alkaliphilus oremlandii OhILAs   1 1
No Yes Clostridium ljungdahlii DSM 13528   1 1
No Yes Clostridium botulinum A str. ATCC 3502   1 1
No Yes Clostridium acetobutylicum ATCC 824   1 1
No Yes Thermodesulfobium narugense DSM 14796   4 2
No Yes Thermoanaerobacter wiegelii Rt8.B1   1 1
No Yes Streptococcus agalactiae A909   1 1
No Yes Exiguobacterium sp. MH3   1 1
No Yes Paenibacillus terrae HPL-003   2 2
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Bacillus pumilus SAFR-032   1 1
No Yes Melioribacter roseus P3M   1 1
No Yes Ignavibacterium album JCM 16511   1 1
No Yes Pelodictyon phaeoclathratiforme BU-1   3 2
No Yes Chlorobium luteolum DSM 273   1 1
No Yes Chlorobium chlorochromatii CaD3   1 1
No Yes Chlorobium phaeobacteroides DSM 266   3 2
No Yes Chlorobium phaeovibrioides DSM 265   1 1
No Yes Chlorobium limicola DSM 245   1 1
No Yes Chlorobaculum parvum NCIB 8327   3 2
No Yes Chlorobium tepidum TLS   1 1
No Yes Chloroherpeton thalassium ATCC 35110   9 8
No Yes Prosthecochloris aestuarii DSM 271   3 2
No Yes Haliscomenobacter hydrossis DSM 1100   27 18
No Yes Saprospira grandis str. Lewin   3 3
No Yes Niastella koreensis GR20-10   2 2
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Flexibacter litoralis DSM 6794   4 3
No Yes Marivirga tractuosa DSM 4126   3 3
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Dyadobacter fermentans DSM 18053   2 2
No Yes Cytophaga hutchinsonii ATCC 33406   4 4
No Yes Spirosoma linguale DSM 74   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Paludibacter propionicigenes WB4   1 1
No Yes Odoribacter splanchnicus DSM 20712   2 2
No Yes Bacteroides helcogenes P 36-108   1 1
No Yes Bacteroides fragilis YCH46   2 2
No Yes Pedobacter saltans DSM 12145   1 1
No Yes Solitalea canadensis DSM 3403   1 1
No Yes Pedobacter heparinus DSM 2366   1 1
No Yes Sphingobacterium sp. 21   1 1
No Yes Owenweeksia hongkongensis DSM 17368   1 1
No Yes Maribacter sp. HTCC2170   2 2
No Yes Croceibacter atlanticus HTCC2559   1 1
No Yes Muricauda ruestringensis DSM 13258   1 1
No Yes Cellulophaga algicola DSM 14237   1 1
No Yes Polaribacter sp. MED152   1 1
No Yes Capnocytophaga canimorsus Cc5   1 1
No Yes Waddlia chondrophila WSU 86-1044   1 1
No Yes Candidatus Protochlamydia amoebophila UWE25   6 6
No Yes Parachlamydia acanthamoebae UV-7   7 7
No Yes Simkania negevensis Z   1 1
No Yes Isosphaera pallida ATCC 43644   8 7
No Yes Planctomyces brasiliensis DSM 5305   9 7
No Yes Planctomyces limnophilus DSM 3776   7 6
No Yes Rhodopirellula baltica SH 1   11 11
No Yes Pirellula staleyi DSM 6068   15 14
No Yes Opitutus terrae PB90-1   2 2
No Yes Turneriella parva DSM 21527   2 2
No Yes Borrelia garinii PBi   1 1
No Yes Borrelia bissettii DN127   1 1
No Yes Borrelia afzelii PKo   2 2
No Yes Borrelia burgdorferi B31   1 1
No Yes Borrelia recurrentis A1   1 1
No Yes Borrelia duttonii Ly   1 1
No Yes Borrelia crocidurae str. Achema   2 2
No Yes Borrelia turicatae 91E135   1 1
No Yes Borrelia hermsii DAH   1 1
No Yes Spirochaeta smaragdinae DSM 11293   1 1
No Yes Treponema primitia ZAS-2   3 2
No Yes Treponema brennaborense DSM 12168   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Treponema denticola ATCC 35405   1 1
No Yes Thermodesulfobacterium sp. OPB45   2 2
No Yes Desulfurispirillum indicum S5   1 1
No Yes Calditerrivibrio nitroreducens DSM 19672   3 3
No Yes Marinitoga piezophila KA3   2 2
No Yes Petrotoga mobilis SJ95   1 1
No Yes Mesotoga prima MesG1.Ag.4.2   1 1
No Yes Kosmotoga olearia TBF 19.5.1   1 1
No Yes Fervidobacterium pennivorans DSM 9078   1 1
No Yes Fervidobacterium nodosum Rt17-B1   4 2
No Yes Thermosipho africanus TCF52B   1 1
No Yes Thermotoga sp. RQ2   2 2
No Yes Thermotoga naphthophila RKU-10   2 2
No Yes Thermotoga petrophila RKU-1   3 3
No Yes Thermotoga neapolitana DSM 4359   1 1
No Yes Thermotoga maritima MSB8   3 3
No Yes Desulfurobacterium thermolithotrophum DSM 11699   1 1
No Yes Sulfurihydrogenibium sp. YO3AOP1   2 2
No Yes Persephonella marina EX-H1   1 1
No Yes Caldisericum exile AZM16c01   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   2 2
No Yes Candidatus Solibacter usitatus Ellin6076   2 2
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Candidatus Koribacter versatilis Ellin345   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Candidatus Nitrospira defluvii   2 2
No Yes Streptobacillus moniliformis DSM 12112   1 1
No Yes Sebaldella termitidis ATCC 33386   2 2
No Yes Nautilia profundicola AmH   3 3
No Yes Nitratifractor salsuginis DSM 16511   1 1
No Yes Sulfurospirillum deleyianum DSM 6946   1 1
No Yes Sulfurospirillum barnesii SES-3   1 1
No Yes Arcobacter sp. L   2 2
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes Arcobacter butzleri RM4018   2 2
No Yes Campylobacter hominis ATCC BAA-381   1 1
No Yes Campylobacter lari RM2100   1 1
No Yes Campylobacter curvus 525.92   3 3
No Yes Campylobacter concisus 13826   4 4
No Yes Campylobacter jejuni subsp. doylei 269.97   1 1
No Yes Campylobacter sp. 03-427   3 3
No Yes Campylobacter fetus subsp. fetus 82-40   3 3
No Yes uncultured Sulfuricurvum sp. RIFRC-1   3 3
No Yes Sulfuricurvum kujiense DSM 16994   4 4
No Yes Sulfurimonas autotrophica DSM 16294   2 2
No Yes Sulfurimonas denitrificans DSM 1251   2 2
No Yes Wolinella succinogenes DSM 1740   5 5
No Yes Helicobacter cetorum MIT 00-7128   1 1
No Yes Helicobacter bizzozeronii CIII-1   1 1
No Yes Helicobacter hepaticus ATCC 51449   2 2
No Yes Helicobacter mustelae 12198   2 2
No Yes Helicobacter cinaedi PAGU611   1 1
No Yes Helicobacter pylori B38   1 1
No Yes Nitratiruptor sp. SB155-2   2 2
No Yes Sulfurovum sp. NBC37-1   1 1
No Yes Desulfomonile tiedjei DSM 6799   3 3
No Yes Syntrophobacter fumaroxidans MPOB   1 1
No Yes Desulfurivibrio alkaliphilus AHT2   1 1
No Yes Desulfatibacillum alkenivorans AK-01   1 1
No Yes Desulfovibrio magneticus RS-1   1 1
No Yes Desulfovibrio africanus str. Walvis Bay   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Geobacter metallireducens GS-15   2 1
No Yes Pelobacter propionicus DSM 2379   1 1
No Yes Babela massiliensis   2 2
No Yes Haliangium ochraceum DSM 14365   34 21
No Yes Sorangium cellulosum 'So ce 56'   19 11
No Yes Anaeromyxobacter sp. Fw109-5   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-1   1 1
No Yes Stigmatella aurantiaca DW4/3-1   7 5
No Yes Corallococcus coralloides DSM 2259   6 5
No Yes Myxococcus xanthus DK 1622   6 4
No Yes Myxococcus fulvus HW-1   3 2
No Yes Dechloromonas aromatica RCB   1 1
No Yes Thauera sp. MZ1T   2 1
No Yes Azoarcus sp. KH32C   1 1
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   10 5
No Yes Leptothrix cholodnii SP-6   3 1
No Yes Burkholderia rhizoxinica HKI 454   1 1
No Yes Burkholderia phymatum STM815   1 1
No Yes Ralstonia eutropha JMP134   2 1
No Yes Burkholderia sp. CCGE1002   2 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia mallei SAVP1   1 1
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia gladioli BSR3   2 1
No Yes Burkholderia glumae BGR1   2 1
No Yes Magnetococcus marinus MC-1   2 2
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Ruegeria sp. TM1040   1 1
No Yes Ruegeria pomeroyi DSS-3   1 1
No Yes Roseobacter litoralis Och 149   1 1
No Yes Roseobacter denitrificans OCh 114   2 2
No Yes Tistrella mobilis KA081020-065   2 1
No Yes Rhodospirillum rubrum F11   2 1
No Yes Azospirillum brasilense Sp245   2 2
No Yes Gluconacetobacter xylinus NBRC 3288   3 3
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Methylobacterium chloromethanicum CM4   1 1
No Yes Methylobacterium extorquens AM1   1 1
No Yes Methylobacterium sp. 4-46   1 1
No Yes Methylobacterium populi BJ001   1 1
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Methylobacterium radiotolerans JCM 2831   1 1
No Yes Sinorhizobium fredii NGR234   2 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Mesorhizobium sp. BNC1   1 1
No Yes Mesorhizobium opportunistum WSM2075   2 2
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Mesorhizobium loti MAFF303099   3 3
No Yes Hyphomicrobium sp. MC1   2 2
No Yes Hyphomicrobium denitrificans ATCC 51888   1 1
No Yes Nitrobacter winogradskyi Nb-255   1 1
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Bradyrhizobium sp. ORS 278   1 1
No Yes Bartonella tribocorum CIP 105476   1 1
No Yes Bartonella clarridgeiae 73   1 1
No Yes Bartonella henselae str. Houston-1   1 1
No Yes Bartonella grahamii as4aup   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Cellvibrio japonicus Ueda107   3 3
No Yes Aggregatibacter actinomycetemcomitans D7S-1   2 2
No Yes Tolumonas auensis DSM 9187   1 1
No Yes Aeromonas veronii B565   1 1
No Yes Aeromonas salmonicida subsp. salmonicida A449   1 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   1 1
No Yes Aliivibrio salmonicida LFI1238   1 1
No Yes Vibrio fischeri MJ11   1 1
No Yes Psychromonas sp. CNPT3   2 2
No Yes Idiomarina loihiensis L2TR   1 1
No Yes Ferrimonas balearica DSM 9799   2 2
No Yes Shewanella loihica PV-4   1 1
No Yes Shewanella sediminis HAW-EB3   1 1
No Yes Shewanella pealeana ATCC 700345   1 1
No Yes Shewanella baltica OS185   1 1
No Yes Shewanella sp. MR-4   1 1
No Yes Shewanella amazonensis SB2B   1 1
No Yes Shewanella violacea DSS12   1 1
No Yes Shewanella frigidimarina NCIMB 400   1 1
No Yes Colwellia psychrerythraea 34H   3 3
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Pseudoalteromonas haloplanktis TAC125   1 1
No Yes Alteromonas sp. SN2   1 1
No Yes Kangiella koreensis DSM 16069   2 2
No Yes Hahella chejuensis KCTC 2396   3 3
No Yes Marinomonas posidonica IVIA-Po-181   1 1
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Methylomicrobium alcaliphilum   1 1
No Yes Methylomonas methanica MC09   4 4
No Yes Alkalilimnicola ehrlichii MLHE-1   1 1
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   1 1
No Yes Thioalkalivibrio sp. K90mix   1 1
No Yes Halorhodospira halophila SL1   1 1
No Yes Thiocystis violascens DSM 198   3 2
No Yes Nitrosococcus watsonii C-113   1 1
No Yes Nitrosococcus halophilus Nc4   2 2
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes Photorhabdus asymbiotica   2 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   3 2
No Yes Xenorhabdus bovienii SS-2004   1 1
No Yes Providencia stuartii MRSN 2154   1 1
No Yes Yersinia pseudotuberculosis IP 31758   2 2
No Yes Sodalis glossinidius str. 'morsitans'   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas entomophila L48   1 1
No Yes Pseudomonas stutzeri A1501   1 1
No Yes Pseudomonas fulva 12-X   1 1
No Yes Pseudomonas putida F1   1 1
No Yes Pseudomonas protegens Pf-5   3 2
No Yes Pseudomonas mendocina ymp   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Pseudomonas sp. VLB120   1 1
No Yes Methylophaga sp. JAM1   2 2
No Yes Thiomicrospira crunogena XCL-2   1 1
No Yes Cenarchaeum symbiosum A   1 1
No Yes Fervidicoccus fontis Kam940   1 1
No Yes Hyperthermus butylicus DSM 5456   1 1
No Yes Ignicoccus hospitalis KIN4/I   2 2
No Yes Staphylothermus hellenicus DSM 12710   1 1
No Yes Thermoproteus neutrophilus V24Sta   1 1
No Yes Methanocella paludicola SANAE   2 2
No Yes Methanosaeta harundinacea 6Ac   5 4
No Yes Methanosaeta concilii GP6   1 1
No Yes Methanosalsum zhilinae DSM 4017   1 1
No Yes Methanosarcina acetivorans C2A   2 1
No Yes Methanosarcina barkeri str. Fusaro   5 4
No Yes Thermococcus barophilus MP   1 1
No Yes Methanobrevibacter ruminantium M1   2 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 666 610
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 342 303
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 226 206
No Yes Ascaris suum Victoria/Ghent Pig roundworm 185 175
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 218 199
No Yes Cryptococcus neoformans var. grubii H99   128 119
No Yes Cryptococcus neoformans B-3501A   122 116
No Yes Cryptococcus neoformans JEC21   120 113
No Yes Paracoccidioides brasiliensis Pb01   131 123
No Yes Paracoccidioides brasiliensis Pb03   137 127
No Yes Coccidioides posadasii str. Silveira   127 119
No Yes Coccidioides immitis RMSCC 3703   116 111
No Yes Coccidioides immitis RMSCC 2394   131 121
No Yes Coccidioides immitis H538.4   118 114
No Yes Ajellomyces dermatitidis ER-3   140 132
No Yes Histoplasma capsulatum H143   128 121
No Yes Histoplasma capsulatum H88   136 127
No Yes Histoplasma capsulatum G186AR   143 131
No Yes Aspergillus fumigatus A1163   146 132
No Yes Candida albicans WO-1   113 105
No Yes Saccharomyces cerevisiae UC5   106 93
No Yes Saccharomyces cerevisiae PW5   111 99
No Yes Saccharomyces cerevisiae FL100   54 48
No Yes Saccharomyces cerevisiae CLIB382   3 3
No Yes Saccharomyces cerevisiae CLIB324   58 51
No Yes Saccharomyces cerevisiae CBS7960   93 83
No Yes Saccharomyces cerevisiae YJM269   94 85
No Yes Saccharomyces cerevisiae T7   125 112
No Yes Saccharomyces cerevisiae FostersB   103 96
No Yes Saccharomyces cerevisiae FostersO   100 93
No Yes Saccharomyces cerevisiae VL3   113 103
No Yes Saccharomyces cerevisiae Vin13   113 103
No Yes Saccharomyces cerevisiae LalvinQA23   109 100
No Yes Saccharomyces cerevisiae AWRI796   103 99
No Yes Saccharomyces cerevisiae Sigma1278b   125 112
No Yes Saccharomyces cerevisiae W303   122 109
No Yes Saccharomyces cerevisiae JAY291   124 110
No Yes Saccharomyces cerevisiae AWRI1631   85 79
No Yes Saccharomyces cerevisiae YPS163   36 34
No Yes Saccharomyces cerevisiae M22   33 31
No Yes Saccharomyces cerevisiae T73   46 43
No Yes Saccharomyces cerevisiae CLIB215   77 70
No Yes Saccharomyces cerevisiae Y10   30 30
No Yes Saccharomyces cerevisiae YJM789   125 111
No Yes Saccharomyces cerevisiae YJM789   124 110
No Yes Saccharomyces cerevisiae RM11-1a   122 109
No Yes Saccharomyces cerevisiae RM11-1a   121 108
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 124 111
No Yes Schizosaccharomyces pombe 972h-   146 134
No Yes Batrachochytrium dendrobatidis JEL423   225 201
No Yes Batrachochytrium dendrobatidis JAM81   215 193
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 261 237
No Yes Hordeum vulgare 22 Domesticated barley 567 557
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 267 252
No Yes Trypanosoma brucei Lister 427 v4.1   180 163
No Yes Neospora caninum Nc-Liverpool 6.2   121 110
No Yes Plasmodium falciparum HB3   101 87
No Yes Plasmodium falciparum Dd2   81 73
No Yes Chroococcidiopsis thermalis PCC 7203   22 16
No Yes Chamaesiphon minutus PCC 6605   36 24
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   7 5
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   7 5
No Yes Synechocystis sp. PCC 6803 substr. GT-I   7 5
No Yes Synechocystis sp. PCC 6803   9 6
No Yes Dactylococcopsis salina PCC 8305   4 4
No Yes Synechococcus sp. JA-3-3Ab   1 1
No Yes Synechococcus sp. PCC 7002   3 3
No Yes Prochlorococcus marinus str. NATL1A   1 1
No Yes Prochlorococcus marinus str. MIT 9301   1 1
No Yes Prochlorococcus marinus str. AS9601   1 1
No Yes Prochlorococcus marinus subsp. marinus str. CCMP1375   1 1
No Yes Prochlorococcus marinus subsp. pastoris str. CCMP1986   1 1
No Yes Prochlorococcus marinus str. MIT 9215   1 1
No Yes Prochlorococcus marinus str. MIT 9211   1 1
No Yes Prochlorococcus marinus str. MIT 9312   1 1
No Yes Prochlorococcus marinus str. MIT 9303   1 1
No Yes Prochlorococcus marinus str. NATL2A   1 1
No Yes Crinalium epipsammum PCC 9333   35 24
No Yes Oscillatoria nigro-viridis PCC 7112   34 25
No Yes Oscillatoria acuminata PCC 6304   66 51
No Yes Arthrospira platensis NIES-39   31 24
No Yes Cyanothece sp. PCC 7822   37 24
No Yes Cyanothece sp. PCC 7425   11 8
No Yes Cyanothece sp. PCC 7424   29 18
No Yes Cyanothece sp. ATCC 51142   21 14
No Yes Cyanothece sp. PCC 8801   12 9
No Yes Cyanobacterium aponinum PCC 10605   6 6
No Yes Cyanobacterium stanieri PCC 7202   3 3
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   12 8
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   9 8
No Yes Stanieria cyanosphaera PCC 7437   18 12
No Yes Calothrix parietina Calothrix sp. PCC 6303   44 30
No Yes Cylindrospermum stagnale PCC 7417   38 25
No Yes Anabaena cylindrica PCC 7122   24 18
No Yes Spiroplasma chrysopicola DF-1   1 1
No Yes Frankia sp. EuI1c   33 27
No Yes Frankia sp. CcI3   9 8
No Yes Nocardiopsis alba ATCC BAA-2165   2 2
No Yes Streptomyces rapamycinicus NRRL 5491   4 3
No Yes Streptomyces davawensis JCM 4913   7 5
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces collinus Tu 365   7 4
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   4 3
No Yes Saccharothrix espanaensis DSM 44229   5 5
No Yes Amycolatopsis mediterranei RB   7 3
No Yes Amycolatopsis mediterranei S699   7 3
No Yes Amycolatopsis mediterranei S699   7 3
No Yes Amycolatopsis orientalis HCCB10007   7 4
No Yes Actinoplanes friuliensis DSM 7358   2 1
No Yes Rhodococcus pyridinivorans SB3094   3 2
No Yes Nocardia brasiliensis ATCC 700358   9 4
No Yes Mycobacterium gilvum Spyr1   1 1
No Yes Mycobacterium kansasii ATCC 12478   2 2
No Yes Bifidobacterium asteroides PRL2011   2 2
No Yes Actinomyces graevenitzii C83   1 1
No Yes Actinomyces viscosus C505   1 1
No Yes Chthonomonas calidirosea T49   4 4
No Yes Thermus thermophilus HB8   1 1
No Yes Desulfosporosinus meridiei DSM 13257   2 1
No Yes Desulfotomaculum gibsoniae DSM 7213   1 1
No Yes Candidatus Arthromitus sp. SFB-rat-Yit   1 1
No Yes Clostridium autoethanogenum DSM 10061   1 1
No Yes Clostridium botulinum H04402 065   1 1
No Yes Clostridium botulinum F str. 230613   1 1
No Yes Clostridium botulinum F str. Langeland   1 1
No Yes Clostridium botulinum B1 str. Okra   1 1
No Yes Clostridium botulinum Ba4 str. 657   1 1
No Yes Clostridium botulinum A2 str. Kyoto   1 1
No Yes Clostridium botulinum A3 str. Loch Maree   1 1
No Yes Clostridium botulinum A str. Hall   1 1
No Yes Clostridium botulinum A str. ATCC 19397   1 1
No Yes Clostridium acetobutylicum DSM 1731   1 1
No Yes Clostridium acetobutylicum EA 2018   1 1
No Yes Streptococcus iniae SF1   1 1
No Yes Streptococcus agalactiae ILRI112   1 1
No Yes Streptococcus agalactiae ILRI005   1 1
No Yes Streptococcus agalactiae 09mas018883   1 1
No Yes Streptococcus agalactiae GD201008-001   1 1
No Yes Streptococcus agalactiae NEM316   1 1
No Yes Streptococcus agalactiae 2603V/R   1 1
No Yes Paenibacillus polymyxa CR1   1 1
No Yes Paenibacillus polymyxa E681   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus AH187   1 1
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus NC7401   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Chlorobium phaeobacteroides BS1   1 1
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Emticicia oligotrophica DSM 17448   2 2
No Yes Bacteroides xylanisolvens XB1A   1 1
No Yes Bacteroides fragilis 638R   2 2
No Yes Bacteroides fragilis NCTC 9343   2 2
No Yes Psychroflexus torquis ATCC 700755   3 3
No Yes Singulisphaera acidiphila DSM 18658   40 27
No Yes Borrelia garinii NMJW1   1 1
No Yes Borrelia garinii BgVir   1 1
No Yes Borrelia afzelii HLJ01   2 2
No Yes Borrelia afzelii PKo   2 2
No Yes Borrelia burgdorferi CA382   1 1
No Yes Borrelia burgdorferi JD1   1 1
No Yes Borrelia burgdorferi N40   1 1
No Yes Borrelia burgdorferi ZS7   1 1
No Yes Borrelia miyamotoi LB-2001   2 2
No Yes Treponema pedis str. T A4   1 1
No Yes Thermotoga maritima MSB8   3 3
No Yes Arcobacter butzleri 7h1h   2 2
No Yes Arcobacter butzleri ED-1   2 2
No Yes Campylobacter jejuni Waterborne C.jejuni Outbreak   2 2
No Yes Campylobacter jejuni RM1221   2 2
No Yes Campylobacter jejuni subsp. jejuni 00-2544   2 2
No Yes Campylobacter jejuni subsp. jejuni 00-2538   2 2
No Yes Campylobacter jejuni subsp. jejuni 00-2426   2 2
No Yes Campylobacter jejuni subsp. jejuni 00-2425   2 2
No Yes Campylobacter jejuni subsp. jejuni PT14   2 2
No Yes Campylobacter jejuni subsp. jejuni ICDCCJ07001   3 3
No Yes Campylobacter jejuni subsp. jejuni S3   2 2
No Yes Campylobacter jejuni subsp. jejuni M1   2 2
No Yes Campylobacter jejuni subsp. jejuni IA3902   2 2
No Yes Campylobacter jejuni subsp. jejuni 81116   2 2
No Yes Campylobacter jejuni subsp. jejuni 81-176   2 2
No Yes Campylobacter jejuni subsp. jejuni NCTC 11168-BN148   2 2
No Yes Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819   2 2
No Yes Campylobacter coli 76339   2 2
No Yes Campylobacter coli 15-537360   2 2
No Yes Campylobacter coli CVM N29710   2 2
No Yes Helicobacter cetorum MIT 99-5656   1 1
No Yes Helicobacter pylori BM012S   1 1
No Yes Helicobacter pylori BM012A   1 1
No Yes Helicobacter pylori SouthAfrica20   1 1
No Yes Helicobacter pylori UM298   1 1
No Yes Helicobacter pylori UM066   1 1
No Yes Helicobacter pylori UM037   1 1
No Yes Helicobacter pylori UM299   1 1
No Yes Helicobacter pylori UM032   1 1
No Yes Helicobacter pylori OK310   1 1
No Yes Helicobacter pylori OK113   1 1
No Yes Helicobacter pylori Rif2   1 1
No Yes Helicobacter pylori Rif1   1 1
No Yes Helicobacter pylori HUP-B14   1 1
No Yes Helicobacter pylori PeCan18   1 1
No Yes Helicobacter pylori Shi169   1 1
No Yes Helicobacter pylori Shi112   1 1
No Yes Helicobacter pylori Shi417   1 1
No Yes Helicobacter pylori XZ274   1 1
No Yes Helicobacter pylori Aklavik117   1 1
No Yes Helicobacter pylori SNT49   1 1
No Yes Helicobacter pylori Puno135   1 1
No Yes Helicobacter pylori Puno120   1 1
No Yes Helicobacter pylori ELS37   1 1
No Yes Helicobacter pylori Gambia94/24   1 1
No Yes Helicobacter pylori SouthAfrica7   1 1
No Yes Helicobacter pylori India7   1 1
No Yes Helicobacter pylori Lithuania75   1 1
No Yes Helicobacter pylori 2017   1 1
No Yes Helicobacter pylori 2018   1 1
No Yes Helicobacter pylori 908   1 1
No Yes Helicobacter pylori F57   1 1
No Yes Helicobacter pylori F30   1 1
No Yes Helicobacter pylori F16   1 1
No Yes Helicobacter pylori Sat464   1 1
No Yes Helicobacter pylori Cuz20   1 1
No Yes Helicobacter pylori PeCan4   1 1
No Yes Helicobacter pylori SJM180   1 1
No Yes Helicobacter pylori B8   1 1
No Yes Helicobacter pylori 52   1 1
No Yes Helicobacter pylori v225d   1 1
No Yes Helicobacter pylori 83   1 1
No Yes Helicobacter pylori 35A   1 1
No Yes Helicobacter pylori P12   1 1
No Yes Helicobacter pylori G27   1 1
No Yes Helicobacter pylori Shi470   1 1
No Yes Helicobacter pylori HPAG1   1 1
No Yes Helicobacter pylori 51   1 1
No Yes Helicobacter pylori F32   1 1
No Yes Helicobacter pylori 26695   1 1
No Yes Helicobacter pylori 26695   1 1
No Yes Desulfobacula toluolica Tol2   2 2
No Yes Desulfovibrio hydrothermalis AM13 = DSM 14728   2 2
No Yes Sorangium cellulosum So0157-2   14 7
No Yes Anaeromyxobacter sp. K   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-C   2 1
No Yes Myxococcus stipitatus DSM 14675   8 7
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia mallei NCTC 10229   1 1
No Yes Burkholderia mallei NCTC 10247   1 1
No Yes Burkholderia mallei ATCC 23344   1 1
No Yes Candidatus Symbiobacter mobilis Comamonadaceae bacterium CR   7 4
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   1 1
No Yes Magnetospirillum gryphiswaldense MSR-1 v2   1 1
No Yes Rhodospirillum rubrum ATCC 11170   2 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Gluconobacter oxydans H24   1 1
No Yes Methylobacterium extorquens DM4   1 1
No Yes Methylobacterium extorquens PA1   1 1
No Yes Hyphomicrobium nitrativorans NL23   2 2
No Yes Hyphomicrobium denitrificans 1NES1   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Bartonella vinsonii subsp. berkhoffii str. Winnie   1 1
No Yes Aeromonas hydrophila ML09-119   1 1
No Yes Vibrio fischeri ES114   1 1
No Yes Vibrio sp. EJY3   1 1
No Yes Idiomarina loihiensis GSL 199   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS223   1 1
No Yes Shewanella sp. MR-7   1 1
No Yes Thalassolituus oleivorans MIL-1   1 1
No Yes Thioflavicoccus mobilis 8321   2 1
No Yes Dickeya dadantii 3937   2 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas stutzeri CCUG 29243   1 1
No Yes Pseudomonas stutzeri DSM 4166   1 1
No Yes Pseudomonas stutzeri RCH2   1 1
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   1 1
No Yes Pseudomonas putida NBRC 14164   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas protegens CHA0   3 2
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas fluorescens Pf0-1   1 1
No Yes Pseudomonas mendocina NK-01   1 1
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   1 1
No Yes Pseudomonas aeruginosa PA1   1 1
No Yes Pseudomonas aeruginosa DK2   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Acinetobacter lwoffii SH145   1 1
No Yes Methylophaga sp. JAM7   2 2
No Yes Methanomethylovorans hollandica DSM 15978   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1378 1295
No Yes Homo sapiens (NCBI version) Human 514 464
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 316 284
No Yes Heliconius numata (Incomplete)   104 104
No Yes Loa loa v3.3 (Request) Eye worm 189 169
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 195 187
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 166 150
No Yes Moniliophthora perniciosa FA553 (Genome survey)   88 88
No Yes Encephalitozoon intestinalis (endoparasite)   52 52
No Yes Encephalitozoon cuniculi (endoparasite)   47 45
No Yes Picea sitchensis (Incomplete) Sitka spruce 18 18
No Yes Lotus japonicus (Early assembly)   287 280
No Yes Malus x domestica (Duplicate) Apple 606 588
No Yes Ricinus communis (Early assembly) Castor bean 247 227
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   496 466
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 282 267
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 293 275
No Yes Phoenix dactylifera (Early draft) Date palm 229 224
No Yes Guillardia theta (nucleomorph)   15 14
No Yes Homo sapiens 69_37 Human 337 308
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 296 262
No Yes Gorilla gorilla 69_3.1 Western gorilla 312 285
No Yes Pongo abelii 69_2 Sumatran orangutan 298 272
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 292 263
No Yes Macaca mulatta 69_1 Rhesus monkey 313 287
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 319 290
No Yes Otolemur garnettii 69_3 Small-eared galago 318 283
No Yes Microcebus murinus 69_1 Gray mouse lemur 255 236
No Yes Rattus norvegicus 69_3.4 Norway rat 300 270
No Yes Mus musculus 69_38 House mouse 321 292
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 288 249
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 285 260
No Yes Cavia porcellus 69_3 Domestic guinea pig 307 276
No Yes Oryctolagus cuniculus 69_2 Rabbit 304 272
No Yes Ochotona princeps 69 American pika 255 237
No Yes Tupaia belangeri 69 Northern tree shrew 246 228
No Yes Sus scrofa 69_10.2 Pig 326 300
No Yes Bos taurus 69_3.1 Cattle 298 267
No Yes Vicugna pacos 69_1 Alpaca 202 183
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 301 273
No Yes Mustela putorius furo 69_1.0 Domestic ferret 314 285
No Yes Ailuropoda melanoleuca 69_1 Giant panda 315 284
No Yes Canis familiaris 69_3.1 Dog 334 292
No Yes Felis catus 69 Domestic cat 252 228
No Yes Equus caballus 69_2 Horse 311 279
No Yes Myotis lucifugus 69_2.0 Little brown bat 326 289
No Yes Pteropus vampyrus 69_1 Large flying fox 303 272
No Yes Sorex araneus 69_1 European shrew 222 201
No Yes Erinaceus europaeus 69 Western European hedgehog 242 221
No Yes Procavia capensis 69_1 Cape rock hyrax 287 262
No Yes Loxodonta africana 69_3 African savanna elephant 308 279
No Yes Echinops telfairi 69 Small Madagascar hedgehog 249 234
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 235 218
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 206 189
No Yes Macropus eugenii 69_1.0 Tammar wallaby 275 248
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 314 279
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 325 294
No Yes Ornithorhynchus anatinus 69_5 Platypus 288 271
No Yes Petromyzon marinus 69_7.0 Sea lamprey 173 159
No Yes Meleagris gallopavo 69_2 Turkey 275 248
No Yes Gallus gallus 69_2 Chicken 269 236
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 294 266
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 283 250
No Yes Anolis carolinensis 69_2.0 Green anole 288 257
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 307 275
No Yes Latimeria chalumnae 69_1 Coelacanth 312 275
No Yes Gadus morhua 69_1 Atlantic cod 316 287
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 325 296
No Yes Takifugu rubripes 69_4 Torafugu 323 292
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 324 291
No Yes Oryzias latipes 69_1 Japanese medaka 305 268
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 334 298
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 321 288
No Yes Danio rerio 69_9 Zebrafish 336 307
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 180 167
No Yes Ciona intestinalis 69 Vase tunicate 244 222
No Yes Drosophila melanogaster 69_5 Fruit fly 214 192
No Yes Caenorhabditis elegans 69_215 Roundworm 167 151
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 124 111
No Yes Arabidopsis thaliana 10 Thale cress 275 253
No Yes 1_050719N (meta-genome)   6 6
No Yes 1_Upper_euphotic (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   37 37
No Yes 2_Base_of_chrolophyll_max (meta-genome)   4 4
No Yes 3_050719R (meta-genome)   45 39
No Yes 3_Below_base_of_euphotic (meta-genome)   4 4
No Yes 4_050719Q (meta-genome)   89 85
No Yes 4_Deep_abyss (meta-genome)   5 5
No Yes 5_050719P (meta-genome)   86 84
No Yes 5_Below_upper_mesopelagic (meta-genome)   6 6
No Yes 6_Upper_euphotic (meta-genome)   17 17
No Yes 7_Oxygen_minimum_layer (meta-genome)   3 3
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   5 5
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   5 5
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   8 8
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   26 26
No Yes Bath Hot Springs, filamentous community (meta-genome)   2 2
No Yes Bath Hot Springs, planktonic community (meta-genome)   8 8
No Yes Combined (meta-genome)   4 4
No Yes Core Eukaryotic Genes 458 (CEGMA)   116 99
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   7 7
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   12 12
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   6 6
No Yes Dump bottom (Dump bottom) (meta-genome)   40 40
No Yes Dump top (Dump top) (meta-genome)   43 43
No Yes Endophytic microbiome from Rice (meta-genome)   8 8
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   16 15
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   11 11
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   5 5
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   46 46
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   6 6
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   42 42
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   29 29
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   9 9
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   15 15
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   6 6
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   15 15
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   6 6
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   7 7
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   12 12
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   5 5
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   36 35
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   21 21
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   11 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   53 53
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   46 46
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   10 10
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   12 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   32 31
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   33 33
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   49 48
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   41 41
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   2 2
No Yes Human Gut Community Subject 8 (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   3 3
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   77 77
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   58 58
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   8 8
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   183 183
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   69 69
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   9 9
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   50 50
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   46 46
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   11 11
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   113 113
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   57 57
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   6 6
No Yes NCBI 2017_08 genome   319540 286080
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   87 87
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   2 2
No Yes Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   5080 4709
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   49 49
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   27 27
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   21 21
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   24 22
No Yes Sludge/US, Jazz Assembly (meta-genome)   8 5
No Yes Sludge/US, Phrap Assembly (meta-genome)   29 20
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   110 110
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   152 152
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   195 194
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   122 122
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   165 164
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   235 235
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   296 296
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   6 6
No Yes STRING v9.0.5 (STRING)   26092 23662
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   33 33
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   98 98
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   50 50
No Yes Termite Protist Endosymbiont Community (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   350512 318914
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   16 16
No Yes Global Ocean Sampling Expedition (GOS)   2039 2029
No Yes NCBI plasmid sequences (Plasmids)   124 71
No Yes NCBI viral sequences (Viral)   28 28
No Yes PDB chains (SCOP 1.75) (PDB)   21 19
No Yes Protein Data Bank (all PDB sequenc)   1049 968
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1740 1738
No Yes TargetDB (Targets)   1318 1220
No Yes UniProt viral sequences (Viral)   11 11

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