WD40 repeat-like superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		88394	88394
No Yes	Homo sapiens 49_36k (all transcripts)	Human	541	539
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	410	409
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	226	222
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	285	285
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	468	465
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	571	564
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	222	220
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	223	221
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	184	182
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	347	345
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	485	482
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	200	200
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	234	233
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	266	262
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	206	205
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	223	223
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	208	208
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	205	205
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	328	324
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	164	163
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	247	244
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	329	327
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	214	214
No Yes	Equus caballus 49_2 (all transcripts)	Horse	284	284
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	213	211
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	238	236
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	181	181
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	210	208
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	239	236
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	214	214
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	220	219
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	195	194
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	240	239
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	439	437
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	329	328
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	246	244
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	252	250
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	241	240
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	282	279
No Yes	Xenopus laevis	African clawed frog	487	485
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	348	347
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	325	324
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	366	363
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	309	307
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	298	297
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	632	625
No Yes	Branchiostoma floridae 1.0	Florida lancelet	434	430
No Yes	Ciona savignyi 49_2f (all transcripts)		345	343
No Yes	Ciona intestinalis 49_2i (all transcripts)		327	326
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	533	533
No Yes	Helobdella robusta		210	210
No Yes	Capitella sp. I		253	252
No Yes	Bombyx mori	Domestic silkworm	187	187
No Yes	Nasonia vitripennis	Jewel wasp	165	165
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	334	334
No Yes	Drosophila grimshawi 1.3		193	192
No Yes	Drosophila willistoni 1.3		178	177
No Yes	Drosophila pseudoobscura 2.3		185	185
No Yes	Drosophila persimilis 1.3		199	198
No Yes	Drosophila yakuba 1.3		170	170
No Yes	Drosophila simulans 1.3		152	152
No Yes	Drosophila sechellia 1.3		169	169
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	263	263
No Yes	Drosophila erecta 1.3		169	169
No Yes	Drosophila ananassae 1.3		178	176
No Yes	Drosophila virilis 1.2		172	171
No Yes	Drosophila mojavensis 1.3		169	169
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	201	201
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	225	225
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	179	178
No Yes	Tribolium castaneum 3.0	Red flour beetle	187	187
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	201	201
No Yes	Acyrthosiphon pisum	Pea aphid	184	183
No Yes	Daphnia pulex	Common water flea	265	265
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	159	159
No Yes	Lottia gigantea		243	243
No Yes	Pristionchus pacificus		133	133
No Yes	Meloidogyne incognita	Southern root-knot nematode	157	157
No Yes	Meloidogyne hapla		121	121
No Yes	Brugia malayi	Agent of lymphatic filariasis	82	82
No Yes	Caenorhabditis japonica		148	147
No Yes	Caenorhabditis brenneri		118	118
No Yes	Caenorhabditis remanei		173	171
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	224	224
No Yes	Caenorhabditis briggsae 2		153	153
No Yes	Schistosoma mansoni		219	218
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	289	289
No Yes	Hydra magnipapillata		235	235
No Yes	Trichoplax adhaerens		228	225
No Yes	Proterospongia sp. ATCC 50818		176	176
No Yes	Monosiga brevicollis		153	153
No Yes	Capsaspora owczarzaki ATCC 30864		152	152
No Yes	Malassezia globosa CBS 7966		95	95
No Yes	Ustilago maydis		103	102
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		112	112
No Yes	Melampsora laricis-populina		118	118
No Yes	Sporobolomyces roseus IAM 13481		95	95
No Yes	Serpula lacrymans var. lacrymans S7.9		120	120
No Yes	Coprinopsis cinerea okayama7 130		129	129
No Yes	Pleurotus ostreatus	Oyster mushroom	142	142
No Yes	Laccaria bicolor S238N-H82		224	223
No Yes	Agaricus bisporus var. bisporus		129	128
No Yes	Schizophyllum commune		125	125
No Yes	Heterobasidion annosum		117	117
No Yes	Phanerochaete chrysosporium RP-78 2.1		119	119
No Yes	Postia placenta		182	182
No Yes	Tremella mesenterica		97	97
No Yes	Cryptococcus neoformans JEC21		103	103
No Yes	Magnaporthe grisea 70-15		102	101
No Yes	Podospora anserina		114	114
No Yes	Sporotrichum thermophile ATCC 42464		101	101
No Yes	Thielavia terrestris NRRL 8126		105	105
No Yes	Chaetomium globosum CBS 148.51		108	108
No Yes	Neurospora tetrasperma		107	107
No Yes	Neurospora discreta FGSC 8579		103	103
No Yes	Neurospora crassa OR74A		105	105
No Yes	Cryphonectria parasitica	Chestnut blight fungus	114	114
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		129	129
No Yes	Nectria haematococca mpVI		114	114
No Yes	Fusarium verticillioides 7600		103	103
No Yes	Fusarium graminearum		109	109
No Yes	Trichoderma atroviride		128	128
No Yes	Trichoderma reesei 1.2		117	117
No Yes	Trichoderma virens Gv29-8		137	137
No Yes	Verticillium dahliae VdLs.17		105	105
No Yes	Verticillium albo-atrum VaMs.102		102	102
No Yes	Botrytis cinerea B05.10		102	102
No Yes	Sclerotinia sclerotiorum		113	113
No Yes	Alternaria brassicicola		109	109
No Yes	Pyrenophora tritici-repentis		116	116
No Yes	Cochliobolus heterostrophus		113	112
No Yes	Stagonospora nodorum		114	114
No Yes	Mycosphaerella fijiensis CIRAD86		101	101
No Yes	Mycosphaerella graminicola IPO323		113	113
No Yes	Ajellomyces dermatitidis SLH14081		116	116
No Yes	Histoplasma capsulatum class NAmI strain WU24		117	117
No Yes	Microsporum gypseum		116	116
No Yes	Arthroderma benhamiae CBS 112371		111	111
No Yes	Microsporum canis CBS 113480		113	113
No Yes	Trichophyton equinum CBS 127.97		112	112
No Yes	Trichophyton verrucosum HKI 0517		113	113
No Yes	Trichophyton tonsurans CBS 112818		111	111
No Yes	Trichophyton rubrum CBS 118892		114	114
No Yes	Paracoccidioides brasiliensis Pb18		108	108
No Yes	Coccidioides posadasii RMSCC 3488		114	114
No Yes	Coccidioides immitis RS		113	113
No Yes	Uncinocarpus reesii 1704		106	105
No Yes	Aspergillus fumigatus Af293		113	112
No Yes	Neosartorya fischeri NRRL 181		114	114
No Yes	Penicillium chrysogenum Wisconsin 54-1255		117	117
No Yes	Penicillium marneffei ATCC 18224		123	123
No Yes	Aspergillus carbonarius ITEM 5010		113	113
No Yes	Aspergillus terreus NIH2624		116	116
No Yes	Aspergillus oryzae RIB40		116	115
No Yes	Aspergillus niger ATCC 1015		86	86
No Yes	Aspergillus flavus NRRL3357		114	113
No Yes	Aspergillus clavatus NRRL 1		111	111
No Yes	Aspergillus nidulans FGSC A4		114	114
No Yes	Tuber melanosporum Vittad	Perigord truffle	121	121
No Yes	Candida dubliniensis CD36		104	104
No Yes	Candida tropicalis MYA-3404		108	108
No Yes	Candida parapsilosis		108	108
No Yes	Candida albicans SC5314		112	112
No Yes	Yarrowia lipolytica CLIB122		112	112
No Yes	Candida lusitaniae ATCC 42720		101	101
No Yes	Vanderwaltozyma polyspora DSM 70294		108	108
No Yes	Candida glabrata CBS138		107	106
No Yes	Kluyveromyces thermotolerans CBS 6340		105	105
No Yes	Lachancea kluyveri		109	109
No Yes	Kluyveromyces waltii		111	110
No Yes	Lodderomyces elongisporus NRRL YB-4239		97	97
No Yes	Ashbya gossypii ATCC 10895		106	106
No Yes	Debaromyces hansenii		108	108
No Yes	Zygosaccharomyces rouxii		100	100
No Yes	Saccharomyces mikatae MIT		107	107
No Yes	Saccharomyces paradoxus MIT		107	107
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	108	108
No Yes	Saccharomyces bayanus MIT		112	112
No Yes	Candida guilliermondii ATCC 6260		108	108
No Yes	Pichia stipitis CBS 6054		104	104
No Yes	Pichia pastoris GS115		107	107
No Yes	Kluyveromyces lactis		105	105
No Yes	Schizosaccharomyces octosporus yFS286		130	129
No Yes	Schizosaccharomyces japonicus yFS275		128	126
No Yes	Schizosaccharomyces pombe	Fission yeast	124	123
No Yes	Allomyces macrogynus ATCC 38327		280	278
No Yes	Rhizopus oryzae RA 99-880		181	180
No Yes	Phycomyces blakesleeanus		175	175
No Yes	Mucor circinelloides		180	180
No Yes	Encephalitozoon intestinalis		51	51
No Yes	Encephalitozoon cuniculi		46	46
No Yes	Spizellomyces punctatus DAOM BR117		187	186
No Yes	Batrachochytrium dendrobatidis JEL423		179	178
No Yes	Dictyostelium discoideum		198	197
No Yes	Dictyostelium purpureum		185	185
No Yes	Entamoeba dispar		155	155
No Yes	Entamoeba invadens		138	138
No Yes	Entamoeba histolytica 1		166	166
No Yes	Arabidopsis lyrata	Lyrate rockcress	251	249
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	291	291
No Yes	Carica papaya	Papaya	206	206
No Yes	Medicago truncatula	Barrel medic	153	153
No Yes	Glycine max	Soybean	461	459
No Yes	Cucumis sativus	Cucumber	349	349
No Yes	Populus trichocarpa 1.1	Black cottonwood	331	329
No Yes	Vitis vinifera	Wine grape	266	266
No Yes	Brachypodium distachyon		280	280
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	325	323
No Yes	Zea mays subsp. mays	Maize	422	417
No Yes	Sorghum bicolor	Sorghum	209	207
No Yes	Selaginella moellendorffii		345	343
No Yes	Physcomitrella patens subsp. patens		263	262
No Yes	Coccomyxa sp. C-169		120	120
No Yes	Chlorella sp. NC64A		121	121
No Yes	Chlorella vulgaris		124	124
No Yes	Volvox carteri f. nagariensis		157	157
No Yes	Chlamydomonas reinhardtii 4.0		144	144
No Yes	Ostreococcus sp. RCC809		102	102
No Yes	Ostreococcus lucimarinus CCE9901		107	107
No Yes	Ostreococcus tauri		93	93
No Yes	Micromonas sp. RCC299		129	129
No Yes	Micromonas pusilla CCMP1545		131	131
No Yes	Cyanidioschyzon merolae		75	74
No Yes	Giardia lamblia		82	81
No Yes	Trypanosoma cruzi strain CL Brener		252	252
No Yes	Trypanosoma brucei		132	132
No Yes	Leishmania mexicana		122	121
No Yes	Leishmania major strain Friedlin		120	119
No Yes	Leishmania infantum JPCM5		122	121
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		118	116
No Yes	Aureococcus anophagefferens		131	131
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	159	159
No Yes	Phytophthora sojae 1.1		160	160
No Yes	Phytophthora infestans T30-4		192	192
No Yes	Phytophthora capsici		157	157
No Yes	Phaeodactylum tricornutum		90	89
No Yes	Fragilariopsis cylindrus		170	169
No Yes	Thalassiosira pseudonana		109	106
No Yes	Paramecium tetraurelia		800	786
No Yes	Tetrahymena thermophila SB210 1		487	458
No Yes	Babesia bovis T2Bo		74	72
No Yes	Theileria parva		69	69
No Yes	Theileria annulata		72	72
No Yes	Plasmodium falciparum 3D7		97	96
No Yes	Plasmodium vivax SaI-1		99	98
No Yes	Plasmodium knowlesi strain H		96	96
No Yes	Plasmodium yoelii ssp. yoelii 1		87	87
No Yes	Plasmodium chabaudi		119	119
No Yes	Plasmodium berghei ANKA		104	103
No Yes	Cryptosporidium hominis		69	69
No Yes	Cryptosporidium muris		96	96
No Yes	Cryptosporidium parvum Iowa II		84	84
No Yes	Neospora caninum Nc-Liverpool		102	101
No Yes	Neospora caninum		96	95
No Yes	Toxoplasma gondii ME49		105	105
No Yes	Naegleria gruberi		229	229
No Yes	Trichomonas vaginalis		505	500
No Yes	Guillardia theta		15	15
No Yes	Emiliania huxleyi CCMP1516		202	202
No Yes	Brachyspira hyodysenteriae WA1		1	1
No Yes	Borrelia garinii PBi		2	2
No Yes	Borrelia afzelii PKo		2	2
No Yes	Borrelia burgdorferi B31		2	2
No Yes	Borrelia recurrentis A1		1	1
No Yes	Borrelia duttonii Ly		1	1
No Yes	Borrelia turicatae 91E135		1	1
No Yes	Borrelia hermsii DAH		1	1
No Yes	Rhodopirellula baltica SH 1		4	4
No Yes	Pirellula staleyi DSM 6068		8	8
No Yes	Catenulispora acidiphila DSM 44928		3	3
No Yes	Frankia sp. CcI3		6	6
No Yes	Frankia alni ACN14a		11	11
No Yes	Thermomonospora curvata DSM 43183		4	4
No Yes	Streptosporangium roseum DSM 43021		2	2
No Yes	Streptomyces coelicolor A3(2)		1	1
No Yes	Actinosynnema mirum DSM 43827		4	4
No Yes	Saccharopolyspora erythraea NRRL 2338		1	1
No Yes	Gordonia bronchialis DSM 43247		1	1
No Yes	Nocardia farcinica IFM 10152		1	1
No Yes	Mycobacterium marinum M		1	1
No Yes	Deferribacter desulfuricans SSM1		1	1
No Yes	Fervidobacterium nodosum Rt17-B1		3	3
No Yes	Thermosipho africanus TCF52B		1	1
No Yes	Herpetosiphon aurantiacus ATCC 23779		1	1
No Yes	Roseiflexus sp. RS-1		3	3
No Yes	Roseiflexus castenholzii DSM 13941		1	1
No Yes	Chloroflexus sp. Y-400-fl		2	2
No Yes	Chloroflexus aggregans DSM 9485		2	2
No Yes	Chloroflexus aurantiacus J-10-fl		2	2
No Yes	Sulfurihydrogenibium sp. YO3AOP1		1	1
No Yes	Persephonella marina EX-H1		1	1
No Yes	Fibrobacter succinogenes ssp. succinogenes S85		1	1
No Yes	Candidatus Solibacter usitatus Ellin6076		2	2
No Yes	Pelodictyon phaeoclathratiforme BU-1		1	1
No Yes	Pelodictyon luteolum DSM 273		1	1
No Yes	Chlorobium chlorochromatii CaD3		1	1
No Yes	Chlorobium phaeobacteroides DSM 266		2	2
No Yes	Chlorobium phaeovibrioides DSM 265		1	1
No Yes	Chlorobium limicola DSM 245		1	1
No Yes	Chlorobaculum parvum NCIB 8327		2	2
No Yes	Chlorobium tepidum TLS		1	1
No Yes	Chloroherpeton thalassium ATCC 35110		7	7
No Yes	Prosthecochloris aestuarii DSM 271		1	1
No Yes	Bacteroides vulgatus ATCC 8482		2	2
No Yes	Bacteroides thetaiotaomicron VPI-5482		1	1
No Yes	Bacteroides fragilis NCTC 9343		1	1
No Yes	Dyadobacter fermentans DSM 18053		1	1
No Yes	Cytophaga hutchinsonii ATCC 33406		1	1
No Yes	Spirosoma linguale DSM 74		1	1
No Yes	Pedobacter heparinus DSM 2366		1	1
No Yes	Zunongwangia profunda SM-A87		1	1
No Yes	Flavobacterium psychrophilum JIP02/86		1	1
No Yes	Flavobacterium johnsoniae UW101		1	1
No Yes	Candidatus Protochlamydia amoebophila UWE25		3	3
No Yes	Opitutus terrae PB90-1		2	2
No Yes	Streptobacillus moniliformis DSM 12112		1	1
No Yes	Thermobaculum terrenum ATCC BAA-798		1	1
No Yes	Meiothermus ruber DSM 1279		1	1
No Yes	Pelotomaculum thermopropionicum SI		1	1
No Yes	Desulfotomaculum reducens MI-1		1	1
No Yes	Alkaliphilus oremlandii OhILAs		1	1
No Yes	Clostridium cellulolyticum H10		2	2
No Yes	Clostridium botulinum A ATCC 3502		1	1
No Yes	Thermoanaerobacter sp. X514		1	1
No Yes	Streptococcus agalactiae NEM316		1	1
No Yes	Bacillus pumilus SAFR-032		1	1
No Yes	Nautilia profundicola AmH		3	3
No Yes	Sulfurospirillum deleyianum DSM 6946		1	1
No Yes	Arcobacter butzleri RM4018		2	2
No Yes	Campylobacter hominis ATCC BAA-381		1	1
No Yes	Campylobacter lari RM2100		1	1
No Yes	Campylobacter curvus 525.92		2	2
No Yes	Campylobacter concisus 13826		3	3
No Yes	Campylobacter jejuni ssp. jejuni NCTC 11168		1	1
No Yes	Campylobacter fetus ssp. fetus 82-40		3	3
No Yes	Sulfurimonas denitrificans DSM 1251		2	2
No Yes	Wolinella succinogenes DSM 1740		5	5
No Yes	Helicobacter hepaticus ATCC 51449		1	1
No Yes	Helicobacter mustelae 12198		2	2
No Yes	Helicobacter acinonychis Sheeba		1	1
No Yes	Helicobacter pylori 26695		1	1
No Yes	Nitratiruptor sp. SB155-2		2	2
No Yes	Sulfurovum sp. NBC37-1		2	2
No Yes	Syntrophobacter fumaroxidans MPOB		1	1
No Yes	Desulfatibacillum alkenivorans AK-01		1	1
No Yes	Geobacter lovleyi SZ		1	1
No Yes	Haliangium ochraceum DSM 14365		11	11
No Yes	Sorangium cellulosum So ce 56		1	1
No Yes	Myxococcus xanthus DK 1622		1	1
No Yes	Magnetococcus sp. MC-1		2	2
No Yes	Thauera sp. MZ1T		1	1
No Yes	Candidatus Accumulibacter phosphatis clade IIA UW-1		2	2
No Yes	Methylibium petroleiphilum PM1		1	1
No Yes	Ralstonia eutropha JMP134		1	1
No Yes	Burkholderia thailandensis E264		1	1
No Yes	Burkholderia pseudomallei K96243		1	1
No Yes	Burkholderia mallei ATCC 23344		1	1
No Yes	Burkholderia ambifaria AMMD		1	1
No Yes	Burkholderia glumae BGR1		1	1
No Yes	Dinoroseobacter shibae DFL 12		1	1
No Yes	Ruegeria sp. TM1040		1	1
No Yes	Roseobacter denitrificans OCh 114		1	1
No Yes	Granulibacter bethesdensis CGDNIH1		1	1
No Yes	Gluconobacter oxydans 621H		1	1
No Yes	Acetobacter pasteurianus IFO 3283-01		1	1
No Yes	alpha proteobacterium IMCC1322		1	1
No Yes	Xanthobacter autotrophicus Py2		1	1
No Yes	Azorhizobium caulinodans ORS 571		1	1
No Yes	Methylobacterium chloromethanicum CM4		2	2
No Yes	Methylobacterium extorquens PA1		2	2
No Yes	Methylobacterium sp. 4-46		1	1
No Yes	Methylobacterium populi BJ001		1	1
No Yes	Methylobacterium nodulans ORS 2060		1	1
No Yes	Methylobacterium radiotolerans JCM 2831		1	1
No Yes	Mesorhizobium loti MAFF303099		1	1
No Yes	Methylocella silvestris BL2		1	1
No Yes	Beijerinckia indica ssp. indica ATCC 9039		1	1
No Yes	Oligotropha carboxidovorans OM5		1	1
No Yes	Nitrobacter winogradskyi Nb-255		1	1
No Yes	Nitrobacter hamburgensis X14		1	1
No Yes	Bradyrhizobium japonicum USDA 110		2	2
No Yes	Bartonella tribocorum CIP 105476		1	1
No Yes	Bartonella henselae Houston-1		1	1
No Yes	Bartonella grahamii as4aup		1	1
No Yes	Tolumonas auensis DSM 9187		1	1
No Yes	Aeromonas salmonicida ssp. salmonicida A449		2	2
No Yes	Aeromonas hydrophila ssp. hydrophila ATCC 7966		1	1
No Yes	Aliivibrio salmonicida LFI1238		1	1
No Yes	Vibrio fischeri ES114		1	1
No Yes	Vibrio splendidus LGP32		2	2
No Yes	Vibrio vulnificus YJ016 (Good annotation)		2	2
No Yes	Vibrio cholerae O1 biov. El Tor N16961		1	1
No Yes	Photobacterium profundum SS9		1	1
No Yes	Idiomarina loihiensis L2TR		2	2
No Yes	Shewanella loihica PV-4		2	2
No Yes	Shewanella sediminis HAW-EB3		1	1
No Yes	Shewanella denitrificans OS217		3	3
No Yes	Shewanella oneidensis MR-1		1	1
No Yes	Shewanella woodyi ATCC 51908		2	2
No Yes	Shewanella sp. MR-7		1	1
No Yes	Shewanella amazonensis SB2B		1	1
No Yes	Shewanella violacea DSS12		2	2
No Yes	Shewanella frigidimarina NCIMB 400		3	3
No Yes	Colwellia psychrerythraea 34H		2	2
No Yes	Pseudoalteromonas haloplanktis TAC125		1	1
No Yes	Teredinibacter turnerae T7901		1	1
No Yes	Saccharophagus degradans 2-40		1	1
No Yes	Alteromonas macleodii Deep ecotype		1	1
No Yes	Hahella chejuensis KCTC 2396		3	3
No Yes	Marinomonas sp. MWYL1		1	1
No Yes	Alkalilimnicola ehrlichii MLHE-1		1	1
No Yes	Halorhodospira halophila SL1		1	1
No Yes	Nitrosococcus halophilus Nc4		1	1
No Yes	Nitrosococcus oceani ATCC 19707		1	1
No Yes	Kangiella koreensis DSM 16069		1	1
No Yes	Sodalis glossinidius morsitans		1	1
No Yes	Photorhabdus asymbiotica		2	2
No Yes	Photorhabdus luminescens ssp. laumondii TTO1		2	2
No Yes	Xenorhabdus bovienii SS-2004		1	1
No Yes	Pseudomonas stutzeri A1501		1	1
No Yes	Pseudomonas fluorescens Pf-5		2	2
No Yes	Cellvibrio japonicus Ueda107		1	1
No Yes	Thiomicrospira crunogena XCL-2		1	1
No Yes	Gloeobacter violaceus PCC 7421		5	5
No Yes	Acaryochloris marina MBIC11017		10	10
No Yes	Nostoc punctiforme PCC 73102		15	15
No Yes	Nostoc sp. PCC 7120		13	13
No Yes	Anabaena variabilis ATCC 29413		12	12
No Yes	Trichodesmium erythraeum IMS101		14	14
No Yes	Thermosynechococcus elongatus BP-1		2	2
No Yes	Cyanothece sp. ATCC 51142		12	11
No Yes	Synechocystis sp. PCC 6803		4	4
No Yes	Microcystis aeruginosa NIES-843		8	8
No Yes	Methanocella paludicola SANAE		1	1
No Yes	Methanosarcina acetivorans C2A		2	1
No Yes	Methanosarcina barkeri Fusaro		1	1
No Yes	Methanocaldococcus jannaschii DSM 2661		1	1
No Yes	Methanobrevibacter ruminantium M1		1	1
No Yes	Thermoproteus neutrophilus V24Sta		1	1
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	273	273
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	185	185
No Yes	Cryptococcus neoformans var. grubii H99		106	106
No Yes	Cryptococcus neoformans B-3501A		104	104
No Yes	Ajellomyces dermatitidis ER-3		116	116
No Yes	Histoplasma capsulatum H143		109	109
No Yes	Histoplasma capsulatum H88		115	115
No Yes	Histoplasma capsulatum G186AR		119	119
No Yes	Paracoccidioides brasiliensis Pb01		114	114
No Yes	Paracoccidioides brasiliensis Pb03		111	111
No Yes	Coccidioides posadasii str. Silveira		112	112
No Yes	Coccidioides immitis RMSCC 3703		107	107
No Yes	Coccidioides immitis RMSCC 2394		115	115
No Yes	Coccidioides immitis H538.4		108	108
No Yes	Aspergillus fumigatus A1163		117	116
No Yes	Candida albicans WO-1		103	103
No Yes	Saccharomyces cerevisiae YJM789		107	107
No Yes	Saccharomyces cerevisiae RM11-1a		105	105
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	108	108
No Yes	Schizosaccharomyces pombe 972h-		124	123
No Yes	Batrachochytrium dendrobatidis JAM81		173	172
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	228	227
No Yes	Plasmodium falciparum HB3		94	94
No Yes	Plasmodium falciparum Dd2		76	75
No Yes	Leptospira interrogans ser. Copenhageni Fiocruz L1-130		1	1
No Yes	Borrelia burgdorferi ZS7		1	1
No Yes	Frankia sp. EAN1pec		16	15
No Yes	Chlorobium phaeobacteroides BS1		1	1
No Yes	Bacteroides fragilis YCH46		2	2
No Yes	Clostridium botulinum F Langeland		1	1
No Yes	Clostridium botulinum B1 Okra		1	1
No Yes	Clostridium botulinum Ba4 657		1	1
No Yes	Clostridium botulinum A2 Kyoto		1	1
No Yes	Clostridium botulinum A Hall		1	1
No Yes	Clostridium botulinum A ATCC 19397		1	1
No Yes	Streptococcus agalactiae A909		1	1
No Yes	Streptococcus agalactiae 2603V/R		1	1
No Yes	Campylobacter jejuni RM1221		1	1
No Yes	Campylobacter jejuni ssp. jejuni 81116		2	2
No Yes	Campylobacter jejuni ssp. jejuni 81-176		1	1
No Yes	Helicobacter pylori B38		2	2
No Yes	Helicobacter pylori P12		1	1
No Yes	Helicobacter pylori G27		2	2
No Yes	Helicobacter pylori HPAG1		1	1
No Yes	Azoarcus sp. BH72		1	1
No Yes	Burkholderia pseudomallei 1106a		1	1
No Yes	Burkholderia pseudomallei 668		1	1
No Yes	Burkholderia pseudomallei 1710b		1	1
No Yes	Burkholderia mallei NCTC 10229		1	1
No Yes	Burkholderia mallei NCTC 10247		1	1
No Yes	Burkholderia mallei SAVP1		1	1
No Yes	Gluconacetobacter diazotrophicus PAl 5		1	1
No Yes	Methylobacterium extorquens DM4		2	2
No Yes	Methylobacterium extorquens AM1		2	2
No Yes	Rhodopseudomonas palustris TIE-1		1	1
No Yes	Vibrio fischeri MJ11		2	2
No Yes	Vibrio vulnificus CMCP6 (Poor annotation)		1	1
No Yes	Vibrio cholerae M66-2		1	1
No Yes	Vibrio cholerae O395		2	2
No Yes	Vibrio cholerae MJ-1236		1	1
No Yes	Shewanella sp. ANA-3		1	1
No Yes	Shewanella baltica OS223		1	1
No Yes	Shewanella sp. MR-4		1	1
No Yes	Thioalkalivibrio sp. K90mix		1	1
No Yes	Pseudomonas aeruginosa UCBPP-PA14		1	1
No Yes	Prochlorococcus marinus NATL1A		1	1
No Yes	Prochlorococcus marinus MIT 9301		1	1
No Yes	Prochlorococcus marinus MIT 9515		1	1
No Yes	Prochlorococcus marinus AS9601		1	1
No Yes	Prochlorococcus marinus ssp. marinus CCMP1375		1	1
No Yes	Prochlorococcus marinus ssp. pastoris CCMP1986		1	1
No Yes	Prochlorococcus marinus MIT 9215		1	1
No Yes	Prochlorococcus marinus MIT 9211		1	1
No Yes	Prochlorococcus marinus MIT 9312		1	1
No Yes	Prochlorococcus marinus MIT 9303		1	1
No Yes	Prochlorococcus marinus NATL2A		1	1
No Yes	Cyanothece sp. PCC 8802		8	8
No Yes	Cyanothece sp. PCC 7425		3	3
No Yes	Cyanothece sp. PCC 7424		12	11
No Yes	Cyanothece sp. PCC 8801		8	8
No Yes	Synechococcus sp. JA-2-3Ba(2-13) (Poor annotation)		1	1
No Yes	Synechococcus sp. JA-3-3Ab (Poor annotation)		1	1
No Yes	Synechococcus sp. WH 8102 (Good annotation)		1	1
No Yes	Synechococcus sp. PCC 7002		3	3
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	251	250
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		80	80
No Yes	Lotus japonicus (Early assembly)		27	27
No Yes	Prunus persica (Early draft)	Peach	251	251
No Yes	Manihot esculenta (Early draft)	Cassava	354	350
No Yes	Ricinus communis (Early assembly)	Castor bean	210	209
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	264	263
No Yes	Phoenix dactylifera (Early draft)	Date palm	212	212
No Yes	Trypanosoma vivax (Parial)		148	147
No Yes	Trypanosoma congolense (Partial)		150	150
No Yes	Toxoplasma gondii GT1 (Early assembly)		103	103
No Yes	Toxoplasma gondii VEG (Early assembly)		102	102
No Yes	Toxoplasma gondii RH (Archived)		96	96
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	257	257
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	252	251
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	226	222
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	239	239
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	260	258
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	259	257
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	222	220
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	223	221
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	184	182
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	250	248
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	260	258
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	200	200
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	234	233
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	260	256
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	206	205
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	223	223
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	208	208
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	198	198
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	252	249
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	164	163
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	247	244
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	256	254
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	214	214
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	244	244
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	213	211
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	238	236
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	181	181
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	210	208
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	239	236
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	214	214
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	220	219
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	195	194
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	239	238
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	263	261
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	223	222
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	245	243
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	235	233
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	217	216
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	217	214
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	228	228
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	223	222
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	268	266
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	255	253
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	298	297
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	269	266
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		155	154
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		209	208
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	151	151
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	273	273
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	176	176
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	192	192
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	172	171
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	144	144
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	143	143
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	230	230
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	324	322
No Yes	NCBI viral sequences (Viral)		16	16
No Yes	PDB chains (SCOP 1.73) (PDB)		17	17
No Yes	TargetDB (Targets)		1073	1071
No Yes	UniProt 15.0 (UniProt)		21880	21776
No Yes	UniProt 15.0 viral sequences (Viral)		16	16