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Type II chitinase family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 56 significant domains in 56 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1c3fA   1.4e-62   0.000000000639   2-239   1edt A:  
1c8xA   1.43e-62   0.000000000633   2-239   1edt A:  
1c8yA   3.36e-62   0.000000000659   2-239   1edt A:  
1c90A   1.59e-62   0.000000000645   2-239   1edt A:  
1c91A   7.96e-63   0.00000000065   2-239   1edt A:  
1c92A   2.99e-62   0.000000000665   2-239   1edt A:  
1c93A   1.95e-61   0.000000000659   2-239   1edt A:  
1cnvA   1.77e-77   0.0000000000479   2-280   1cnv A:  
1ctnA   1.69e-99   0.00000000000302   111-421,494-537   1edq A:133-443,A:517-563  
1d2kA   1.05e-113   0.000000000011   2-266,328-391   1d2k A:36-292,A:355-427  
1e6pA   8.89e-88   0.00000000000594   4-291,379-436   1e6p A:2-291,A:380-446  
1e6zA   1.02e-88   0.00000000000609   3-290,378-435   1e6p A:2-291,A:380-446  
1edqA   2.03e-99   0.0000000000029   111-421,494-537   1edq A:133-443,A:517-563  
1edtA   2.33e-64   0.000000000626   4-244   1edt A:  
1ehnA   1.69e-98   0.00000000000297   111-421,494-537   1edq A:133-443,A:517-563  
1eibA   3.58e-98   0.0000000000031   111-421,494-537   1edq A:133-443,A:517-563  
1eokA   3.33e-55   0.0000000000659   8-284   1eok A:  
1ffrA   2.03e-98   0.000000000003   111-421,494-537   1edq A:133-443,A:517-563  
1goiA   6.13e-88   0.00000000000636   4-291,379-436   1e6p A:2-291,A:380-446  
1guvA   1.23e-110   0.0000000000657   2-250,318-364   1lg2 A:22-266,A:335-386  
1h0iA   1.12e-88   0.00000000000631   4-291,379-436   1e6p A:2-291,A:380-446  
1hjxA   7.4e-101   0.0000000000497   1-240,308-359   1hjx A:22-260,A:329-383  
1hkkA   1.64e-110   0.0000000000682   2-250,318-363   1lg2 A:22-266,A:335-386  
1hkmA   1.33e-110   0.0000000000657   2-250,318-364   1lg2 A:22-266,A:335-386  
1itxA   3.54e-110   0.0000000000064   2-306,378-409   1itx A:33-337,A:410-451  
1jndA   8.25e-78   0.0000000000125   3-278,370-418   1jnd A:2-278,A:371-420  
1k9tA   3.95e-98   0.0000000000031   111-421,494-537   1edq A:133-443,A:517-563  
1kfwA   3.84e-98   0.00000000000138   3-317,378-429   1kfw A:10-327,A:389-444  
1kqzA   1.91e-95   0.000000000104   2-269   2hvm A:  
1kr0A   7.99e-97   0.0000000000985   2-269   2hvm A:  
1kr1A   2.82e-96   0.000000000104   2-269   2hvm A:  
1lg2A   1.74e-110   0.0000000000639   2-250,318-364   1lg2 A:22-266,A:335-386  
1ljyA   2.26e-96   0.0000000000499   1-239,307-358   1ljy A:1-239,A:308-362  
1ll6A   1.4e-112   0.000000000011   2-266,328-391   1d2k A:36-292,A:355-427  
1ll7A   1.06e-112   0.0000000000113   2-266,328-391   1d2k A:36-292,A:355-427  
1narA   1.12e-57   0.0000000000372   5-287   1nar A:  
1nh6A   1.24e-97   0.0000000000031   111-421,494-537   1edq A:133-443,A:517-563  
1o6iA   1.02e-88   0.00000000000609   4-291,379-436   1e6p A:2-291,A:380-446  
1ogbA   1.47e-87   0.00000000000636   4-291,379-436   1e6p A:2-291,A:380-446  
1owqA   3.95e-97   0.0000000000818   1-239,307-358   1ljy A:1-239,A:308-362  
1sytA   1.81e-96   0.0000000000552   1-239,307-358   1ljy A:1-239,A:308-362  
1ta3A   2.62e-80   0.000000000035   4-273   1om0 A:  
1ur9A   1.47e-87   0.00000000000636   4-291,379-436   1e6p A:2-291,A:380-446  
1vf8A   6.34e-95   0.0000000000355   1-246,316-367   1e9l A:22-266,A:337-393  
1w9pA   1.36e-111   0.0000000000131   39-307,369-431   1w9p A:39-298,A:361-433  
1wb0A   3.68e-110   0.0000000000639   2-250,318-364   1lg2 A:22-266,A:335-386  
1wnoA   1.02e-111   0.0000000000134   1-269,331-393   1w9p A:39-298,A:361-433  
1x6lA   3.39e-98   0.000000000004   135-444,517-560   1edq A:133-443,A:517-563  
1xrvA   4.52e-96   0.0000000000735   1-239,307-358   1ljy A:1-239,A:308-362  
2dpeA   8.25e-96   0.0000000000651   1-239,307-358   1ljy A:1-239,A:308-362  
2dt1A   1.81e-96   0.0000000000552   1-239,307-358   1ljy A:1-239,A:308-362  
2ebnA   3.9e-67   0.0000000000671   6-287   2ebn A:  
2escA   2.15e-96   0.0000000000803   1-239,307-358   1ljy A:1-239,A:308-362  
2hvmA   5.79e-99   0.0000000000915   2-269   2hvm A:  
2o9oA   1.92e-95   0.0000000000893   1-239,307-358   1ljy A:1-239,A:308-362  
2pi6A   1.81e-95   0.0000000000664   1-239,307-358   1ljy A:1-239,A:308-362  

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Select to display   Genome       Domains   Proteins
No Yes ALL   62802 62802
No Yes Homo sapiens 76_38 Human 28 28
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 4 4
No Yes Gorilla gorilla 76_3.1 Western gorilla 8 8
No Yes Pongo abelii 76_2 Sumatran orangutan 6 6
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 5 5
No Yes Papio anubis 76 Olive baboon 8 8
No Yes Macaca mulatta 76_1 Rhesus monkey 14 14
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 12 12
No Yes Otolemur garnettii 76_3 Small-eared galago 7 7
No Yes Microcebus murinus 76_1 Gray mouse lemur 4 4
No Yes Rattus norvegicus 76_5.0 Norway rat 6 6
No Yes Mus musculus 76_38 House mouse 17 17
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 5 5
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 5 5
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 2 2
No Yes Cavia porcellus 76_3 Domestic guinea pig 3 3
No Yes Oryctolagus cuniculus 76_2 Rabbit 4 4
No Yes Ochotona princeps 76 American pika 4 4
No Yes Tupaia belangeri 76 Northern tree shrew 5 5
No Yes Sus scrofa 76_10.2 Pig 7 7
No Yes Bos taurus 76_3.1 Cattle 7 7
No Yes Ovis aries 76_3.1 Sheep 9 9
No Yes Vicugna pacos 76_1 Alpaca 4 3
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 5 5
No Yes Mustela putorius furo 76_1.0 Domestic ferret 4 4
No Yes Ailuropoda melanoleuca 76_1 Giant panda 4 4
No Yes Canis familiaris 76_3.1 Dog 3 3
No Yes Felis catus 76_6.2 Domestic cat 5 4
No Yes Equus caballus 76_2 Horse 5 4
No Yes Myotis lucifugus 76_2.0 Little brown bat 5 5
No Yes Pteropus vampyrus 76_1 Large flying fox 1 1
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 4 4
No Yes Procavia capensis 76_1 Cape rock hyrax 3 3
No Yes Loxodonta africana 76_3 African savanna elephant 5 5
No Yes Echinops telfairi 76 Small Madagascar hedgehog 6 6
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 7 5
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 6 5
No Yes Macropus eugenii 76_1.0 Tammar wallaby 5 4
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 9 9
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 9 9
No Yes Ornithorhynchus anatinus 76_5 Platypus 5 5
No Yes Saccoglossus kowalevskii v3.0   3 3
No Yes Meleagris gallopavo 76_2 Turkey 2 2
No Yes Gallus gallus 76_4 Chicken 2 2
No Yes Anas platyrhynchos 76_1.0 Mallard 4 4
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 2 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 5 5
No Yes Anolis carolinensis 76_2.0 Green anole 9 9
No Yes Xenopus laevis African clawed frog 3 3
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 4 4
No Yes Latimeria chalumnae 76_1 Coelacanth 7 5
No Yes Lepisosteus oculatus 76 Spotted gar 7 6
No Yes Gadus morhua 76_1 Atlantic cod 7 7
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 6 6
No Yes Takifugu rubripes 76_4 Torafugu 8 8
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 12 12
No Yes Oryzias latipes 76_1 Japanese medaka 7 7
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 3 3
No Yes Poecilia formosa 76 Amazon molly 2 2
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 8 8
No Yes Astyanax mexicanus 76 Mexican tetra 4 4
No Yes Danio rerio 76_9 Zebrafish 8 8
No Yes Oikopleura dioica   5 5
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 76 Vase tunicate 1 1
No Yes Adineta vaga   42 40
No Yes Octopus bimaculoides 280   24 24
No Yes Crassostrea gigas 22 Pacific oyster 18 16
No Yes Lottia gigantea Owl limpet 25 23
No Yes Helobdella robusta   4 3
No Yes Capitella sp. I   9 9
No Yes Danaus plexippus OGS1.0 Monarch butterfly 18 13
No Yes Heliconius melpomene Postman butterfly 14 11
No Yes Bombyx mori Domestic silkworm 12 10
No Yes Nasonia vitripennis Jewel wasp 11 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 49 38
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 13 9
No Yes Linepithema humile v1.1 Argentine ant 12 8
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 12 8
No Yes Solenopsis invicta v.2.2.3 Red fire ant 11 7
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 10 7
No Yes Atta cephalotes v1.1   12 8
No Yes Camponotus floridanus v3.3 Florida carpenter ant 13 9
No Yes Lucilia cuprina Australian sheep blowfly 25 14
No Yes Drosophila grimshawi 1.3   19 17
No Yes Drosophila willistoni 1.3   19 15
No Yes Drosophila pseudoobscura 2.13   19 15
No Yes Drosophila persimilis 1.3   15 14
No Yes Drosophila suzukii   20 14
No Yes Drosophila yakuba 1.3   20 15
No Yes Drosophila simulans 1.3   14 12
No Yes Drosophila sechellia 1.3   17 15
No Yes Drosophila melanogaster 76_5 Fruit fly 40 30
No Yes Drosophila erecta 1.3   19 15
No Yes Drosophila ananassae 1.3   20 16
No Yes Drosophila virilis 1.2   17 15
No Yes Drosophila mojavensis 1.3   19 15
No Yes Megaselia scalaris 22   6 3
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 25 20
No Yes Culex pipiens quinquefasciatus Southern house mosquito 24 19
No Yes Anopheles darlingi 22 American malaria mosquito 23 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 23 15
No Yes Tribolium castaneum 3.0 Red flour beetle 26 20
No Yes Pediculus humanus corporis (Early assembly) Human body louse 12 7
No Yes Acyrthosiphon pisum Pea aphid 10 7
No Yes Rhodnius prolixus 22   15 9
No Yes Daphnia pulex Common water flea 26 22
No Yes Strigamia maritima 22   13 12
No Yes Sarcoptes scabiei   6 5
No Yes Tetranychus urticae Two-spotted spider mite 15 14
No Yes Ixodes scapularis (Preliminary) Black-legged tick 15 14
No Yes Pristionchus pacificus   7 7
No Yes Meloidogyne incognita Southern root-knot nematode 2 2
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   4 4
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 7 7
No Yes Caenorhabditis japonica   4 4
No Yes Caenorhabditis brenneri   4 4
No Yes Caenorhabditis remanei   3 3
No Yes Caenorhabditis elegans 76_235 Roundworm 3 3
No Yes Caenorhabditis briggsae 2   3 3
No Yes Trichinella spiralis 22   4 3
No Yes Mnemiopsis leidyi Sea walnut 3 3
No Yes Acropora digitifera v1.0   2 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 7 7
No Yes Hydra vulgaris   15 13
No Yes Amphimedon queenslandica   1 1
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   1 1
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Conidiobolus coronatus NRRL28638 v1.0   15 15
No Yes Mortierella verticillata NRRL 6337   9 9
No Yes Phycomyces blakesleeanus   6 6
No Yes Rhizopus oryzae RA 99-880   7 7
No Yes Mucor circinelloides   8 8
No Yes Rhizomucor miehei CAU432   8 8
No Yes Malassezia globosa CBS 7966   2 2
No Yes Sporisorium reilianum 22   1 1
No Yes Ustilago maydis   1 1
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   4 4
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   2 2
No Yes Melampsora laricis-populina   4 4
No Yes Rhodotorula graminis WP1 v1.0   2 2
No Yes Sporobolomyces roseus IAM 13481   3 3
No Yes Microbotryum violaceum 22   3 3
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   6 6
No Yes Piloderma croceum F 1598 v1.0   3 3
No Yes Serpula lacrymans var. lacrymans S7.9   5 5
No Yes Coniophora puteana   7 7
No Yes Hydnomerulius pinastri v2.0   9 9
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   3 3
No Yes Pisolithus microcarpus 441 v1.0   4 4
No Yes Pisolithus tinctorius Marx 270 v1.0   4 4
No Yes Scleroderma citrinum Foug A v1.0   6 6
No Yes Coprinopsis cinerea okayama7 130 v3   6 6
No Yes Pleurotus ostreatus Oyster mushroom 8 8
No Yes Amanita thiersii Skay4041 v1.0   11 11
No Yes Amanita muscaria Koide v1.0 Fly agaric 10 10
No Yes Galerina marginata v1.0   7 7
No Yes Hebeloma cylindrosporum h7 v2.0   5 5
No Yes Laccaria bicolor S238N-H82   3 3
No Yes Agaricus bisporus var. bisporus   7 7
No Yes Schizophyllum commune   8 8
No Yes Stereum hirsutum FP-91666 SS1 v1.0   7 7
No Yes Heterobasidion annosum   7 7
No Yes Gloeophyllum trabeumv1.0   5 5
No Yes Punctularia strigosozonata v1.0   4 4
No Yes Sebacina vermifera MAFF 305830 v1.0   3 3
No Yes Fomitiporia mediterranea v1.0   8 8
No Yes Tulasnella calospora AL13/4D v1.0   2 2
No Yes Postia placenta   11 11
No Yes Wolfiporia cocos MD-104 SS10 v1.0   5 5
No Yes Fomitopsis pinicolav1.0   6 6
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   5 5
No Yes Phanerochaete chrysosporium RP-78 2.1   7 7
No Yes Dichomitus squalens   9 9
No Yes Trametes versicolor v1.0   9 9
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   11 11
No Yes Apiospora montagnei NRRL 25634 v1.0   8 8
No Yes Magnaporthe poae ATCC 64411 22   6 6
No Yes Magnaporthe grisea 70-15   8 8
No Yes Podospora anserina   6 6
No Yes Sporotrichum thermophile ATCC 42464   3 3
No Yes Thielavia terrestris NRRL 8126   7 7
No Yes Chaetomium globosum CBS 148.51   8 8
No Yes Neurospora tetrasperma   5 5
No Yes Neurospora discreta FGSC 8579   6 6
No Yes Neurospora crassa OR74A   6 6
No Yes Cryphonectria parasitica Chestnut blight fungus 6 6
No Yes Verticillium albo-atrum VaMs.102   6 6
No Yes Verticillium dahliae VdLs.17   12 12
No Yes Acremonium alcalophilumv 1.0   10 10
No Yes Glomerella graminicola 22   10 10
No Yes Fusarium graminearum   7 7
No Yes Nectria haematococca mpVI   12 12
No Yes Fusarium oxysporum f. sp. lycopersici 4286   14 14
No Yes Fusarium verticillioides 7600   10 10
No Yes Trichoderma asperellum CBS 433.97 v1.0   18 18
No Yes Trichoderma atroviride   20 20
No Yes Trichoderma citrinoviride v1.0   10 10
No Yes Trichoderma reesei 1.2   10 10
No Yes Trichoderma virens Gv29-8   16 16
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   11 11
No Yes Trichoderma harzianum CBS 226.95 v1.0   16 16
No Yes Amorphotheca resinae v1.0 Creosote fungus 8 8
No Yes Botrytis cinerea B05.10   5 5
No Yes Sclerotinia sclerotiorum   9 9
No Yes Blumeria graminis 22   3 3
No Yes Didymella exigua CBS 183.55 v1.0   8 8
No Yes Leptosphaeria maculans 22   7 7
No Yes Setosphaeria turcica v1.0   6 6
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   9 9
No Yes Cochliobolus victoriae FI3 v1.0   9 9
No Yes Cochliobolus carbonum 26-R-13 v1.0   8 8
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 10 10
No Yes Alternaria brassicicola   4 4
No Yes Cochliobolus lunatus m118 v2.0   7 7
No Yes Pyrenophora teres f. teres 22   6 6
No Yes Pyrenophora tritici-repentis   6 6
No Yes Stagonospora nodorum   7 7
No Yes Mycosphaerella graminicola IPO323   7 7
No Yes Zasmidium cellare ATCC 36951 v1.0   8 8
No Yes Dothistroma septosporum   5 5
No Yes Septoria musiva v1.0   4 4
No Yes Mycosphaerella fijiensis CIRAD86   6 6
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   5 5
No Yes Paracoccidioides brasiliensis Pb18   2 2
No Yes Coccidioides posadasii RMSCC 3488   8 8
No Yes Coccidioides immitis RS   7 7
No Yes Ajellomyces dermatitidis SLH14081   4 4
No Yes Histoplasma capsulatum class NAmI strain WU24   4 4
No Yes Microsporum canis CBS 113480   7 7
No Yes Trichophyton equinum CBS 127.97   5 5
No Yes Trichophyton verrucosum HKI 0517   7 7
No Yes Arthroderma benhamiae CBS 112371   5 5
No Yes Trichophyton tonsurans CBS 112818   7 7
No Yes Trichophyton rubrum CBS 118892   8 8
No Yes Uncinocarpus reesii 1704   7 7
No Yes Aspergillus zonatus v1.0   7 7
No Yes Penicillium chrysogenum Wisconsin 54-1255   5 5
No Yes Penicillium chrysogenum v1.0   7 7
No Yes Aspergillus acidus v1.0   8 8
No Yes Aspergillus fumigatus Af293   9 9
No Yes Aspergillus brasiliensis v1.0   11 11
No Yes Aspergillus nidulans FGSC A4   9 9
No Yes Aspergillus sydowii v1.0   10 10
No Yes Aspergillus versicolor v1.0   6 6
No Yes Aspergillus glaucus   9 9
No Yes Aspergillus carbonarius ITEM 5010   8 8
No Yes Neosartorya fischeri NRRL 181   13 13
No Yes Aspergillus terreus NIH2624   13 13
No Yes Aspergillus tubingensis v1.0   8 8
No Yes Aspergillus wentii v1.0   6 6
No Yes Aspergillus oryzae RIB40   8 8
No Yes Aspergillus niger 22   7 7
No Yes Aspergillus niger ATCC 1015   5 5
No Yes Aspergillus flavus NRRL3357   9 9
No Yes Aspergillus clavatus NRRL 1   11 11
No Yes Penicillium marneffei ATCC 18224   15 15
No Yes Tuber melanosporum Mel28 22   4 4
No Yes Tuber melanosporum Vittad Perigord truffle 4 4
No Yes Hansenula polymorpha v2.0   2 2
No Yes Dekkera bruxellensis CBS 2499 v2.0   2 2
No Yes Pichia membranifaciensv1.0   3 3
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   2 2
No Yes Candida dubliniensis CD36   4 4
No Yes Candida tropicalis MYA-3404   4 4
No Yes Candida parapsilosis   5 5
No Yes Candida albicans SC5314   4 4
No Yes Lodderomyces elongisporus NRRL YB-4239   3 3
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   2 2
No Yes Pichia stipitis CBS 6054   4 4
No Yes Candida guilliermondii ATCC 6260   2 2
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   3 3
No Yes Debaromyces hansenii   3 3
No Yes Wickerhamomyces anomalus   4 4
No Yes Pichia pastoris GS115   1 1
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   2 2
No Yes Yarrowia lipolytica CLIB122   3 3
No Yes Candida lusitaniae ATCC 42720   2 2
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   1 1
No Yes Vanderwaltozyma polyspora DSM 70294   1 1
No Yes Candida glabrata CBS138   2 2
No Yes Kluyveromyces thermotolerans CBS 6340   2 2
No Yes Lachancea kluyveri   4 4
No Yes Kluyveromyces waltii   2 2
No Yes Ashbya gossypii ATCC 10895   1 1
No Yes Zygosaccharomyces rouxii   2 2
No Yes Saccharomyces mikatae MIT   2 2
No Yes Saccharomyces paradoxus MIT   2 2
No Yes Saccharomyces cerevisiae 76 Baker's yeast 2 2
No Yes Saccharomyces bayanus MIT   2 2
No Yes Kluyveromyces lactis   2 2
No Yes Schizosaccharomyces cryophilus OY26 22   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Schizosaccharomyces pombe Fission yeast 1 1
No Yes Catenaria anguillulae PL171 v1.0   7 7
No Yes Allomyces macrogynus ATCC 38327   4 4
No Yes Spizellomyces punctatus DAOM BR117   4 4
No Yes Entamoeba dispar 1.2   1 1
No Yes Entamoeba invadens 1.2   5 5
No Yes Entamoeba histolytica 1   1 1
No Yes Selaginella moellendorffii   25 24
No Yes Pinus taeda Loblolly pine 8 8
No Yes Picea abies Norway spruce 4 4
No Yes Eucalyptus grandis v201 Rose gum 29 29
No Yes Theobroma cacao B97-61/B2 v1 Cacao 24 24
No Yes Gossypium raimondii v221   29 29
No Yes Citrus clementina v165   9 9
No Yes Citrus sinensis v154 Sweet orange 12 12
No Yes Thellungiella halophila v173   2 2
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 5 5
No Yes Capsella rubella v183   5 5
No Yes Arabidopsis lyrata Lyrate rockcress 4 4
No Yes Arabidopsis thaliana 10 Thale cress 8 8
No Yes Carica papaya Papaya 14 14
No Yes Medicago truncatula Barrel medic 43 43
No Yes Phaseolus vulgaris v186 French bean 15 15
No Yes Glycine max v109 Soybean 30 30
No Yes Cucumis sativus v122 Cucumber 12 12
No Yes Fragaria vesca Wild strawberry 17 16
No Yes Malus domestica v196 Apple 34 34
No Yes Prunus persica v139 Peach 19 19
No Yes Linum usitatissimum v200 Flax 22 21
No Yes Manihot esculenta v147 Cassava 19 19
No Yes Populus trichocarpa v156 Black cottonwood 22 22
No Yes Vitis vinifera Wine grape 16 15
No Yes Mimulus guttatus v140 Spotted monkey flower 9 9
No Yes Solanum lycopersicum v.2.3 Tomato 10 10
No Yes Solanum tuberosum Potato 9 9
No Yes Actinidia chinensis Hongyang   15 15
No Yes Aquilegia coerulea v195   13 12
No Yes Triticum urartu 22   20 20
No Yes Triticum aestivum 22 Bread wheat 35 35
No Yes Aegilops tauschii 22   18 17
No Yes Brachypodium distachyon Stiff brome 13 13
No Yes Oryza barthii 22 African wild rice 32 30
No Yes Oryza meridionalis 22   15 15
No Yes Oryza glumaepatula 22   31 29
No Yes Oryza glaberrima African rice 24 24
No Yes Oryza punctata 22   28 23
No Yes Oryza nivara 22   32 31
No Yes Oryza brachyantha 22 Malo sina 20 20
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 31 31
No Yes Oryza sativa v193 Rice 31 31
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 7 7
No Yes Panicum virgatum v202 Switchgrass 37 37
No Yes Setaria italica v164 Foxtail millet 18 18
No Yes Zea mays subsp. mays Maize 13 13
No Yes Zea mays v181 Maize 14 14
No Yes Sorghum bicolor Sorghum 21 21
No Yes Musa balbisiana Balbis banana 11 11
No Yes Musa acuminata 22 Wild Malaysian banana 8 8
No Yes Amborella trichopoda 22   11 11
No Yes Physcomitrella patens   3 3
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Phytophthora capsici   1 1
No Yes Thalassiosira pseudonana CCMP1335   15 15
No Yes Symbiodinium minutum clade B1 v1.2   1 1
No Yes Emiliania huxleyi CCMP1516   8 8
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Acidothermus cellulolyticus 11B   2 2
No Yes Catenulispora acidiphila DSM 44928   4 4
No Yes Stackebrandtia nassauensis DSM 44728   3 3
No Yes Thermobifida fusca YX   2 2
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   3 3
No Yes Streptosporangium roseum DSM 43021   7 7
No Yes Kitasatospora setae KM-6054   8 8
No Yes Streptomyces coelicolor A3(2)   5 5
No Yes Streptomyces sp. PAMC26508   3 3
No Yes Streptomyces flavogriseus ATCC 33331   3 3
No Yes Streptomyces sp. SirexAA-E   3 3
No Yes Streptomyces griseus subsp. griseus NBRC 13350   4 4
No Yes Streptomyces bingchenggensis BCW-1   2 2
No Yes Streptomyces violaceusniger Tu 4113   2 2
No Yes Streptomyces avermitilis MA-4680   2 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces scabiei 87.22   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   2 2
No Yes Actinosynnema mirum DSM 43827   2 2
No Yes Saccharopolyspora erythraea NRRL 2338   2 2
No Yes Amycolatopsis mediterranei U32   5 5
No Yes Kribbella flavida DSM 17836   3 3
No Yes Propionibacterium acnes SK137   1 1
No Yes Salinispora arenicola CNS-205   1 1
No Yes Salinispora tropica CNB-440   1 1
No Yes Verrucosispora maris AB-18-032   1 1
No Yes Micromonospora sp. L5   2 2
No Yes Micromonospora aurantiaca ATCC 27029   2 2
No Yes Actinoplanes sp. N902-109   4 4
No Yes Actinoplanes sp. SE50/110   4 4
No Yes Actinoplanes missouriensis 431   4 4
No Yes Sanguibacter keddieii DSM 10542   1 1
No Yes Jonesia denitrificans DSM 20603   1 1
No Yes Brachybacterium faecium DSM 4810   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes [Cellvibrio] gilvus ATCC 13127   1 1
No Yes Renibacterium salmoninarum ATCC 33209   1 1
No Yes Herpetosiphon aurantiacus DSM 785   2 2
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Clostridium clariflavum DSM 19732   1 1
No Yes Clostridium cellulolyticum H10   1 1
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes Clostridium difficile 630   1 1
No Yes Clostridium saccharolyticum WM1   1 1
No Yes Clostridium phytofermentans ISDg   2 2
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes Clostridium sp. BNL1100   1 1
No Yes Clostridium beijerinckii NCIMB 8052   2 2
No Yes Clostridium botulinum A str. ATCC 3502   2 2
No Yes Thermoanaerobacterium thermosaccharolyticum DSM 571   1 1
No Yes Enterococcus sp. 7L76   1 1
No Yes Enterococcus faecalis 62   1 1
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Paenibacillus sp. JDR-2   2 2
No Yes Listeria welshimeri serovar 6b str. SLCC5334   1 1
No Yes Listeria innocua Clip11262   1 1
No Yes Listeria seeligeri serovar 1/2b str. SLCC3954   1 1
No Yes Listeria monocytogenes serotype 4b str. CLIP 80459   1 1
No Yes Listeria ivanovii subsp. ivanovii PAM 55   1 1
No Yes Oceanobacillus iheyensis HTE831   1 1
No Yes Bacillus sp. 1NLA3E   1 1
No Yes Bacillus atrophaeus 1942   2 2
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Bacillus halodurans C-125   1 1
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Bacillus clausii KSM-K16   1 1
No Yes Bacillus cellulosilyticus DSM 2522   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Salinibacter ruber M8   1 1
No Yes Rhodothermus marinus DSM 4252   1 1
No Yes Fibrella aestuarina   3 3
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Spirosoma linguale DSM 74   2 2
No Yes Bacteroides sp. CF50   1 1
No Yes Prevotella melaninogenica ATCC 25845   1 1
No Yes Prevotella denticola F0289   1 1
No Yes Prevotella ruminicola 23   1 1
No Yes Alistipes finegoldii DSM 17242   2 2
No Yes Bacteroides salanitronis DSM 18170   1 1
No Yes Bacteroides helcogenes P 36-108   1 1
No Yes Bacteroides vulgatus ATCC 8482   1 1
No Yes Bacteroides thetaiotaomicron VPI-5482   2 2
No Yes Pedobacter saltans DSM 12145   1 1
No Yes Solitalea canadensis DSM 3403   1 1
No Yes Sphingobacterium sp. 21   1 1
No Yes Maribacter sp. HTCC2170   1 1
No Yes Ornithobacterium rhinotracheale DSM 15997   1 1
No Yes Flavobacterium johnsoniae UW101   2 2
No Yes Opitutus terrae PB90-1   1 1
No Yes Treponema brennaborense DSM 12168   1 1
No Yes Spirochaeta thermophila DSM 6192   1 1
No Yes Dictyoglomus turgidum DSM 6724   1 1
No Yes Dictyoglomus thermophilum H-6-12   1 1
No Yes Granulicella mallensis MP5ACTX8   2 2
No Yes Terriglobus saanensis SP1PR4   3 3
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Acidobacterium capsulatum ATCC 51196   2 2
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Stigmatella aurantiaca DW4/3-1   2 2
No Yes Corallococcus coralloides DSM 2259   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Chromobacterium violaceum ATCC 12472   2 2
No Yes Burkholderia xenovorans LB400   1 1
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Collimonas fungivorans Ter331   1 1
No Yes Saccharophagus degradans 2-40   4 3
No Yes Teredinibacter turnerae T7901   1 1
No Yes Cellvibrio japonicus Ueda107   3 3
No Yes Aeromonas veronii B565   3 3
No Yes Aeromonas salmonicida subsp. salmonicida A449   1 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   2 2
No Yes Vibrio fischeri MJ11   2 2
No Yes Vibrio sp. Ex25   2 2
No Yes Vibrio harveyi ATCC BAA-1116   3 3
No Yes Vibrio parahaemolyticus RIMD 2210633   3 3
No Yes Vibrio splendidus LGP32   2 2
No Yes Vibrio anguillarum 775   3 3
No Yes Vibrio furnissii NCTC 11218   2 2
No Yes Vibrio vulnificus MO6-24/O   3 3
No Yes Vibrio cholerae O395   3 3
No Yes Ferrimonas balearica DSM 9799   1 1
No Yes Shewanella piezotolerans WP3   1 1
No Yes Shewanella denitrificans OS217   2 2
No Yes Shewanella baltica OS185   2 2
No Yes Shewanella woodyi ATCC 51908   2 2
No Yes Shewanella sp. MR-4   1 1
No Yes Shewanella violacea DSS12   2 2
No Yes Pseudoalteromonas sp. SM9913   2 2
No Yes Hahella chejuensis KCTC 2396   3 3
No Yes Stenotrophomonas maltophilia K279a   2 2
No Yes Xanthomonas albilineans GPE PC73   1 1
No Yes Photorhabdus asymbiotica   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   1 1
No Yes Xenorhabdus bovienii SS-2004   1 1
No Yes Xenorhabdus nematophila ATCC 19061   1 1
No Yes Providencia stuartii MRSN 2154   1 1
No Yes Rahnella sp. Y9602   2 2
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   2 2
No Yes Serratia sp. AS12   3 3
No Yes Serratia plymuthica AS9   3 3
No Yes Serratia proteamaculans 568   3 3
No Yes Pantoea sp. At-9b   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Klebsiella variicola At-22   1 1
No Yes Klebsiella pneumoniae NTUH-K2044   1 1
No Yes Enterobacter aerogenes KCTC 2190   1 1
No Yes Enterobacter asburiae LF7a   2 2
No Yes Enterobacter cloacae subsp. dissolvens SDM   2 2
No Yes Citrobacter rodentium ICC168   6 6
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Francisella philomiragia subsp. philomiragia ATCC 25017   1 1
No Yes Francisella cf. novicida 3523   1 1
No Yes Francisella novicida U112   1 1
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Pyrococcus furiosus COM1   1 1
No Yes Salinarchaeum sp. Harcht-Bsk1   3 3
No Yes Haloterrigena turkmenica DSM 5511   1 1
No Yes Natrinema sp. J7-2   1 1
No Yes Halogeometricum borinquense DSM 11551   2 2
No Yes Haloferax mediterranei ATCC 33500   2 2
No Yes Halomicrobium mukohataei DSM 12286   2 2
No Yes Halobacterium salinarum R1   2 2
No Yes Halobacterium sp. NRC-1   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 10 10
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 23 19
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 25 20
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 3 3
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   3 3
No Yes Paracoccidioides brasiliensis Pb03   2 2
No Yes Coccidioides posadasii str. Silveira   7 7
No Yes Coccidioides immitis RMSCC 3703   5 5
No Yes Coccidioides immitis RMSCC 2394   7 7
No Yes Coccidioides immitis H538.4   6 6
No Yes Ajellomyces dermatitidis ER-3   4 4
No Yes Histoplasma capsulatum H143   3 3
No Yes Histoplasma capsulatum H88   4 4
No Yes Histoplasma capsulatum G186AR   5 5
No Yes Aspergillus fumigatus A1163   8 8
No Yes Candida albicans WO-1   3 3
No Yes Saccharomyces cerevisiae UC5   2 2
No Yes Saccharomyces cerevisiae PW5   2 2
No Yes Saccharomyces cerevisiae CLIB324   1 1
No Yes Saccharomyces cerevisiae CBS7960   2 2
No Yes Saccharomyces cerevisiae YJM269   1 1
No Yes Saccharomyces cerevisiae T7   2 2
No Yes Saccharomyces cerevisiae FostersB   2 2
No Yes Saccharomyces cerevisiae FostersO   2 2
No Yes Saccharomyces cerevisiae VL3   2 2
No Yes Saccharomyces cerevisiae Vin13   1 1
No Yes Saccharomyces cerevisiae LalvinQA23   2 2
No Yes Saccharomyces cerevisiae AWRI796   2 2
No Yes Saccharomyces cerevisiae Sigma1278b   2 2
No Yes Saccharomyces cerevisiae W303   2 2
No Yes Saccharomyces cerevisiae JAY291   2 2
No Yes Saccharomyces cerevisiae AWRI1631   2 2
No Yes Saccharomyces cerevisiae YPS163   2 2
No Yes Saccharomyces cerevisiae CLIB215   2 2
No Yes Saccharomyces cerevisiae YJM789   2 2
No Yes Saccharomyces cerevisiae YJM789   2 2
No Yes Saccharomyces cerevisiae RM11-1a   2 2
No Yes Saccharomyces cerevisiae RM11-1a   2 2
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 2 2
No Yes Schizosaccharomyces pombe 972h-   1 1
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 25 23
No Yes Hordeum vulgare 22 Domesticated barley 9 9
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 31 31
No Yes Synechococcus sp. RCC307   1 1
No Yes Synechococcus sp. WH 7803   1 1
No Yes Prochlorococcus marinus str. MIT 9303   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   3 3
No Yes Streptomyces albus J1074   3 3
No Yes Streptomyces rapamycinicus NRRL 5491   2 2
No Yes Streptomyces davawensis JCM 4913   3 3
No Yes Streptomyces fulvissimus DSM 40593   5 5
No Yes Streptomyces venezuelae ATCC 10712   4 4
No Yes Streptomyces collinus Tu 365   2 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   2 2
No Yes Saccharothrix espanaensis DSM 44229   7 7
No Yes Amycolatopsis mediterranei RB   5 5
No Yes Amycolatopsis mediterranei S699   5 5
No Yes Amycolatopsis mediterranei S699   5 5
No Yes Amycolatopsis orientalis HCCB10007   4 4
No Yes Propionibacterium acnes TypeIA2 P.acn31   1 1
No Yes Propionibacterium acnes TypeIA2 P.acn17   1 1
No Yes Propionibacterium acnes TypeIA2 P.acn33   1 1
No Yes Propionibacterium acnes C1   1 1
No Yes Propionibacterium acnes HL096PA1   1 1
No Yes Propionibacterium acnes 6609   1 1
No Yes Propionibacterium acnes 266   1 1
No Yes Propionibacterium acnes KPA171202   1 1
No Yes Actinoplanes friuliensis DSM 7358   3 3
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Deinococcus peraridilitoris DSM 19664   1 1
No Yes Clostridium thermocellum DSM 1313   1 1
No Yes Clostridium difficile BI1   1 1
No Yes Clostridium difficile R20291   1 1
No Yes Clostridium difficile CD196   1 1
No Yes Clostridium saccharobutylicum DSM 13864   1 1
No Yes Clostridium botulinum H04402 065   2 2
No Yes Clostridium botulinum F str. 230613   2 2
No Yes Clostridium botulinum F str. Langeland   2 2
No Yes Clostridium botulinum B1 str. Okra   2 2
No Yes Clostridium botulinum Ba4 str. 657   1 1
No Yes Clostridium botulinum A2 str. Kyoto   2 2
No Yes Clostridium botulinum A3 str. Loch Maree   2 2
No Yes Clostridium botulinum A str. Hall   2 2
No Yes Clostridium botulinum A str. ATCC 19397   2 2
No Yes Carnobacterium maltaromaticum LMA28   1 1
No Yes Enterococcus mundtii QU 25   2 2
No Yes Enterococcus faecalis str. Symbioflor 1   1 1
No Yes Enterococcus faecalis D32   1 1
No Yes Enterococcus faecalis OG1RF   1 1
No Yes Enterococcus faecalis V583   1 1
No Yes Paenibacillus sp. Y412MC10   4 4
No Yes Paenibacillus mucilaginosus KNP414   1 1
No Yes Paenibacillus mucilaginosus K02   1 1
No Yes Listeria monocytogenes EGD sequence   1 1
No Yes Listeria monocytogenes N53-1   1 1
No Yes Listeria monocytogenes La111   1 1
No Yes Listeria monocytogenes serotype 4b str. LL195   1 1
No Yes Listeria monocytogenes 07PF0776   1 1
No Yes Listeria monocytogenes M7   1 1
No Yes Listeria monocytogenes J1-220   1 1
No Yes Listeria monocytogenes J1816   1 1
No Yes Listeria monocytogenes SLCC2376   1 1
No Yes Listeria monocytogenes SLCC5850   1 1
No Yes Listeria monocytogenes ATCC 19117   1 1
No Yes Listeria monocytogenes L312   1 1
No Yes Listeria monocytogenes SLCC2479   1 1
No Yes Listeria monocytogenes SLCC7179   1 1
No Yes Listeria monocytogenes SLCC2540   1 1
No Yes Listeria monocytogenes SLCC2378   1 1
No Yes Listeria monocytogenes serotype 1/2b str. SLCC2755   1 1
No Yes Listeria monocytogenes serotype 1/2c str. SLCC2372   1 1
No Yes Listeria monocytogenes serotype 7 str. SLCC2482   1 1
No Yes Listeria monocytogenes 08-5578   1 1
No Yes Listeria monocytogenes 08-5923   1 1
No Yes Listeria monocytogenes L99   1 1
No Yes Listeria monocytogenes HCC23   1 1
No Yes Listeria monocytogenes 10403S   1 1
No Yes Listeria monocytogenes J0161   1 1
No Yes Listeria monocytogenes Finland 1998   1 1
No Yes Listeria monocytogenes FSL R2-561   1 1
No Yes Listeria monocytogenes serotype 4b str. F2365   1 1
No Yes Listeria monocytogenes EGD-e   1 1
No Yes Bacillus licheniformis 9945A   2 2
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Bacillus cereus subsp. cytotoxis NVH 391-98   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis YBT-1518   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   1 1
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus AH187   1 1
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus NC7401   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Salinibacter ruber DSM 13855   1 1
No Yes Emticicia oligotrophica DSM 17448   1 1
No Yes Prevotella sp. oral taxon 299 str. F0039   1 1
No Yes Alistipes shahii WAL 8301   2 2
No Yes Bacteroides xylanisolvens XB1A   1 1
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Myxococcus stipitatus DSM 14675   2 2
No Yes Burkholderia sp. YI23   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   4 4
No Yes Aeromonas hydrophila ML09-119   2 2
No Yes Vibrio fischeri ES114   2 2
No Yes Vibrio sp. EJY3   2 2
No Yes Vibrio parahaemolyticus BB22OP   3 3
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   2 2
No Yes Vibrio anguillarum Listonella anguillarum M3   3 3
No Yes Vibrio nigripulchritudo VibrioScope   2 2
No Yes Vibrio vulnificus CMCP6   3 3
No Yes Vibrio vulnificus YJ016   4 4
No Yes Vibrio cholerae LMA3984-4   3 3
No Yes Vibrio cholerae M66-2   3 3
No Yes Vibrio cholerae O395   3 3
No Yes Vibrio cholerae IEC224   3 3
No Yes Vibrio cholerae O1 str. 2010EL-1786   3 3
No Yes Vibrio cholerae MJ-1236   3 3
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   3 3
No Yes Shewanella sp. ANA-3   1 1
No Yes Shewanella baltica BA175   2 2
No Yes Shewanella baltica OS678   2 2
No Yes Shewanella baltica OS117   2 2
No Yes Shewanella baltica OS223   2 2
No Yes Shewanella baltica OS195   2 2
No Yes Shewanella baltica OS155   2 2
No Yes Shewanella sp. MR-7   1 1
No Yes Stenotrophomonas maltophilia D457   2 2
No Yes Stenotrophomonas maltophilia JV3   2 2
No Yes Stenotrophomonas maltophilia R551-3   2 2
No Yes Rahnella aquatilis HX2   2 2
No Yes Serratia sp. AS13   3 3
No Yes Serratia plymuthica S13   3 3
No Yes Serratia plymuthica 4Rx13   3 3
No Yes Serratia marcescens WW4   3 3
No Yes Serratia liquefaciens ATCC 27592   3 3
No Yes Raoultella ornithinolytica B6   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Klebsiella pneumoniae JM45   1 1
No Yes Klebsiella pneumoniae CG43   1 1
No Yes Klebsiella pneumoniae KCTC 2242   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   1 1
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Enterobacter cloacae SCF1   1 1
No Yes Enterobacter cloacae EcWSU1   2 2
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   2 2
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   2 2
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   2 2
No Yes Francisella tularensis subsp. mediasiatica FSC147   1 1
No Yes Francisella tularensis subsp. holarctica F92   1 1
No Yes Francisella tularensis subsp. holarctica FTNF002-00   1 1
No Yes Francisella tularensis subsp. holarctica OSU18   1 1
No Yes Francisella tularensis subsp. holarctica LVS   1 1
No Yes Francisella tularensis subsp. holarctica FSC200   1 1
No Yes Francisella tularensis subsp. tularensis TIGB03   1 1
No Yes Francisella tularensis subsp. tularensis TI0902   1 1
No Yes Francisella tularensis subsp. tularensis NE061598   1 1
No Yes Francisella tularensis subsp. tularensis FSC198   1 1
No Yes Francisella tularensis subsp. tularensis SCHU S4   1 1
No Yes Francisella cf. novicida Fx1   1 1
No Yes Pyrococcus furiosus DSM 3638   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 30 30
No Yes Homo sapiens (NCBI version) Human 8 8
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 8 8
No Yes Heliconius numata (Incomplete)   10 8
No Yes Loa loa v3.3 (Request) Eye worm 2 2
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 2 2
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 4 4
No Yes Moniliophthora perniciosa FA553 (Genome survey)   2 2
No Yes Lotus japonicus (Early assembly)   15 15
No Yes Malus x domestica (Duplicate) Apple 34 34
No Yes Ricinus communis (Early assembly) Castor bean 15 15
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   18 18
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 10 10
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 10 10
No Yes Phoenix dactylifera (Early draft) Date palm 2 2
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   3 3
No Yes Homo sapiens 69_37 Human 5 5
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 4 4
No Yes Gorilla gorilla 69_3.1 Western gorilla 5 5
No Yes Pongo abelii 69_2 Sumatran orangutan 6 6
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 5 5
No Yes Macaca mulatta 69_1 Rhesus monkey 6 6
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 6 6
No Yes Otolemur garnettii 69_3 Small-eared galago 6 6
No Yes Microcebus murinus 69_1 Gray mouse lemur 4 4
No Yes Rattus norvegicus 69_3.4 Norway rat 8 8
No Yes Mus musculus 69_38 House mouse 8 8
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 5 5
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 4 4
No Yes Cavia porcellus 69_3 Domestic guinea pig 3 3
No Yes Oryctolagus cuniculus 69_2 Rabbit 4 4
No Yes Ochotona princeps 69 American pika 4 4
No Yes Tupaia belangeri 69 Northern tree shrew 5 5
No Yes Sus scrofa 69_10.2 Pig 6 6
No Yes Bos taurus 69_3.1 Cattle 6 6
No Yes Vicugna pacos 69_1 Alpaca 4 3
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 5 5
No Yes Mustela putorius furo 69_1.0 Domestic ferret 4 4
No Yes Ailuropoda melanoleuca 69_1 Giant panda 4 4
No Yes Canis familiaris 69_3.1 Dog 3 3
No Yes Felis catus 69 Domestic cat 2 2
No Yes Equus caballus 69_2 Horse 5 4
No Yes Myotis lucifugus 69_2.0 Little brown bat 5 5
No Yes Pteropus vampyrus 69_1 Large flying fox 1 1
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Erinaceus europaeus 69 Western European hedgehog 4 4
No Yes Procavia capensis 69_1 Cape rock hyrax 3 3
No Yes Loxodonta africana 69_3 African savanna elephant 5 5
No Yes Echinops telfairi 69 Small Madagascar hedgehog 6 6
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 6 6
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 6 5
No Yes Macropus eugenii 69_1.0 Tammar wallaby 5 4
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 8 8
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 9 9
No Yes Ornithorhynchus anatinus 69_5 Platypus 5 5
No Yes Meleagris gallopavo 69_2 Turkey 1 1
No Yes Gallus gallus 69_2 Chicken 3 3
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 4 4
No Yes Anolis carolinensis 69_2.0 Green anole 7 7
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 3 3
No Yes Latimeria chalumnae 69_1 Coelacanth 5 3
No Yes Gadus morhua 69_1 Atlantic cod 7 7
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 3 3
No Yes Takifugu rubripes 69_4 Torafugu 4 4
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 8 8
No Yes Oryzias latipes 69_1 Japanese medaka 5 5
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 3 3
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 5 5
No Yes Danio rerio 69_9 Zebrafish 5 5
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 1 1
No Yes Drosophila melanogaster 69_5 Fruit fly 19 15
No Yes Caenorhabditis elegans 69_215 Roundworm 3 3
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 2 2
No Yes Arabidopsis thaliana 10 Thale cress 8 8
No Yes 1_050719N (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   3 3
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   2 2
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   3 3
No Yes Combined (meta-genome)   8 8
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   13 13
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   4 4
No Yes Dump bottom (Dump bottom) (meta-genome)   7 7
No Yes Dump top (Dump top) (meta-genome)   7 7
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   7 7
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   14 14
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   13 13
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   7 7
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   32319 31677
No Yes Protozoadb 2010_08 (Protozoadb)   4 4
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   1039 974
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   20252 19427
No Yes Global Ocean Sampling Expedition (GOS)   40 40
No Yes NCBI plasmid sequences (Plasmids)   11 11
No Yes NCBI viral sequences (Viral)   54 54
No Yes PDB chains (SCOP 1.75) (PDB)   56 56
No Yes Protein Data Bank (all PDB sequenc)   394 389
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   939 939
No Yes TargetDB (Targets)   18 18
No Yes UniProt viral sequences (Viral)   59 59

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