(Trans)glycosidases superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		82428	82428
No Yes	Homo sapiens 49_36k (all transcripts)	Human	124	119
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	94	90
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	52	48
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	60	55
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	101	95
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	111	104
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	47	42
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	49	45
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	50	46
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	94	86
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	84	78
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	49	43
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	56	51
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	55	49
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	52	44
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	51	46
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	54	47
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	55	52
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	77	72
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	44	39
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	52	47
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	76	69
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	40	37
No Yes	Equus caballus 49_2 (all transcripts)	Horse	66	59
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	48	43
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	51	46
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	46	41
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	43	39
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	52	48
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	45	40
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	53	48
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	50	45
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	48	43
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	112	90
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	86	81
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	65	59
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	58	53
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	52	48
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	61	55
No Yes	Xenopus laevis	African clawed frog	70	70
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	88	84
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	88	82
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	104	96
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	73	68
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	70	61
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	139	128
No Yes	Branchiostoma floridae 1.0	Florida lancelet	201	183
No Yes	Ciona savignyi 49_2f (all transcripts)		138	124
No Yes	Ciona intestinalis 49_2i (all transcripts)		85	84
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	193	189
No Yes	Helobdella robusta		47	46
No Yes	Capitella sp. I		154	154
No Yes	Bombyx mori	Domestic silkworm	108	101
No Yes	Nasonia vitripennis	Jewel wasp	54	53
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	133	120
No Yes	Drosophila grimshawi 1.3		61	59
No Yes	Drosophila willistoni 1.3		66	61
No Yes	Drosophila pseudoobscura 2.3		66	62
No Yes	Drosophila persimilis 1.3		63	61
No Yes	Drosophila yakuba 1.3		61	55
No Yes	Drosophila simulans 1.3		56	53
No Yes	Drosophila sechellia 1.3		63	60
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	80	76
No Yes	Drosophila erecta 1.3		59	55
No Yes	Drosophila ananassae 1.3		66	62
No Yes	Drosophila virilis 1.2		59	57
No Yes	Drosophila mojavensis 1.3		60	56
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	103	96
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	112	104
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	85	76
No Yes	Tribolium castaneum 3.0	Red flour beetle	106	92
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	45	40
No Yes	Acyrthosiphon pisum	Pea aphid	81	76
No Yes	Daphnia pulex	Common water flea	104	100
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	119	117
No Yes	Lottia gigantea		186	171
No Yes	Pristionchus pacificus		84	83
No Yes	Meloidogyne incognita	Southern root-knot nematode	91	89
No Yes	Meloidogyne hapla		58	56
No Yes	Brugia malayi	Agent of lymphatic filariasis	12	12
No Yes	Caenorhabditis japonica		47	46
No Yes	Caenorhabditis brenneri		58	53
No Yes	Caenorhabditis remanei		95	90
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	100	94
No Yes	Caenorhabditis briggsae 2		72	68
No Yes	Schistosoma mansoni		41	39
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	83	82
No Yes	Hydra magnipapillata		86	83
No Yes	Trichoplax adhaerens		42	42
No Yes	Proterospongia sp. ATCC 50818		75	75
No Yes	Monosiga brevicollis		112	112
No Yes	Capsaspora owczarzaki ATCC 30864		31	31
No Yes	Malassezia globosa CBS 7966		11	11
No Yes	Ustilago maydis		50	50
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		98	98
No Yes	Melampsora laricis-populina		95	95
No Yes	Sporobolomyces roseus IAM 13481		32	32
No Yes	Serpula lacrymans var. lacrymans S7.9		87	87
No Yes	Coprinopsis cinerea okayama7 130		85	85
No Yes	Pleurotus ostreatus	Oyster mushroom	111	111
No Yes	Laccaria bicolor S238N-H82		87	87
No Yes	Agaricus bisporus var. bisporus		93	93
No Yes	Schizophyllum commune		105	105
No Yes	Heterobasidion annosum		92	92
No Yes	Phanerochaete chrysosporium RP-78 2.1		95	95
No Yes	Postia placenta		131	131
No Yes	Tremella mesenterica		48	48
No Yes	Cryptococcus neoformans JEC21		39	39
No Yes	Magnaporthe grisea 70-15		117	117
No Yes	Podospora anserina		102	102
No Yes	Sporotrichum thermophile ATCC 42464		82	82
No Yes	Thielavia terrestris NRRL 8126		93	93
No Yes	Chaetomium globosum CBS 148.51		100	100
No Yes	Neurospora tetrasperma		80	80
No Yes	Neurospora discreta FGSC 8579		77	77
No Yes	Neurospora crassa OR74A		81	81
No Yes	Cryphonectria parasitica	Chestnut blight fungus	125	125
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		177	177
No Yes	Nectria haematococca mpVI		160	160
No Yes	Fusarium verticillioides 7600		152	152
No Yes	Fusarium graminearum		123	123
No Yes	Trichoderma atroviride		129	129
No Yes	Trichoderma reesei 1.2		101	101
No Yes	Trichoderma virens Gv29-8		143	143
No Yes	Verticillium dahliae VdLs.17		118	118
No Yes	Verticillium albo-atrum VaMs.102		123	123
No Yes	Botrytis cinerea B05.10		104	104
No Yes	Sclerotinia sclerotiorum		99	99
No Yes	Alternaria brassicicola		116	116
No Yes	Pyrenophora tritici-repentis		107	107
No Yes	Cochliobolus heterostrophus		126	125
No Yes	Stagonospora nodorum		135	135
No Yes	Mycosphaerella fijiensis CIRAD86		107	107
No Yes	Mycosphaerella graminicola IPO323		104	104
No Yes	Ajellomyces dermatitidis SLH14081		43	43
No Yes	Histoplasma capsulatum class NAmI strain WU24		41	41
No Yes	Microsporum gypseum		46	46
No Yes	Arthroderma benhamiae CBS 112371		45	45
No Yes	Microsporum canis CBS 113480		49	49
No Yes	Trichophyton equinum CBS 127.97		42	42
No Yes	Trichophyton verrucosum HKI 0517		44	44
No Yes	Trichophyton tonsurans CBS 112818		41	41
No Yes	Trichophyton rubrum CBS 118892		43	43
No Yes	Paracoccidioides brasiliensis Pb18		35	35
No Yes	Coccidioides posadasii RMSCC 3488		36	36
No Yes	Coccidioides immitis RS		35	35
No Yes	Uncinocarpus reesii 1704		42	42
No Yes	Aspergillus fumigatus Af293		127	127
No Yes	Neosartorya fischeri NRRL 181		140	140
No Yes	Penicillium chrysogenum Wisconsin 54-1255		114	114
No Yes	Penicillium marneffei ATCC 18224		117	116
No Yes	Aspergillus carbonarius ITEM 5010		107	107
No Yes	Aspergillus terreus NIH2624		149	149
No Yes	Aspergillus oryzae RIB40		138	138
No Yes	Aspergillus niger ATCC 1015		83	83
No Yes	Aspergillus flavus NRRL3357		145	145
No Yes	Aspergillus clavatus NRRL 1		101	101
No Yes	Aspergillus nidulans FGSC A4		135	135
No Yes	Tuber melanosporum Vittad	Perigord truffle	48	48
No Yes	Candida dubliniensis CD36		30	30
No Yes	Candida tropicalis MYA-3404		34	34
No Yes	Candida parapsilosis		31	31
No Yes	Candida albicans SC5314		32	32
No Yes	Yarrowia lipolytica CLIB122		26	26
No Yes	Candida lusitaniae ATCC 42720		29	29
No Yes	Vanderwaltozyma polyspora DSM 70294		29	29
No Yes	Candida glabrata CBS138		21	21
No Yes	Kluyveromyces thermotolerans CBS 6340		21	21
No Yes	Lachancea kluyveri		29	29
No Yes	Kluyveromyces waltii		16	16
No Yes	Lodderomyces elongisporus NRRL YB-4239		21	21
No Yes	Ashbya gossypii ATCC 10895		16	16
No Yes	Debaromyces hansenii		37	37
No Yes	Zygosaccharomyces rouxii		18	18
No Yes	Saccharomyces mikatae MIT		42	42
No Yes	Saccharomyces paradoxus MIT		34	34
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	26	26
No Yes	Saccharomyces bayanus MIT		32	32
No Yes	Candida guilliermondii ATCC 6260		100	100
No Yes	Pichia stipitis CBS 6054		44	44
No Yes	Pichia pastoris GS115		16	16
No Yes	Kluyveromyces lactis		24	24
No Yes	Schizosaccharomyces octosporus yFS286		27	27
No Yes	Schizosaccharomyces japonicus yFS275		25	25
No Yes	Schizosaccharomyces pombe	Fission yeast	28	28
No Yes	Allomyces macrogynus ATCC 38327		50	49
No Yes	Rhizopus oryzae RA 99-880		51	51
No Yes	Phycomyces blakesleeanus		39	39
No Yes	Mucor circinelloides		51	51
No Yes	Spizellomyces punctatus DAOM BR117		43	41
No Yes	Batrachochytrium dendrobatidis JEL423		22	22
No Yes	Dictyostelium discoideum		51	51
No Yes	Dictyostelium purpureum		57	57
No Yes	Entamoeba dispar		44	44
No Yes	Entamoeba invadens		70	69
No Yes	Entamoeba histolytica 1		45	45
No Yes	Arabidopsis lyrata	Lyrate rockcress	235	235
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	264	264
No Yes	Carica papaya	Papaya	201	201
No Yes	Medicago truncatula	Barrel medic	237	237
No Yes	Glycine max	Soybean	426	424
No Yes	Cucumis sativus	Cucumber	324	324
No Yes	Populus trichocarpa 1.1	Black cottonwood	358	358
No Yes	Vitis vinifera	Wine grape	280	279
No Yes	Brachypodium distachyon		271	271
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	417	414
No Yes	Zea mays subsp. mays	Maize	442	442
No Yes	Sorghum bicolor	Sorghum	267	253
No Yes	Selaginella moellendorffii		306	305
No Yes	Physcomitrella patens subsp. patens		159	159
No Yes	Coccomyxa sp. C-169		92	91
No Yes	Chlorella sp. NC64A		72	72
No Yes	Chlorella vulgaris		95	95
No Yes	Volvox carteri f. nagariensis		41	41
No Yes	Chlamydomonas reinhardtii 4.0		43	42
No Yes	Ostreococcus sp. RCC809		27	27
No Yes	Ostreococcus lucimarinus CCE9901		27	27
No Yes	Ostreococcus tauri		26	26
No Yes	Micromonas sp. RCC299		32	32
No Yes	Micromonas pusilla CCMP1545		31	31
No Yes	Cyanidioschyzon merolae		17	17
No Yes	Giardia lamblia		5	5
No Yes	Trypanosoma cruzi strain CL Brener		4	4
No Yes	Trypanosoma brucei		2	2
No Yes	Leishmania mexicana		3	3
No Yes	Leishmania major strain Friedlin		3	3
No Yes	Leishmania infantum JPCM5		3	3
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		3	3
No Yes	Aureococcus anophagefferens		55	55
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	160	157
No Yes	Phytophthora sojae 1.1		172	171
No Yes	Phytophthora infestans T30-4		136	136
No Yes	Phytophthora capsici		158	158
No Yes	Phaeodactylum tricornutum		27	26
No Yes	Fragilariopsis cylindrus		62	60
No Yes	Thalassiosira pseudonana		37	37
No Yes	Paramecium tetraurelia		45	45
No Yes	Tetrahymena thermophila SB210 1		72	67
No Yes	Plasmodium falciparum 3D7		2	2
No Yes	Plasmodium vivax SaI-1		3	2
No Yes	Plasmodium knowlesi strain H		2	2
No Yes	Plasmodium yoelii ssp. yoelii 1		4	4
No Yes	Plasmodium chabaudi		3	3
No Yes	Plasmodium berghei ANKA		3	3
No Yes	Cryptosporidium hominis		5	5
No Yes	Cryptosporidium muris		6	6
No Yes	Cryptosporidium parvum Iowa II		7	7
No Yes	Neospora caninum Nc-Liverpool		12	12
No Yes	Neospora caninum		14	14
No Yes	Toxoplasma gondii ME49		11	11
No Yes	Naegleria gruberi		37	37
No Yes	Trichomonas vaginalis		102	100
No Yes	Emiliania huxleyi CCMP1516		205	205
No Yes	Onion yellows phytoplasma OY-M		1	1
No Yes	Acholeplasma laidlawii PG-8A		20	19
No Yes	Mesoplasma florum L1		12	12
No Yes	Mycoplasma mycoides ssp. mycoides SC PG1		4	4
No Yes	Mycoplasma capricolum ssp. capricolum ATCC 27343		2	2
No Yes	Mycoplasma crocodyli MP145		6	6
No Yes	Mycoplasma penetrans HF-2		3	3
No Yes	Mycoplasma mobile 163K		5	5
No Yes	Mycoplasma arthritidis 158L3-1		1	1
No Yes	Mycoplasma synoviae 53		1	1
No Yes	Mycoplasma pulmonis UAB CTIP		5	5
No Yes	Mycoplasma hyopneumoniae 232		1	1
No Yes	Mycoplasma hominis		1	1
No Yes	Aminobacterium colombiense DSM 12261		2	2
No Yes	Thermanaerovibrio acidaminovorans DSM 6589		5	5
No Yes	Brachyspira hyodysenteriae WA1		11	11
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis L550		7	7
No Yes	Leptospira interrogans ser. Lai 56601		10	10
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Paris)		13	13
No Yes	Treponema pallidum ssp. pallidum Nichols		2	1
No Yes	Treponema denticola ATCC 35405		14	14
No Yes	Borrelia garinii PBi		4	4
No Yes	Borrelia afzelii PKo		4	4
No Yes	Borrelia burgdorferi B31		4	4
No Yes	Borrelia recurrentis A1		3	3
No Yes	Borrelia duttonii Ly		4	4
No Yes	Borrelia turicatae 91E135		4	4
No Yes	Borrelia hermsii DAH		4	4
No Yes	Rhodopirellula baltica SH 1		24	24
No Yes	Pirellula staleyi DSM 6068		9	9
No Yes	Gardnerella vaginalis 409-05		15	14
No Yes	Bifidobacterium longum NCC2705		29	29
No Yes	Bifidobacterium animalis ssp. lactis AD011		30	30
No Yes	Bifidobacterium dentium Bd1		65	63
No Yes	Bifidobacterium adolescentis ATCC 15703		42	41
No Yes	Kineococcus radiotolerans SRS30216		47	47
No Yes	Catenulispora acidiphila DSM 44928		152	152
No Yes	Stackebrandtia nassauensis DSM 44728		51	51
No Yes	Acidothermus cellulolyticus 11B		22	22
No Yes	Nakamurella multipartita DSM 44233		36	36
No Yes	Geodermatophilus obscurus DSM 43160		20	20
No Yes	Frankia sp. CcI3		19	19
No Yes	Frankia alni ACN14a		26	26
No Yes	Thermobifida fusca YX		22	22
No Yes	Thermomonospora curvata DSM 43183		20	20
No Yes	Streptosporangium roseum DSM 43021		78	77
No Yes	Streptomyces griseus ssp. griseus NBRC 13350		51	50
No Yes	Streptomyces avermitilis MA-4680		81	80
No Yes	Streptomyces scabiei 87.22		100	99
No Yes	Streptomyces coelicolor A3(2)		87	86
No Yes	Actinosynnema mirum DSM 43827		78	77
No Yes	Saccharomonospora viridis DSM 43017		13	13
No Yes	Saccharopolyspora erythraea NRRL 2338		48	48
No Yes	Kribbella flavida DSM 17836		89	88
No Yes	Nocardioides sp. JS614		26	26
No Yes	Propionibacterium acnes KPA171202		29	28
No Yes	Salinispora arenicola CNS-205		15	15
No Yes	Salinispora tropica CNB-440		21	21
No Yes	Gordonia bronchialis DSM 43247		15	15
No Yes	Rhodococcus jostii RHA1		18	18
No Yes	Rhodococcus opacus B4		20	20
No Yes	Rhodococcus erythropolis PR4		20	20
No Yes	Nocardia farcinica IFM 10152		14	14
No Yes	Mycobacterium abscessus		9	9
No Yes	Mycobacterium sp. MCS		18	18
No Yes	Mycobacterium avium ssp. paratuberculosis K-10		17	17
No Yes	Mycobacterium vanbaalenii PYR-1		16	15
No Yes	Mycobacterium tuberculosis H37Rv		14	14
No Yes	Mycobacterium bovis AF2122/97		14	14
No Yes	Mycobacterium ulcerans Agy99		14	14
No Yes	Mycobacterium gilvum PYR-GCK		17	16
No Yes	Mycobacterium marinum M		19	19
No Yes	Mycobacterium smegmatis MC2 155		17	17
No Yes	Mycobacterium leprae TN		2	2
No Yes	Corynebacterium aurimucosum		9	9
No Yes	Corynebacterium kroppenstedtii DSM 44385		12	12
No Yes	Corynebacterium efficiens YS-314		13	13
No Yes	Corynebacterium urealyticum DSM 7109		3	3
No Yes	Corynebacterium jeikeium K411		9	9
No Yes	Corynebacterium glutamicum ATCC 13032 Kitasato		12	12
No Yes	Corynebacterium diphtheriae NCTC 13129		13	12
No Yes	Sanguibacter keddieii DSM 10542		67	66
No Yes	Kytococcus sedentarius DSM 20547		7	7
No Yes	Beutenbergia cavernae DSM 12333		57	57
No Yes	Leifsonia xyli ssp. xyli CTCB07		16	16
No Yes	Clavibacter michiganensis ssp. michiganensis NCPPB 382		45	45
No Yes	Jonesia denitrificans DSM 20603		43	43
No Yes	Brachybacterium faecium DSM 4810		52	52
No Yes	Xylanimonas cellulosilytica DSM 15894		47	46
No Yes	Kocuria rhizophila DC2201		11	11
No Yes	Rothia mucilaginosa DY-18		5	5
No Yes	Arthrobacter sp. FB24		36	36
No Yes	Arthrobacter chlorophenolicus A6		46	46
No Yes	Arthrobacter aurescens TC1		38	38
No Yes	Renibacterium salmoninarum ATCC 33209		26	26
No Yes	Micrococcus luteus NCTC 2665		7	7
No Yes	Cryptobacterium curtum DSM 15641		2	2
No Yes	Eggerthella lenta DSM 2243		2	2
No Yes	Slackia heliotrinireducens DSM 20476		11	11
No Yes	Atopobium parvulum DSM 20469		11	10
No Yes	Conexibacter woesei DSM 14684		35	35
No Yes	Rubrobacter xylanophilus DSM 9941		15	15
No Yes	Acidimicrobium ferrooxidans DSM 10331		9	8
No Yes	Denitrovibrio acetiphilus DSM 12809		1	1
No Yes	Deferribacter desulfuricans SSM1		1	1
No Yes	Kosmotoga olearia TBF 19.5.1		22	22
No Yes	Petrotoga mobilis SJ95		22	22
No Yes	Fervidobacterium nodosum Rt17-B1		18	18
No Yes	Thermosipho melanesiensis BI429		12	12
No Yes	Thermosipho africanus TCF52B		15	15
No Yes	Thermotoga lettingae TMO		26	26
No Yes	Thermotoga sp. RQ2		30	30
No Yes	Thermotoga naphthophila RKU-10		23	23
No Yes	Thermotoga petrophila RKU-1		29	29
No Yes	Thermotoga neapolitana DSM 4359		33	33
No Yes	Thermotoga maritima MSB8		27	27
No Yes	Dehalococcoides ethenogenes 195		1	1
No Yes	Thermomicrobium roseum DSM 5159		12	12
No Yes	Sphaerobacter thermophilus DSM 20745		18	18
No Yes	Herpetosiphon aurantiacus ATCC 23779		53	53
No Yes	Roseiflexus sp. RS-1		44	44
No Yes	Roseiflexus castenholzii DSM 13941		46	46
No Yes	Chloroflexus sp. Y-400-fl		45	44
No Yes	Chloroflexus aggregans DSM 9485		41	40
No Yes	Chloroflexus aurantiacus J-10-fl		46	45
No Yes	Sulfurihydrogenibium sp. YO3AOP1		1	1
No Yes	Sulfurihydrogenibium azorense Az-Fu1		1	1
No Yes	Persephonella marina EX-H1		1	1
No Yes	Hydrogenobaculum sp. Y04AAS1		1	1
No Yes	Thermocrinis albus DSM 14484		2	2
No Yes	Aquifex aeolicus VF5		3	3
No Yes	Hydrogenobacter thermophilus TK-6		2	2
No Yes	Gemmatimonas aurantiaca T-27		10	10
No Yes	Fibrobacter succinogenes ssp. succinogenes S85		49	48
No Yes	Candidatus Koribacter versatilis Ellin345		57	56
No Yes	Candidatus Solibacter usitatus Ellin6076		82	81
No Yes	Acidobacterium capsulatum ATCC 51196		59	59
No Yes	Elusimicrobium minutum Pei191		4	4
No Yes	Pelodictyon phaeoclathratiforme BU-1		8	8
No Yes	Pelodictyon luteolum DSM 273		7	7
No Yes	Chlorobium chlorochromatii CaD3		8	8
No Yes	Chlorobium phaeobacteroides DSM 266		8	8
No Yes	Chlorobium phaeovibrioides DSM 265		7	7
No Yes	Chlorobium limicola DSM 245		9	9
No Yes	Chlorobaculum parvum NCIB 8327		7	7
No Yes	Chlorobium tepidum TLS		8	8
No Yes	Chloroherpeton thalassium ATCC 35110		10	10
No Yes	Prosthecochloris aestuarii DSM 271		8	8
No Yes	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2		4	4
No Yes	Prevotella ruminicola 23		77	77
No Yes	Parabacteroides distasonis ATCC 8503		53	53
No Yes	Porphyromonas gingivalis W83		13	13
No Yes	Bacteroides vulgatus ATCC 8482		90	90
No Yes	Bacteroides thetaiotaomicron VPI-5482		136	136
No Yes	Bacteroides fragilis NCTC 9343		85	85
No Yes	Candidatus Amoebophilus asiaticus 5a2		1	1
No Yes	Salinibacter ruber DSM 13855		17	17
No Yes	Rhodothermus marinus DSM 4252		33	33
No Yes	Chitinophaga pinensis DSM 2588		101	98
No Yes	Dyadobacter fermentans DSM 18053		56	54
No Yes	Cytophaga hutchinsonii ATCC 33406		23	23
No Yes	Spirosoma linguale DSM 74		79	78
No Yes	Pedobacter heparinus DSM 2366		61	61
No Yes	Zunongwangia profunda SM-A87		70	70
No Yes	Gramella forsetii KT0803		22	22
No Yes	Robiginitalea biformata HTCC2501		17	17
No Yes	Flavobacteriaceae bacterium 3519-10		17	17
No Yes	Capnocytophaga ochracea DSM 7271		30	30
No Yes	Flavobacterium psychrophilum JIP02/86		4	4
No Yes	Flavobacterium johnsoniae UW101		85	84
No Yes	Dictyoglomus turgidum DSM 6724		38	38
No Yes	Dictyoglomus thermophilum H-6-12		35	35
No Yes	Candidatus Protochlamydia amoebophila UWE25		5	5
No Yes	Chlamydophila pneumoniae TW-183		3	3
No Yes	Chlamydophila caviae GPIC		3	3
No Yes	Chlamydophila felis Fe/C-56		3	3
No Yes	Chlamydophila abortus S26/3		3	3
No Yes	Chlamydia muridarum Nigg		3	3
No Yes	Chlamydia trachomatis D/UW-3/CX		3	3
No Yes	Coraliomargarita akajimensis DSM 45221		42	42
No Yes	Opitutus terrae PB90-1		94	94
No Yes	Methylacidiphilum infernorum V4		13	13
No Yes	Akkermansia muciniphila ATCC BAA-835		38	38
No Yes	Thermodesulfovibrio yellowstonii DSM 11347		4	4
No Yes	Streptobacillus moniliformis DSM 12112		14	14
No Yes	Sebaldella termitidis ATCC 33386		26	26
No Yes	Leptotrichia buccalis DSM 1135		13	13
No Yes	Fusobacterium nucleatum ssp. nucleatum ATCC 25586		7	7
No Yes	Thermobaculum terrenum ATCC BAA-798		45	45
No Yes	Deinococcus deserti VCD115		21	21
No Yes	Deinococcus geothermalis DSM 11300		18	18
No Yes	Deinococcus radiodurans R1		21	21
No Yes	Meiothermus ruber DSM 1279		19	19
No Yes	Thermus thermophilus HB27 (First sequenced)		4	4
No Yes	Natranaerobius thermophilus JW/NM-WN-LF		7	6
No Yes	Symbiobacterium thermophilum IAM 14863		11	11
No Yes	Anaerococcus prevotii DSM 20548		21	21
No Yes	Finegoldia magna ATCC 29328		5	5
No Yes	Clostridiales genomosp. BVAB3 UPII9-5		12	11
No Yes	Anaerocellum thermophilum DSM 6725		34	32
No Yes	Candidatus Desulforudis audaxviator MP104C		5	5
No Yes	Pelotomaculum thermopropionicum SI		5	5
No Yes	Desulfitobacterium hafniense Y51		8	7
No Yes	Desulfotomaculum reducens MI-1		5	5
No Yes	Desulfotomaculum acetoxidans DSM 771		3	3
No Yes	Eubacterium rectale ATCC 33656		40	40
No Yes	Eubacterium eligens ATCC 27750		12	12
No Yes	Syntrophomonas wolfei ssp. wolfei Goettingen		5	5
No Yes	Heliobacterium modesticaldum Ice1		6	6
No Yes	Alkaliphilus oremlandii OhILAs		7	7
No Yes	Alkaliphilus metalliredigens QYMF		10	10
No Yes	Clostridium phytofermentans ISDg		64	63
No Yes	Clostridium novyi NT		5	5
No Yes	Clostridium kluyveri DSM 555		7	7
No Yes	Clostridium cellulolyticum H10		47	47
No Yes	Clostridium beijerinckii NCIMB 8052		55	55
No Yes	Clostridium thermocellum ATCC 27405		38	37
No Yes	Clostridium tetani E88		4	4
No Yes	Clostridium perfringens 13		37	37
No Yes	Clostridium difficile 630		22	22
No Yes	Clostridium botulinum A ATCC 3502		15	15
No Yes	Clostridium acetobutylicum ATCC 824		37	37
No Yes	Veillonella parvula DSM 2008		3	3
No Yes	Acidaminococcus fermentans DSM 20731		6	5
No Yes	Caldicellulosiruptor saccharolyticus DSM 8903		39	37
No Yes	Coprothermobacter proteolyticus DSM 5265		3	3
No Yes	Moorella thermoacetica ATCC 39073		7	7
No Yes	Ammonifex degensii KC4		1	1
No Yes	Thermoanaerobacter pseudethanolicus ATCC 33223		14	14
No Yes	Thermoanaerobacter sp. X514		12	12
No Yes	Thermoanaerobacter tengcongensis MB4		18	18
No Yes	Thermoanaerobacter italicus Ab9		20	20
No Yes	Halothermothrix orenii H 168		30	30
No Yes	Enterococcus faecalis V583		30	29
No Yes	Oenococcus oeni PSU-1		17	16
No Yes	Leuconostoc citreum KM20		25	20
No Yes	Leuconostoc mesenteroides ssp. mesenteroides ATCC 8293		27	23
No Yes	Lactobacillus casei ATCC 334		27	27
No Yes	Lactobacillus crispatus ST1		31	31
No Yes	Lactobacillus rhamnosus GG		37	37
No Yes	Lactobacillus johnsonii NCC 533		28	28
No Yes	Lactobacillus salivarius UCC118		13	13
No Yes	Lactobacillus fermentum IFO 3956		6	6
No Yes	Lactobacillus sakei ssp. sakei 23K		9	9
No Yes	Lactobacillus reuteri DSM 20016		11	10
No Yes	Lactobacillus gasseri ATCC 33323		24	24
No Yes	Lactobacillus plantarum WCFS1		39	39
No Yes	Lactobacillus helveticus DPC 4571		10	10
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842		7	7
No Yes	Lactobacillus brevis ATCC 367		16	16
No Yes	Lactobacillus acidophilus NCFM		34	34
No Yes	Pediococcus pentosaceus ATCC 25745		15	15
No Yes	Lactococcus lactis ssp. lactis Il1403		24	24
No Yes	Streptococcus gallolyticus UCN34		38	35
No Yes	Streptococcus equi ssp. zooepidemicus MGCS10565		20	20
No Yes	Streptococcus dysgalactiae ssp. equisimilis GGS_124		26	26
No Yes	Streptococcus mitis B6		18	17
No Yes	Streptococcus uberis 0140J		25	25
No Yes	Streptococcus pyogenes M1 GAS		16	16
No Yes	Streptococcus pneumoniae TIGR4 (Virulent)		24	23
No Yes	Streptococcus agalactiae NEM316		13	13
No Yes	Streptococcus mutans UA159		22	19
No Yes	Streptococcus thermophilus LMG 18311 (Older strain)		15	15
No Yes	Streptococcus suis 05ZYH33		29	29
No Yes	Streptococcus sanguinis SK36		23	22
No Yes	Streptococcus gordonii Challis subCH1		25	23
No Yes	Exiguobacterium sp. AT1b		28	28
No Yes	Exiguobacterium sibiricum 255-15		23	23
No Yes	Bacillus tusciae DSM 2912		4	4
No Yes	Alicyclobacillus acidocaldarius ssp. acidocaldarius DSM 446		19	19
No Yes	Brevibacillus brevis NBRC 100599		14	14
No Yes	Paenibacillus sp. JDR-2		122	122
No Yes	Listeria welshimeri ser. 6b SLCC5334		23	23
No Yes	Listeria innocua Clip11262		23	23
No Yes	Listeria seeligeri ser. 1/2b SLCC3954		23	23
No Yes	Listeria monocytogenes EGD-e		29	29
No Yes	Lysinibacillus sphaericus C3-41		7	7
No Yes	Oceanobacillus iheyensis HTE831		16	16
No Yes	Anoxybacillus flavithermus WK1		15	15
No Yes	Geobacillus sp. WCH70		12	12
No Yes	Geobacillus thermodenitrificans NG80-2		25	25
No Yes	Geobacillus kaustophilus HTA426		16	16
No Yes	Bacillus subtilis ssp. subtilis 168		29	29
No Yes	Bacillus licheniformis ATCC 14580		32	32
No Yes	Bacillus amyloliquefaciens FZB42		23	23
No Yes	Bacillus halodurans C-125		35	35
No Yes	Bacillus weihenstephanensis KBAB4		22	22
No Yes	Bacillus thuringiensis ser. konkukian 97-27		22	22
No Yes	Bacillus cereus ATCC 14579		23	23
No Yes	Bacillus anthracis Ames Ancestor		21	21
No Yes	Bacillus pseudofirmus OF4		15	15
No Yes	Bacillus clausii KSM-K16		25	25
No Yes	Bacillus pumilus SAFR-032		17	17
No Yes	Bacillus megaterium QM B1551		28	28
No Yes	Macrococcus caseolyticus JCSC5402		9	9
No Yes	Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305		10	10
No Yes	Staphylococcus lugdunensis HKU09-01		8	8
No Yes	Staphylococcus haemolyticus JCSC1435		11	11
No Yes	Staphylococcus epidermidis RP62A		4	4
No Yes	Staphylococcus carnosus ssp. carnosus TM300		5	5
No Yes	Staphylococcus aureus ssp. aureus NCTC 8325		5	5
No Yes	Nautilia profundicola AmH		1	1
No Yes	Sulfurospirillum deleyianum DSM 6946		4	4
No Yes	Arcobacter butzleri RM4018		6	6
No Yes	Campylobacter curvus 525.92		1	1
No Yes	Campylobacter concisus 13826		1	1
No Yes	Campylobacter fetus ssp. fetus 82-40		1	1
No Yes	Sulfurimonas denitrificans DSM 1251		5	5
No Yes	Wolinella succinogenes DSM 1740		1	1
No Yes	Helicobacter hepaticus ATCC 51449		1	1
No Yes	Nitratiruptor sp. SB155-2		2	2
No Yes	Sulfurovum sp. NBC37-1		3	3
No Yes	Bdellovibrio bacteriovorus HD100		5	5
No Yes	Syntrophus aciditrophicus SB		6	6
No Yes	Syntrophobacter fumaroxidans MPOB		11	11
No Yes	Desulfotalea psychrophila LSv54		4	4
No Yes	Desulfatibacillum alkenivorans AK-01		5	5
No Yes	Desulfobacterium autotrophicum HRM2		5	5
No Yes	Desulfococcus oleovorans Hxd3		6	6
No Yes	Desulfohalobium retbaense DSM 5692		9	9
No Yes	Desulfomicrobium baculatum DSM 4028		4	4
No Yes	Desulfovibrio magneticus RS-1		9	9
No Yes	Desulfovibrio vulgaris Hildenborough		4	4
No Yes	Desulfovibrio salexigens DSM 2638		6	6
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans G20		5	5
No Yes	Pelobacter propionicus DSM 2379		9	9
No Yes	Pelobacter carbinolicus DSM 2380		3	3
No Yes	Geobacter uraniireducens Rf4		7	7
No Yes	Geobacter sp. FRC-32		9	9
No Yes	Geobacter lovleyi SZ		6	6
No Yes	Geobacter bemidjiensis Bem		13	13
No Yes	Geobacter sulfurreducens PCA		8	8
No Yes	Geobacter metallireducens GS-15		8	8
No Yes	Haliangium ochraceum DSM 14365		34	34
No Yes	Sorangium cellulosum So ce 56		61	60
No Yes	Anaeromyxobacter sp. Fw109-5		20	19
No Yes	Anaeromyxobacter dehalogenans 2CP-C		14	13
No Yes	Myxococcus xanthus DK 1622		27	27
No Yes	Magnetococcus sp. MC-1		8	7
No Yes	Sideroxydans lithotrophicus ES-1		3	3
No Yes	Aromatoleum aromaticum EbN1		13	12
No Yes	Dechloromonas aromatica RCB		2	2
No Yes	Thauera sp. MZ1T		8	8
No Yes	Laribacter hongkongensis HLHK9		1	1
No Yes	Chromobacterium violaceum ATCC 12472		10	10
No Yes	Neisseria meningitidis Z2491		1	1
No Yes	Neisseria gonorrhoeae FA 1090		1	1
No Yes	Methylotenera mobilis JLW8		7	7
No Yes	Methylovorus sp. SIP3-4		12	12
No Yes	Methylobacillus flagellatus KT		14	14
No Yes	Thiobacillus denitrificans ATCC 25259		8	7
No Yes	Candidatus Accumulibacter phosphatis clade IIA UW-1		11	10
No Yes	Methylibium petroleiphilum PM1		1	1
No Yes	Leptothrix cholodnii SP-6		16	16
No Yes	Ralstonia eutropha JMP134		10	9
No Yes	Cupriavidus taiwanensis		13	12
No Yes	Ralstonia metallidurans CH34		5	5
No Yes	Ralstonia pickettii 12J		16	15
No Yes	Ralstonia solanacearum GMI1000		7	7
No Yes	Polynucleobacter necessarius ssp. asymbioticus QLW-P1DMWA-1		1	1
No Yes	Burkholderia phytofirmans PsJN		22	21
No Yes	Burkholderia phymatum STM815		27	26
No Yes	Burkholderia thailandensis E264		16	15
No Yes	Burkholderia pseudomallei K96243		22	21
No Yes	Burkholderia mallei ATCC 23344		14	14
No Yes	Burkholderia sp. 383		23	22
No Yes	Burkholderia ambifaria AMMD		26	25
No Yes	Burkholderia cenocepacia AU 1054		25	24
No Yes	Burkholderia multivorans ATCC 17616		15	14
No Yes	Burkholderia vietnamiensis G4		18	17
No Yes	Burkholderia xenovorans LB400		20	19
No Yes	Burkholderia glumae BGR1		22	21
No Yes	Verminephrobacter eiseniae EF01-2		4	4
No Yes	Delftia acidovorans SPH-1		2	2
No Yes	Polaromonas sp. JS666		3	3
No Yes	Polaromonas naphthalenivorans CJ2		7	7
No Yes	Variovorax paradoxus S110		18	17
No Yes	Rhodoferax ferrireducens T118		16	15
No Yes	Diaphorobacter sp. TPSY		1	1
No Yes	Acidovorax sp. JS42		2	2
No Yes	Acidovorax citrulli AAC00-1		14	13
No Yes	Comamonas sp. CNB-1		3	3
No Yes	Herminiimonas arsenicoxydans		1	1
No Yes	Janthinobacterium sp. Marseille		1	1
No Yes	Bordetella petrii DSM 12804		10	9
No Yes	Bordetella avium 197N		3	3
No Yes	Bordetella pertussis Tohama I		7	7
No Yes	Bordetella parapertussis 12822		8	8
No Yes	Bordetella bronchiseptica RB50		10	9
No Yes	Nitrosospira multiformis ATCC 25196		14	13
No Yes	Nitrosomonas eutropha C91		5	5
No Yes	Nitrosomonas europaea ATCC 19718		2	2
No Yes	Caulobacter sp. K31		38	38
No Yes	Caulobacter crescentus CB15		24	24
No Yes	Caulobacter segnis ATCC 21756		34	34
No Yes	Phenylobacterium zucineum HLK1		14	13
No Yes	Erythrobacter litoralis HTCC2594		8	8
No Yes	Sphingopyxis alaskensis RB2256		10	10
No Yes	Novosphingobium aromaticivorans DSM 12444		23	23
No Yes	Sphingobium japonicum UT26S		24	23
No Yes	Sphingomonas wittichii RW1		2	2
No Yes	Zymomonas mobilis ssp. mobilis ZM4		3	3
No Yes	Maricaulis maris MCS10		11	11
No Yes	Hirschia baltica ATCC 49814		22	22
No Yes	Hyphomonas neptunium ATCC 15444		6	6
No Yes	Dinoroseobacter shibae DFL 12		7	7
No Yes	Jannaschia sp. CCS1		11	11
No Yes	Ruegeria sp. TM1040		5	5
No Yes	Ruegeria pomeroyi DSS-3		4	4
No Yes	Roseobacter denitrificans OCh 114		10	10
No Yes	Rhodobacter sphaeroides 2.4.1		17	17
No Yes	Rhodobacter capsulatus SB1003		10	10
No Yes	Paracoccus denitrificans PD1222		8	8
No Yes	Magnetospirillum magneticum AMB-1		10	10
No Yes	Rhodospirillum centenum SW		18	15
No Yes	Rhodospirillum rubrum ATCC 11170		15	15
No Yes	Azospirillum sp. B510		2	2
No Yes	Granulibacter bethesdensis CGDNIH1		9	9
No Yes	Gluconacetobacter diazotrophicus PAl 5		9	9
No Yes	Gluconobacter oxydans 621H		2	2
No Yes	Acetobacter pasteurianus IFO 3283-01		5	5
No Yes	alpha proteobacterium IMCC1322		2	2
No Yes	Candidatus Pelagibacter ubique HTCC1062		1	1
No Yes	Anaplasma marginale St. Maries		1	1
No Yes	Anaplasma centrale Israel		1	1
No Yes	Orientia tsutsugamushi Boryong		1	1
No Yes	Rickettsia bellii RML369-C		2	2
No Yes	Rickettsia canadensis McKiel		1	1
No Yes	Rickettsia typhi Wilmington		1	1
No Yes	Rickettsia prowazekii Madrid E		1	1
No Yes	Rickettsia peacockii Rustic		1	1
No Yes	Rickettsia felis URRWXCal2		2	2
No Yes	Rickettsia massiliae MTU5		1	1
No Yes	Rickettsia africae ESF-5		1	1
No Yes	Rickettsia akari Hartford		1	1
No Yes	Rickettsia rickettsii Sheila Smith		1	1
No Yes	Rickettsia conorii Malish 7		1	1
No Yes	Wolbachia endosymbiont of Culex_quinquefasciatus Pel		2	2
No Yes	Wolbachia endosymbiont of Drosophila melanogaster (Genus only)		1	1
No Yes	Wolbachia sp. wRi		2	2
No Yes	Xanthobacter autotrophicus Py2		11	11
No Yes	Azorhizobium caulinodans ORS 571		14	14
No Yes	Methylobacterium chloromethanicum CM4		17	14
No Yes	Methylobacterium extorquens PA1		17	13
No Yes	Methylobacterium sp. 4-46		29	26
No Yes	Methylobacterium populi BJ001		17	14
No Yes	Methylobacterium nodulans ORS 2060		26	23
No Yes	Methylobacterium radiotolerans JCM 2831		21	18
No Yes	Ochrobactrum anthropi ATCC 49188		10	10
No Yes	Brucella microti CCM 4915		6	6
No Yes	Brucella canis ATCC 23365		6	6
No Yes	Brucella suis 1330		6	6
No Yes	Brucella melitensis bv. 1 16M		7	7
No Yes	Brucella ovis ATCC 25840		6	6
No Yes	Brucella abortus bv. 1 9-941		4	4
No Yes	Sinorhizobium medicae WSM419		9	9
No Yes	Sinorhizobium meliloti 1021		9	9
No Yes	Rhizobium etli CFN 42		24	23
No Yes	Rhizobium sp. NGR234		10	10
No Yes	Rhizobium leguminosarum bv. viciae 3841		26	26
No Yes	Agrobacterium vitis S4		28	27
No Yes	Agrobacterium radiobacter K84		26	26
No Yes	Agrobacterium tumefaciens C58		19	19
No Yes	Chelativorans sp. BNC1		15	14
No Yes	Parvibaculum lavamentivorans DS-1		15	15
No Yes	Mesorhizobium loti MAFF303099		14	14
No Yes	Methylocella silvestris BL2		11	10
No Yes	Beijerinckia indica ssp. indica ATCC 9039		8	8
No Yes	Oligotropha carboxidovorans OM5		11	11
No Yes	Rhodopseudomonas palustris CGA009		17	17
No Yes	Nitrobacter winogradskyi Nb-255		11	11
No Yes	Nitrobacter hamburgensis X14		12	12
No Yes	Bradyrhizobium sp. ORS278		24	23
No Yes	Bradyrhizobium japonicum USDA 110		24	24
No Yes	Acidithiobacillus ferrooxidans ATCC 23270		5	5
No Yes	Mannheimia succiniciproducens MBEL55E		12	12
No Yes	Aggregatibacter aphrophilus NJ8700		12	12
No Yes	Aggregatibacter actinomycetemcomitans D11S-1		8	8
No Yes	Haemophilus somnus 129PT		7	7
No Yes	Pasteurella multocida ssp. multocida Pm70		4	4
No Yes	Haemophilus parasuis SH0165		6	6
No Yes	Haemophilus ducreyi 35000HP		1	1
No Yes	Haemophilus influenzae Rd KW20		4	4
No Yes	Actinobacillus succinogenes 130Z		11	11
No Yes	Actinobacillus pleuropneumoniae L20		7	7
No Yes	Tolumonas auensis DSM 9187		26	26
No Yes	Aeromonas salmonicida ssp. salmonicida A449		23	23
No Yes	Aeromonas hydrophila ssp. hydrophila ATCC 7966		23	23
No Yes	Aliivibrio salmonicida LFI1238		11	11
No Yes	Vibrio fischeri ES114		19	19
No Yes	Vibrio parahaemolyticus RIMD 2210633		24	24
No Yes	Vibrio harveyi ATCC BAA-1116		28	28
No Yes	Vibrio sp. Ex25		23	23
No Yes	Vibrio splendidus LGP32		19	19
No Yes	Vibrio vulnificus YJ016 (Good annotation)		33	33
No Yes	Vibrio cholerae O1 biov. El Tor N16961		16	16
No Yes	Photobacterium profundum SS9		25	25
No Yes	Psychromonas ingrahamii 37		21	21
No Yes	Idiomarina loihiensis L2TR		2	2
No Yes	Shewanella piezotolerans WP3		16	16
No Yes	Shewanella loihica PV-4		11	11
No Yes	Shewanella halifaxensis HAW-EB4		5	5
No Yes	Shewanella sediminis HAW-EB3		3	3
No Yes	Shewanella denitrificans OS217		10	10
No Yes	Shewanella pealeana ATCC 700345		6	6
No Yes	Shewanella oneidensis MR-1		9	9
No Yes	Shewanella baltica OS155		15	15
No Yes	Shewanella woodyi ATCC 51908		20	20
No Yes	Shewanella sp. MR-7		11	11
No Yes	Shewanella amazonensis SB2B		15	15
No Yes	Shewanella violacea DSS12		13	13
No Yes	Shewanella frigidimarina NCIMB 400		14	14
No Yes	Shewanella putrefaciens CN-32		5	5
No Yes	Colwellia psychrerythraea 34H		26	26
No Yes	Pseudoalteromonas atlantica T6c		36	36
No Yes	Pseudoalteromonas haloplanktis TAC125		8	8
No Yes	Teredinibacter turnerae T7901		56	56
No Yes	Saccharophagus degradans 2-40		81	79
No Yes	Marinobacter aquaeolei VT8		7	7
No Yes	Alteromonas macleodii Deep ecotype		20	20
No Yes	Hahella chejuensis KCTC 2396		30	29
No Yes	Alcanivorax borkumensis SK2		4	4
No Yes	Marinomonas sp. MWYL1		19	19
No Yes	Chromohalobacter salexigens DSM 3043		3	3
No Yes	Methylococcus capsulatus Bath		9	9
No Yes	Dichelobacter nodosus VCS1703A		1	1
No Yes	Stenotrophomonas maltophilia R551-3		14	14
No Yes	Xylella fastidiosa 9a5c		13	13
No Yes	Xanthomonas axonopodis pv. citri 306		59	58
No Yes	Xanthomonas albilineans		29	29
No Yes	Xanthomonas oryzae pv. oryzae KACC10331		41	40
No Yes	Xanthomonas campestris pv. campestris ATCC 33913 (Completed 2001)		57	56
No Yes	Halothiobacillus neapolitanus c2		3	3
No Yes	Alkalilimnicola ehrlichii MLHE-1		3	3
No Yes	Thioalkalivibrio sp. HL-EbGR7		4	4
No Yes	Halorhodospira halophila SL1		4	4
No Yes	Allochromatium vinosum DSM 180		11	11
No Yes	Nitrosococcus halophilus Nc4		14	14
No Yes	Nitrosococcus oceani ATCC 19707		10	10
No Yes	Coxiella burnetii RSA 493		1	1
No Yes	Legionella longbeachae NSW150		7	7
No Yes	Legionella pneumophila ssp. pneumophila Philadelphia 1		9	9
No Yes	Kangiella koreensis DSM 16069		1	1
No Yes	Candidatus Ruthia magnifica Cm		1	1
No Yes	Cronobacter turicensis z3032		30	30
No Yes	Cronobacter sakazakii ATCC BAA-894		31	31
No Yes	Candidatus Riesia pediculicola USDA		1	1
No Yes	Dickeya zeae Ech1591		19	19
No Yes	Dickeya dadantii Ech703		19	19
No Yes	Candidatus Hamiltonella defensa 5AT		3	3
No Yes	Pectobacterium wasabiae WPP163		27	27
No Yes	Pectobacterium atrosepticum SCRI1043		28	28
No Yes	Pectobacterium carotovorum ssp. carotovorum PC1		27	27
No Yes	Sodalis glossinidius morsitans		5	5
No Yes	Pantoea ananatis LMG 20103		26	26
No Yes	Photorhabdus asymbiotica		13	13
No Yes	Photorhabdus luminescens ssp. laumondii TTO1		16	16
No Yes	Edwardsiella ictaluri 93-146		13	12
No Yes	Edwardsiella tarda EIB202		15	15
No Yes	Yersinia pseudotuberculosis IP 32953		19	19
No Yes	Yersinia pestis CO92		16	16
No Yes	Yersinia enterocolitica ssp. enterocolitica 8081		19	19
No Yes	Xenorhabdus bovienii SS-2004		9	9
No Yes	Shigella sonnei Ss046		18	18
No Yes	Shigella flexneri 2a 2457T		17	17
No Yes	Shigella dysenteriae Sd197		11	11
No Yes	Shigella boydii Sb227		14	14
No Yes	Serratia proteamaculans 568		28	27
No Yes	Salmonella enterica ssp. enterica ser. Typhimurium LT2		20	20
No Yes	Proteus mirabilis HI4320		1	1
No Yes	Klebsiella variicola At-22		32	32
No Yes	Klebsiella pneumoniae ssp. pneumoniae MGH 78578		30	30
No Yes	Escherichia fergusonii ATCC 35469		17	17
No Yes	Escherichia coli K-12 subMG1655		21	21
No Yes	Erwinia tasmaniensis Et1/99		10	10
No Yes	Erwinia pyrifoliae Ep1/96		9	9
No Yes	Erwinia amylovora ATCC 49946		12	12
No Yes	Enterobacter sp. 638		25	25
No Yes	Citrobacter rodentium ICC168		31	31
No Yes	Citrobacter koseri ATCC BAA-895		19	19
No Yes	Azotobacter vinelandii DJ		18	18
No Yes	Pseudomonas entomophila L48		16	16
No Yes	Pseudomonas syringae pv. tomato DC3000		23	23
No Yes	Pseudomonas stutzeri A1501		20	20
No Yes	Pseudomonas putida KT2440		15	15
No Yes	Pseudomonas fluorescens Pf-5		20	20
No Yes	Pseudomonas mendocina ymp		17	17
No Yes	Pseudomonas aeruginosa PAO1		14	14
No Yes	Cellvibrio japonicus Ueda107		71	71
No Yes	Psychrobacter sp. PRwf-1		1	1
No Yes	Psychrobacter arcticus 273-4		1	1
No Yes	Psychrobacter cryohalolentis K5		1	1
No Yes	Acinetobacter sp. ADP1		2	2
No Yes	Acinetobacter baumannii ATCC 17978		2	2
No Yes	Thiomicrospira crunogena XCL-2		5	5
No Yes	Francisella philomiragia ssp. philomiragia ATCC 25017		14	13
No Yes	Francisella tularensis ssp. tularensis SCHU S4		8	7
No Yes	Gloeobacter violaceus PCC 7421		18	18
No Yes	Acaryochloris marina MBIC11017		21	21
No Yes	Prochlorococcus marinus MIT 9313		6	6
No Yes	Nostoc punctiforme PCC 73102		32	32
No Yes	Nostoc sp. PCC 7120		21	21
No Yes	Anabaena variabilis ATCC 29413		16	16
No Yes	Trichodesmium erythraeum IMS101		15	15
No Yes	Thermosynechococcus elongatus BP-1		5	5
No Yes	cyanobacterium UCYN-A		2	2
No Yes	Cyanothece sp. ATCC 51142		25	25
No Yes	Synechocystis sp. PCC 6803		9	9
No Yes	Synechococcus elongatus PCC 6301		6	6
No Yes	Microcystis aeruginosa NIES-843		12	12
No Yes	Nitrosopumilus maritimus SCM1		1	1
No Yes	Candidatus Korarchaeum cryptofilum OPF8		3	3
No Yes	Methanocella paludicola SANAE		1	1
No Yes	Methanosaeta thermophila PT		1	1
No Yes	Methanosarcina acetivorans C2A		3	3
No Yes	Methanosarcina barkeri Fusaro		2	2
No Yes	Methanosphaerula palustris E1-9c		1	1
No Yes	Candidatus Methanoregula boonei 6A8		1	1
No Yes	Methanospirillum hungatei JF-1		4	4
No Yes	Methanoculleus marisnigri JR1		4	4
No Yes	Methanopyrus kandleri AV19		4	4
No Yes	Thermococcus onnurineus NA1		5	5
No Yes	Thermococcus kodakarensis KOD1		9	8
No Yes	Thermococcus gammatolerans EJ3		6	6
No Yes	Thermococcus sibiricus MM 739		4	4
No Yes	Pyrococcus horikoshii OT3		4	4
No Yes	Pyrococcus abyssi GE5		4	4
No Yes	Pyrococcus furiosus DSM 3638		12	11
No Yes	Thermoplasma volcanium GSS1		4	4
No Yes	Thermoplasma acidophilum DSM 1728		3	3
No Yes	Picrophilus torridus DSM 9790		8	8
No Yes	Haloquadratum walsbyi DSM 16790		4	4
No Yes	Halomicrobium mukohataei DSM 12286		15	15
No Yes	Halorhabdus utahensis DSM 12940		31	31
No Yes	Haloterrigena turkmenica DSM 5511		8	8
No Yes	Natrialba magadii ATCC 43099		1	1
No Yes	Halorubrum lacusprofundi ATCC 49239		6	6
No Yes	Haloferax volcanii DS2		5	5
No Yes	Halobacterium salinarum R1		2	2
No Yes	Halobacterium sp. NRC-1		2	2
No Yes	Haloarcula marismortui ATCC 43049		7	7
No Yes	Methanocaldococcus sp. FS406-22		1	1
No Yes	Methanocaldococcus vulcanius M7		1	1
No Yes	Methanocaldococcus jannaschii DSM 2661		1	1
No Yes	Methanothermobacter thermautotrophicus Delta H		1	1
No Yes	uncultured methanogenic archaeon RC-I		1	1
No Yes	Aciduliprofundum boonei T469		3	3
No Yes	Hyperthermus butylicus DSM 5456		1	1
No Yes	Staphylothermus marinus F1		3	3
No Yes	Desulfurococcus kamchatkensis 1221n		5	5
No Yes	Metallosphaera sedula DSM 5348		1	1
No Yes	Sulfolobus tokodaii 7		9	9
No Yes	Sulfolobus islandicus Y.N.15.51		13	13
No Yes	Sulfolobus solfataricus P2		13	13
No Yes	Sulfolobus acidocaldarius DSM 639		4	4
No Yes	Thermofilum pendens Hrk 5		8	8
No Yes	Caldivirga maquilingensis IC-167		21	21
No Yes	Pyrobaculum calidifontis JCM 11548		4	4
No Yes	Pyrobaculum arsenaticum DSM 13514		6	6
No Yes	Pyrobaculum aerophilum IM2		5	5
No Yes	Pyrobaculum islandicum DSM 4184		5	5
No Yes	Thermoproteus neutrophilus V24Sta		2	2
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	81	77
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	90	84
No Yes	Cryptococcus neoformans var. grubii H99		52	50
No Yes	Cryptococcus neoformans B-3501A		45	45
No Yes	Ajellomyces dermatitidis ER-3		43	43
No Yes	Histoplasma capsulatum H143		41	41
No Yes	Histoplasma capsulatum H88		40	40
No Yes	Histoplasma capsulatum G186AR		42	42
No Yes	Paracoccidioides brasiliensis Pb01		37	37
No Yes	Paracoccidioides brasiliensis Pb03		35	35
No Yes	Coccidioides posadasii str. Silveira		36	36
No Yes	Coccidioides immitis RMSCC 3703		36	36
No Yes	Coccidioides immitis RMSCC 2394		36	36
No Yes	Coccidioides immitis H538.4		39	39
No Yes	Aspergillus fumigatus A1163		125	125
No Yes	Candida albicans WO-1		30	30
No Yes	Saccharomyces cerevisiae YJM789		30	30
No Yes	Saccharomyces cerevisiae RM11-1a		24	24
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	26	26
No Yes	Schizosaccharomyces pombe 972h-		28	28
No Yes	Batrachochytrium dendrobatidis JAM81		25	25
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	350	338
No Yes	Plasmodium falciparum HB3		2	2
No Yes	Plasmodium falciparum Dd2		2	2
No Yes	Candidatus Phytoplasma australiense		1	1
No Yes	Mycoplasma hyopneumoniae 7448		1	1
No Yes	Mycoplasma hyopneumoniae J		1	1
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis JB197		7	7
No Yes	Leptospira interrogans ser. Copenhageni Fiocruz L1-130		10	10
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Ames)		13	13
No Yes	Treponema pallidum ssp. pallidum SS14		2	1
No Yes	Borrelia burgdorferi ZS7		4	4
No Yes	Bifidobacterium longum ssp. infantis ATCC 15697		35	35
No Yes	Bifidobacterium longum		36	36
No Yes	Bifidobacterium animalis ssp. lactis Bl-04		30	30
No Yes	Bifidobacterium animalis ssp. lactis DSM 10140		30	30
No Yes	Frankia sp. EAN1pec		44	44
No Yes	Propionibacterium acnes SK137		29	29
No Yes	Mycobacterium sp. KMS		18	18
No Yes	Mycobacterium sp. JLS		18	18
No Yes	Mycobacterium avium 104		15	15
No Yes	Mycobacterium tuberculosis KZN 1435		14	14
No Yes	Mycobacterium tuberculosis H37Ra		14	14
No Yes	Mycobacterium tuberculosis F11		14	14
No Yes	Mycobacterium tuberculosis CDC1551		14	14
No Yes	Mycobacterium bovis BCG Tokyo 172		14	14
No Yes	Mycobacterium bovis BCG Pasteur 1173P2		14	14
No Yes	Mycobacterium leprae Br4923		2	2
No Yes	Corynebacterium glutamicum R		14	14
No Yes	Corynebacterium glutamicum ATCC 13032 Bielefeld		12	12
No Yes	Clavibacter michiganensis ssp. sepedonicus		32	32
No Yes	Chlorobium phaeobacteroides BS1		8	8
No Yes	Porphyromonas gingivalis ATCC 33277		13	13
No Yes	Bacteroides fragilis YCH46		86	85
No Yes	Salinibacter ruber		14	14
No Yes	Chlamydophila pneumoniae J138		3	3
No Yes	Chlamydophila pneumoniae CWL029		3	3
No Yes	Chlamydophila pneumoniae AR39		3	3
No Yes	Chlamydia trachomatis B/TZ1A828/OT		3	3
No Yes	Chlamydia trachomatis B/Jali20/OT		3	3
No Yes	Chlamydia trachomatis L2b/UCH-1/proctitis		3	3
No Yes	Chlamydia trachomatis 434/Bu		3	3
No Yes	Chlamydia trachomatis A/HAR-13		3	3
No Yes	Thermus thermophilus HB8		5	5
No Yes	Desulfitobacterium hafniense DCB-2		8	7
No Yes	Clostridium kluyveri NBRC 12016		7	7
No Yes	Clostridium perfringens SM101		22	22
No Yes	Clostridium perfringens ATCC 13124		34	33
No Yes	Clostridium difficile R20291		19	19
No Yes	Clostridium difficile CD196		20	20
No Yes	Clostridium botulinum F Langeland		17	17
No Yes	Clostridium botulinum E3 Alaska E43		17	17
No Yes	Clostridium botulinum B1 Okra		16	16
No Yes	Clostridium botulinum Ba4 657		16	16
No Yes	Clostridium botulinum B Eklund 17B		26	26
No Yes	Clostridium botulinum A2 Kyoto		17	17
No Yes	Clostridium botulinum A3 Loch Maree		15	15
No Yes	Clostridium botulinum A Hall		15	15
No Yes	Clostridium botulinum A ATCC 19397		16	16
No Yes	Lactobacillus casei BL23		33	33
No Yes	Lactobacillus rhamnosus Lc 705		38	38
No Yes	Lactobacillus johnsonii FI9785		21	21
No Yes	Lactobacillus reuteri JCM 1112		11	10
No Yes	Lactobacillus plantarum JDM1		38	38
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC BAA-365		10	10
No Yes	Lactococcus lactis ssp. lactis KF147		33	33
No Yes	Lactococcus lactis ssp. cremoris MG1363		27	27
No Yes	Lactococcus lactis ssp. cremoris SK11		25	25
No Yes	Streptococcus equi ssp. equi 4047		20	20
No Yes	Streptococcus equi ssp. zooepidemicus		23	23
No Yes	Streptococcus pyogenes MGAS10750		15	15
No Yes	Streptococcus pyogenes MGAS10270		18	18
No Yes	Streptococcus pyogenes MGAS2096		15	15
No Yes	Streptococcus pyogenes MGAS9429		14	14
No Yes	Streptococcus pyogenes MGAS6180		16	16
No Yes	Streptococcus pyogenes NZ131		13	13
No Yes	Streptococcus pyogenes MGAS8232		13	13
No Yes	Streptococcus pyogenes MGAS10394		13	13
No Yes	Streptococcus pyogenes Manfredo		14	14
No Yes	Streptococcus pyogenes MGAS315		13	13
No Yes	Streptococcus pyogenes SSI-1		13	13
No Yes	Streptococcus pyogenes MGAS5005		15	15
No Yes	Streptococcus pneumoniae ATCC 700669		24	23
No Yes	Streptococcus pneumoniae CGSP14		28	27
No Yes	Streptococcus pneumoniae G54		28	27
No Yes	Streptococcus pneumoniae P1031		24	23
No Yes	Streptococcus pneumoniae JJA		22	21
No Yes	Streptococcus pneumoniae 70585		32	31
No Yes	Streptococcus pneumoniae Hungary19A-6		26	25
No Yes	Streptococcus pneumoniae Taiwan19F-14		25	24
No Yes	Streptococcus pneumoniae D39		25	24
No Yes	Streptococcus pneumoniae R6 (Non-virulent)		26	25
No Yes	Streptococcus agalactiae A909		14	14
No Yes	Streptococcus agalactiae 2603V/R		12	12
No Yes	Streptococcus mutans NN2025		22	19
No Yes	Streptococcus thermophilus LMD-9		4	4
No Yes	Streptococcus thermophilus CNRZ1066 (Younger strain)		15	15
No Yes	Streptococcus suis BM407		26	25
No Yes	Streptococcus suis SC84		25	24
No Yes	Streptococcus suis 98HAH33		29	28
No Yes	Streptococcus suis P1/7		25	24
No Yes	Listeria monocytogenes 08-5578		30	30
No Yes	Listeria monocytogenes 08-5923		30	30
No Yes	Listeria monocytogenes Clip80459		29	29
No Yes	Listeria monocytogenes HCC23		27	27
No Yes	Listeria monocytogenes 4b F2365		29	29
No Yes	Geobacillus sp. Y412MC61		27	27
No Yes	Geobacillus sp. Y412MC10		103	102
No Yes	Bacillus licheniformis ATCC 14580		32	32
No Yes	Bacillus cytotoxicus NVH 391-98		14	14
No Yes	Bacillus thuringiensis Al Hakam		20	20
No Yes	Bacillus cereus 03BB102		21	21
No Yes	Bacillus cereus AH820		24	24
No Yes	Bacillus cereus AH187		21	21
No Yes	Bacillus cereus B4264		22	22
No Yes	Bacillus cereus G9842		23	23
No Yes	Bacillus cereus Q1		20	20
No Yes	Bacillus cereus E33L		20	20
No Yes	Bacillus cereus ATCC 10987		19	19
No Yes	Bacillus anthracis A0248		19	19
No Yes	Bacillus anthracis CDC 684		21	21
No Yes	Bacillus anthracis Sterne		21	21
No Yes	Bacillus anthracis Ames		21	21
No Yes	Bacillus megaterium DSM319		27	27
No Yes	Staphylococcus epidermidis ATCC 12228		4	4
No Yes	Staphylococcus aureus RF122		5	5
No Yes	Staphylococcus aureus ssp. aureus ED98		5	5
No Yes	Staphylococcus aureus ssp. aureus Newman		5	5
No Yes	Staphylococcus aureus ssp. aureus Mu3		5	5
No Yes	Staphylococcus aureus ssp. aureus USA300_TCH1516		5	5
No Yes	Staphylococcus aureus ssp. aureus USA300_FPR3757		5	5
No Yes	Staphylococcus aureus ssp. aureus JH1		5	5
No Yes	Staphylococcus aureus ssp. aureus JH9		5	5
No Yes	Staphylococcus aureus ssp. aureus MSSA476		5	5
No Yes	Staphylococcus aureus ssp. aureus MRSA252		5	5
No Yes	Staphylococcus aureus ssp. aureus MW2		5	5
No Yes	Staphylococcus aureus ssp. aureus N315		5	5
No Yes	Staphylococcus aureus ssp. aureus Mu50		5	5
No Yes	Staphylococcus aureus ssp. aureus COL		5	5
No Yes	Desulfovibrio vulgaris DP4		4	4
No Yes	Desulfovibrio vulgaris Miyazaki F		3	3
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans ATCC 27774		1	1
No Yes	Geobacter sp. M21		12	12
No Yes	Anaeromyxobacter sp. K		16	15
No Yes	Anaeromyxobacter dehalogenans 2CP-1		15	14
No Yes	Azoarcus sp. BH72		16	15
No Yes	Neisseria meningitidis alpha14		1	1
No Yes	Neisseria meningitidis 053442		1	1
No Yes	Neisseria meningitidis FAM18		1	1
No Yes	Neisseria meningitidis MC58		1	1
No Yes	Neisseria gonorrhoeae NCCP11945		1	1
No Yes	Ralstonia eutropha H16		12	11
No Yes	Ralstonia pickettii 12D		15	14
No Yes	Polynucleobacter necessarius ssp. necessarius STIR1		1	1
No Yes	Burkholderia sp. CCGE1002		28	27
No Yes	Burkholderia pseudomallei MSHR346		16	15
No Yes	Burkholderia pseudomallei 1106a		22	21
No Yes	Burkholderia pseudomallei 668		21	20
No Yes	Burkholderia pseudomallei 1710b		21	20
No Yes	Burkholderia mallei NCTC 10229		20	19
No Yes	Burkholderia mallei NCTC 10247		20	19
No Yes	Burkholderia mallei SAVP1		20	19
No Yes	Burkholderia ambifaria MC40-6		23	22
No Yes	Burkholderia cenocepacia MC0-3		21	20
No Yes	Burkholderia cenocepacia HI2424		24	23
No Yes	Burkholderia cenocepacia J2315		19	19
No Yes	Burkholderia multivorans ATCC 17616		15	14
No Yes	Caulobacter crescentus NA1000		24	24
No Yes	Zymomonas mobilis ssp. mobilis NCIMB 11163		3	3
No Yes	Rhodobacter sphaeroides KD131		17	17
No Yes	Rhodobacter sphaeroides ATCC 17025		17	17
No Yes	Rhodobacter sphaeroides ATCC 17029		17	17
No Yes	Gluconacetobacter diazotrophicus PAl 5		9	9
No Yes	Anaplasma marginale Florida		1	1
No Yes	Orientia tsutsugamushi Ikeda		2	2
No Yes	Rickettsia bellii OSU 85-389		2	2
No Yes	Rickettsia rickettsii Iowa		1	1
No Yes	Methylobacterium extorquens DM4		17	14
No Yes	Methylobacterium extorquens AM1		17	14
No Yes	Brucella suis ATCC 23445		5	5
No Yes	Brucella melitensis ATCC 23457		5	5
No Yes	Brucella abortus S19		5	5
No Yes	Brucella melitensis biov. Abortus 2308		4	4
No Yes	Rhizobium etli CIAT 652		21	20
No Yes	Rhizobium leguminosarum bv. trifolii WSM2304		20	20
No Yes	Rhizobium leguminosarum bv. trifolii WSM1325		25	25
No Yes	Rhodopseudomonas palustris TIE-1		17	17
No Yes	Rhodopseudomonas palustris HaA2		17	17
No Yes	Rhodopseudomonas palustris BisB5		16	16
No Yes	Rhodopseudomonas palustris BisB18		18	18
No Yes	Rhodopseudomonas palustris BisA53		17	17
No Yes	Bradyrhizobium sp. BTAi1		16	16
No Yes	Acidithiobacillus ferrooxidans ATCC 53993		5	5
No Yes	Haemophilus somnus 2336		7	7
No Yes	Haemophilus influenzae PittGG		4	4
No Yes	Haemophilus influenzae PittEE		3	3
No Yes	Haemophilus influenzae 86-028NP		4	4
No Yes	Actinobacillus pleuropneumoniae ser. 3 JL03		7	7
No Yes	Actinobacillus pleuropneumoniae ser. 7 AP76		7	7
No Yes	Vibrio fischeri MJ11		20	20
No Yes	Vibrio vulnificus CMCP6 (Poor annotation)		30	30
No Yes	Vibrio cholerae M66-2		15	15
No Yes	Vibrio cholerae O395		17	17
No Yes	Vibrio cholerae MJ-1236		18	18
No Yes	Shewanella sp. W3-18-1		5	5
No Yes	Shewanella sp. ANA-3		11	11
No Yes	Shewanella baltica OS223		19	19
No Yes	Shewanella baltica OS185		17	17
No Yes	Shewanella baltica OS195		16	16
No Yes	Shewanella sp. MR-4		11	11
No Yes	Stenotrophomonas maltophilia K279a		19	19
No Yes	Xylella fastidiosa M23		13	13
No Yes	Xylella fastidiosa M12		12	12
No Yes	Xylella fastidiosa Temecula1		13	13
No Yes	Xanthomonas campestris pv. vesicatoria 85-10 (Completed 2005)		55	54
No Yes	Xanthomonas oryzae pv. oryzae PXO99A		37	36
No Yes	Xanthomonas oryzae pv. oryzae MAFF 311018		42	41
No Yes	Xanthomonas campestris pv. campestris B100		57	56
No Yes	Xanthomonas campestris pv. campestris 8004 (Completed 2005)		57	56
No Yes	Thioalkalivibrio sp. K90mix		3	3
No Yes	Coxiella burnetii CbuK_Q154		1	1
No Yes	Coxiella burnetii CbuG_Q212		1	1
No Yes	Coxiella burnetii Dugway 5J108-111		3	3
No Yes	Coxiella burnetii RSA 331		4	4
No Yes	Legionella pneumophila Corby		8	8
No Yes	Legionella pneumophila Paris		10	10
No Yes	Legionella pneumophila Lens		9	9
No Yes	Dickeya dadantii Ech586		20	20
No Yes	Yersinia pseudotuberculosis PB1/+		19	19
No Yes	Yersinia pseudotuberculosis YPIII		19	19
No Yes	Yersinia pseudotuberculosis IP 31758		19	19
No Yes	Yersinia pestis Z176003		17	17
No Yes	Yersinia pestis Pestoides F		16	16
No Yes	Yersinia pestis Nepal516		18	18
No Yes	Yersinia pestis Antiqua		18	18
No Yes	Yersinia pestis Angola		14	14
No Yes	Yersinia pestis biov. Microtus 91001		17	17
No Yes	Yersinia pestis KIM		17	17
No Yes	Shigella flexneri 5 8401		19	19
No Yes	Shigella flexneri 2a 301		16	16
No Yes	Shigella boydii CDC 3083-94		14	14
No Yes	Salmonella enterica ssp. arizonae ser. 62:z4,z23:--		18	18
No Yes	Salmonella enterica ssp. enterica ser. Schwarzengrund CVM19633		19	19
No Yes	Salmonella enterica ssp. enterica ser. Enteritidis P125109		19	19
No Yes	Salmonella enterica ssp. enterica ser. Choleraesuis str. SC-B67		17	17
No Yes	Salmonella enterica ssp. enterica ser. Newport SL254		18	18
No Yes	Salmonella enterica ssp. enterica ser. Dublin CT_02021853		17	17
No Yes	Salmonella enterica ssp. enterica ser. Typhi CT18		19	19
No Yes	Salmonella enterica ssp. enterica ser. Typhi Ty2		19	19
No Yes	Salmonella enterica ssp. enterica ser. Agona SL483		19	19
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi C RKS4594		17	17
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi B SPB7		20	20
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A AKU_12601		17	17
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A ATCC 9150		17	17
No Yes	Salmonella enterica ssp. enterica ser. Heidelberg SL476		18	18
No Yes	Salmonella enterica ssp. enterica ser. Gallinarum 287/91		14	14
No Yes	Klebsiella pneumoniae 342		32	32
No Yes	Klebsiella pneumoniae NTUH-K2044		31	31
No Yes	Escherichia coli ED1a		22	22
No Yes	Escherichia coli IAI39		21	21
No Yes	Escherichia coli UMN026		19	19
No Yes	Escherichia coli 55989		20	20
No Yes	Escherichia coli S88		21	21
No Yes	Escherichia coli IAI1		23	23
No Yes	Escherichia coli BL21		19	19
No Yes	Escherichia coli ATCC 8739		22	22
No Yes	Escherichia coli BL21(DE3)		22	22
No Yes	Escherichia coli SMS-3-5		23	23
No Yes	Escherichia coli SE11		22	22
No Yes	Escherichia coli APEC O1		21	21
No Yes	Escherichia coli O103:H2 12009		22	22
No Yes	Escherichia coli UTI89		22	22
No Yes	Escherichia coli 536		21	21
No Yes	Escherichia coli HS		22	22
No Yes	Escherichia coli E24377A		23	23
No Yes	Escherichia coli O55:H7 CB9615		19	19
No Yes	Escherichia coli O26:H11 11368		21	21
No Yes	Escherichia coli CFT073		22	22
No Yes	Escherichia coli O111:H- 11128		20	20
No Yes	Escherichia coli O127:H6 E2348/69		18	18
No Yes	Escherichia coli O157:H7 EDL933		21	21
No Yes	Escherichia coli O157:H7 TW14359		17	17
No Yes	Escherichia coli O157:H7 EC4115		17	17
No Yes	Escherichia coli O157:H7 Sakai		19	19
No Yes	Escherichia coli BW2952		21	21
No Yes	Escherichia coli K-12 subW3110		22	22
No Yes	Escherichia coli K-12 subDH10B		19	19
No Yes	Escherichia coli B REL606		21	21
No Yes	Erwinia amylovora CFBP1430		12	12
No Yes	Pseudomonas syringae pv. phaseolicola 1448A		21	21
No Yes	Pseudomonas syringae pv. syringae B728a		23	23
No Yes	Pseudomonas putida W619		16	16
No Yes	Pseudomonas putida F1		15	15
No Yes	Pseudomonas putida GB-1		14	14
No Yes	Pseudomonas fluorescens SBW25		16	16
No Yes	Pseudomonas fluorescens Pf0-1		15	15
No Yes	Pseudomonas aeruginosa LESB58		14	14
No Yes	Pseudomonas aeruginosa PA7		16	16
No Yes	Pseudomonas aeruginosa UCBPP-PA14		15	15
No Yes	Acinetobacter baumannii AB307-0294		2	2
No Yes	Acinetobacter baumannii AYE		2	2
No Yes	Acinetobacter baumannii SDF		1	1
No Yes	Acinetobacter baumannii AB0057		1	1
No Yes	Acinetobacter baumannii ACICU		2	2
No Yes	Francisella novicida U112		10	9
No Yes	Francisella tularensis ssp. mediasiatica FSC147		8	7
No Yes	Francisella tularensis ssp. holarctica FTNF002-00		10	9
No Yes	Francisella tularensis ssp. holarctica OSU18		10	9
No Yes	Francisella tularensis ssp. holarctica		12	11
No Yes	Francisella tularensis ssp. tularensis WY96-3418		8	7
No Yes	Francisella tularensis ssp. tularensis FSC198		8	7
No Yes	Prochlorococcus marinus NATL1A		5	5
No Yes	Prochlorococcus marinus MIT 9301		4	4
No Yes	Prochlorococcus marinus MIT 9515		4	4
No Yes	Prochlorococcus marinus AS9601		4	4
No Yes	Prochlorococcus marinus ssp. marinus CCMP1375		5	5
No Yes	Prochlorococcus marinus ssp. pastoris CCMP1986		4	4
No Yes	Prochlorococcus marinus MIT 9215		4	4
No Yes	Prochlorococcus marinus MIT 9211		5	5
No Yes	Prochlorococcus marinus MIT 9312		4	4
No Yes	Prochlorococcus marinus MIT 9303		7	7
No Yes	Prochlorococcus marinus NATL2A		5	5
No Yes	Cyanothece sp. PCC 8802		19	19
No Yes	Cyanothece sp. PCC 7425		16	16
No Yes	Cyanothece sp. PCC 7424		33	33
No Yes	Cyanothece sp. PCC 8801		18	18
No Yes	Synechococcus sp. JA-2-3Ba(2-13) (Poor annotation)		10	10
No Yes	Synechococcus sp. JA-3-3Ab (Poor annotation)		10	10
No Yes	Synechococcus sp. CC9902 (Poor annotation)		8	8
No Yes	Synechococcus sp. RCC307		9	9
No Yes	Synechococcus sp. CC9605 (Poor annotation)		9	9
No Yes	Synechococcus sp. WH 8102 (Good annotation)		7	7
No Yes	Synechococcus sp. CC9311		9	9
No Yes	Synechococcus sp. WH 7803		9	9
No Yes	Synechococcus sp. PCC 7002		7	7
No Yes	Synechococcus elongatus PCC 7942		6	6
No Yes	Sulfolobus islandicus Y.G.57.14		12	12
No Yes	Sulfolobus islandicus L.S.2.15		12	12
No Yes	Sulfolobus islandicus M.16.27		12	12
No Yes	Sulfolobus islandicus M.14.25		12	12
No Yes	Sulfolobus islandicus M.16.4		12	12
No Yes	Sulfolobus islandicus L.D.8.5		11	11
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	56	50
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		129	129
No Yes	Lotus japonicus (Early assembly)		31	31
No Yes	Prunus persica (Early draft)	Peach	271	271
No Yes	Manihot esculenta (Early draft)	Cassava	328	328
No Yes	Ricinus communis (Early assembly)	Castor bean	247	246
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	275	275
No Yes	Phoenix dactylifera (Early draft)	Date palm	179	178
No Yes	Trypanosoma vivax (Parial)		1	1
No Yes	Trypanosoma congolense (Partial)		1	1
No Yes	Toxoplasma gondii GT1 (Early assembly)		11	11
No Yes	Toxoplasma gondii VEG (Early assembly)		11	11
No Yes	Toxoplasma gondii RH (Archived)		10	10
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	63	58
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	55	51
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	52	48
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	55	50
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	54	49
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	57	51
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	47	42
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	49	45
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	50	46
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	59	53
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	65	59
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	49	43
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	56	51
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	53	48
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	52	44
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	51	46
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	54	47
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	51	48
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	58	53
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	44	39
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	52	47
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	57	53
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	40	37
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	58	51
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	48	43
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	51	46
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	46	41
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	43	39
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	52	48
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	45	40
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	53	48
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	50	45
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	48	43
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	68	60
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	56	52
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	64	58
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	58	53
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	45	41
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	50	45
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	43	41
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	59	56
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	70	62
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	57	52
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	70	61
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	62	56
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		55	51
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		44	44
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	40	35
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	81	77
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	58	54
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	99	92
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	83	74
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	82	77
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	85	80
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	211	211
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	413	410
No Yes	NCBI viral sequences (Viral)		89	85
No Yes	PDB chains (SCOP 1.73) (PDB)		366	366
No Yes	TargetDB (Targets)		744	739
No Yes	UniProt 15.0 (UniProt)		36992	36471
No Yes	UniProt 15.0 viral sequences (Viral)		133	128