NAD(P)-binding Rossmann-fold domains superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		326555	326555
No Yes	Homo sapiens 49_36k (all transcripts)	Human	316	315
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	229	228
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	133	132
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	180	179
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	305	304
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	315	314
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	128	128
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	143	142
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	130	129
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	367	366
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	282	281
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	128	127
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	130	129
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	177	176
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	130	130
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	143	143
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	118	118
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	131	131
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	207	206
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	104	103
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	143	142
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	245	244
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	125	124
No Yes	Equus caballus 49_2 (all transcripts)	Horse	176	174
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	122	122
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	142	141
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	102	102
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	128	127
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	141	140
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	128	127
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	134	133
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	110	110
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	136	135
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	242	241
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	183	183
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	184	183
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	153	151
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	160	159
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	195	190
No Yes	Xenopus laevis	African clawed frog	376	376
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	245	242
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	294	294
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	304	303
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	244	243
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	203	197
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	436	430
No Yes	Branchiostoma floridae 1.0	Florida lancelet	668	647
No Yes	Ciona savignyi 49_2f (all transcripts)		211	206
No Yes	Ciona intestinalis 49_2i (all transcripts)		229	227
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	562	552
No Yes	Helobdella robusta		130	129
No Yes	Capitella sp. I		346	339
No Yes	Bombyx mori	Domestic silkworm	189	182
No Yes	Nasonia vitripennis	Jewel wasp	161	155
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	366	356
No Yes	Drosophila grimshawi 1.3		156	151
No Yes	Drosophila willistoni 1.3		163	158
No Yes	Drosophila pseudoobscura 2.3		156	152
No Yes	Drosophila persimilis 1.3		150	147
No Yes	Drosophila yakuba 1.3		153	151
No Yes	Drosophila simulans 1.3		136	134
No Yes	Drosophila sechellia 1.3		153	149
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	233	230
No Yes	Drosophila erecta 1.3		148	145
No Yes	Drosophila ananassae 1.3		154	151
No Yes	Drosophila virilis 1.2		158	153
No Yes	Drosophila mojavensis 1.3		148	142
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	233	226
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	201	197
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	148	143
No Yes	Tribolium castaneum 3.0	Red flour beetle	201	190
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	115	111
No Yes	Acyrthosiphon pisum	Pea aphid	176	169
No Yes	Daphnia pulex	Common water flea	177	177
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	213	208
No Yes	Lottia gigantea		184	183
No Yes	Pristionchus pacificus		227	221
No Yes	Meloidogyne incognita	Southern root-knot nematode	118	116
No Yes	Meloidogyne hapla		78	77
No Yes	Brugia malayi	Agent of lymphatic filariasis	53	51
No Yes	Caenorhabditis japonica		124	119
No Yes	Caenorhabditis brenneri		159	155
No Yes	Caenorhabditis remanei		183	178
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	232	227
No Yes	Caenorhabditis briggsae 2		163	157
No Yes	Schistosoma mansoni		95	93
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	203	203
No Yes	Hydra magnipapillata		184	184
No Yes	Trichoplax adhaerens		173	169
No Yes	Proterospongia sp. ATCC 50818		137	131
No Yes	Monosiga brevicollis		135	132
No Yes	Capsaspora owczarzaki ATCC 30864		129	129
No Yes	Malassezia globosa CBS 7966		82	79
No Yes	Ustilago maydis		155	153
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		98	96
No Yes	Melampsora laricis-populina		131	129
No Yes	Sporobolomyces roseus IAM 13481		150	148
No Yes	Serpula lacrymans var. lacrymans S7.9		257	252
No Yes	Coprinopsis cinerea okayama7 130		186	182
No Yes	Pleurotus ostreatus	Oyster mushroom	253	252
No Yes	Laccaria bicolor S238N-H82		207	206
No Yes	Agaricus bisporus var. bisporus		178	177
No Yes	Schizophyllum commune		329	327
No Yes	Heterobasidion annosum		218	217
No Yes	Phanerochaete chrysosporium RP-78 2.1		268	265
No Yes	Postia placenta		546	538
No Yes	Tremella mesenterica		149	148
No Yes	Cryptococcus neoformans JEC21		182	181
No Yes	Magnaporthe grisea 70-15		330	308
No Yes	Podospora anserina		303	288
No Yes	Sporotrichum thermophile ATCC 42464		230	221
No Yes	Thielavia terrestris NRRL 8126		294	285
No Yes	Chaetomium globosum CBS 148.51		301	282
No Yes	Neurospora tetrasperma		206	200
No Yes	Neurospora discreta FGSC 8579		204	197
No Yes	Neurospora crassa OR74A		208	202
No Yes	Cryphonectria parasitica	Chestnut blight fungus	433	410
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		734	721
No Yes	Nectria haematococca mpVI		814	799
No Yes	Fusarium verticillioides 7600		564	550
No Yes	Fusarium graminearum		439	428
No Yes	Trichoderma atroviride		506	490
No Yes	Trichoderma reesei 1.2		327	317
No Yes	Trichoderma virens Gv29-8		544	524
No Yes	Verticillium dahliae VdLs.17		343	334
No Yes	Verticillium albo-atrum VaMs.102		309	301
No Yes	Botrytis cinerea B05.10		362	353
No Yes	Sclerotinia sclerotiorum		281	269
No Yes	Alternaria brassicicola		299	292
No Yes	Pyrenophora tritici-repentis		345	329
No Yes	Cochliobolus heterostrophus		372	357
No Yes	Stagonospora nodorum		445	429
No Yes	Mycosphaerella fijiensis CIRAD86		350	342
No Yes	Mycosphaerella graminicola IPO323		353	342
No Yes	Ajellomyces dermatitidis SLH14081		184	181
No Yes	Histoplasma capsulatum class NAmI strain WU24		152	149
No Yes	Microsporum gypseum		207	190
No Yes	Arthroderma benhamiae CBS 112371		181	169
No Yes	Microsporum canis CBS 113480		211	195
No Yes	Trichophyton equinum CBS 127.97		171	164
No Yes	Trichophyton verrucosum HKI 0517		180	168
No Yes	Trichophyton tonsurans CBS 112818		169	162
No Yes	Trichophyton rubrum CBS 118892		186	175
No Yes	Paracoccidioides brasiliensis Pb18		158	153
No Yes	Coccidioides posadasii RMSCC 3488		181	176
No Yes	Coccidioides immitis RS		184	178
No Yes	Uncinocarpus reesii 1704		169	162
No Yes	Aspergillus fumigatus Af293		348	340
No Yes	Neosartorya fischeri NRRL 181		408	397
No Yes	Penicillium chrysogenum Wisconsin 54-1255		433	412
No Yes	Penicillium marneffei ATCC 18224		441	428
No Yes	Aspergillus carbonarius ITEM 5010		514	495
No Yes	Aspergillus terreus NIH2624		438	420
No Yes	Aspergillus oryzae RIB40		542	524
No Yes	Aspergillus niger ATCC 1015		461	442
No Yes	Aspergillus flavus NRRL3357		583	563
No Yes	Aspergillus clavatus NRRL 1		329	312
No Yes	Aspergillus nidulans FGSC A4		435	419
No Yes	Tuber melanosporum Vittad	Perigord truffle	144	142
No Yes	Candida dubliniensis CD36		112	111
No Yes	Candida tropicalis MYA-3404		126	125
No Yes	Candida parapsilosis		123	122
No Yes	Candida albicans SC5314		116	115
No Yes	Yarrowia lipolytica CLIB122		125	124
No Yes	Candida lusitaniae ATCC 42720		104	103
No Yes	Vanderwaltozyma polyspora DSM 70294		81	79
No Yes	Candida glabrata CBS138		73	72
No Yes	Kluyveromyces thermotolerans CBS 6340		91	90
No Yes	Lachancea kluyveri		89	88
No Yes	Kluyveromyces waltii		80	79
No Yes	Lodderomyces elongisporus NRRL YB-4239		102	101
No Yes	Ashbya gossypii ATCC 10895		64	63
No Yes	Debaromyces hansenii		138	137
No Yes	Zygosaccharomyces rouxii		94	91
No Yes	Saccharomyces mikatae MIT		95	94
No Yes	Saccharomyces paradoxus MIT		93	92
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	96	95
No Yes	Saccharomyces bayanus MIT		106	104
No Yes	Candida guilliermondii ATCC 6260		301	282
No Yes	Pichia stipitis CBS 6054		136	135
No Yes	Pichia pastoris GS115		84	83
No Yes	Kluyveromyces lactis		88	86
No Yes	Schizosaccharomyces octosporus yFS286		89	89
No Yes	Schizosaccharomyces japonicus yFS275		77	77
No Yes	Schizosaccharomyces pombe	Fission yeast	89	89
No Yes	Allomyces macrogynus ATCC 38327		217	214
No Yes	Rhizopus oryzae RA 99-880		182	181
No Yes	Phycomyces blakesleeanus		157	156
No Yes	Mucor circinelloides		184	183
No Yes	Encephalitozoon intestinalis		8	8
No Yes	Encephalitozoon cuniculi		8	8
No Yes	Spizellomyces punctatus DAOM BR117		146	143
No Yes	Batrachochytrium dendrobatidis JEL423		74	73
No Yes	Dictyostelium discoideum		256	202
No Yes	Dictyostelium purpureum		289	223
No Yes	Entamoeba dispar		45	45
No Yes	Entamoeba invadens		53	53
No Yes	Entamoeba histolytica 1		57	57
No Yes	Arabidopsis lyrata	Lyrate rockcress	355	349
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	447	440
No Yes	Carica papaya	Papaya	289	284
No Yes	Medicago truncatula	Barrel medic	305	300
No Yes	Glycine max	Soybean	689	672
No Yes	Cucumis sativus	Cucumber	503	493
No Yes	Populus trichocarpa 1.1	Black cottonwood	623	620
No Yes	Vitis vinifera	Wine grape	467	459
No Yes	Brachypodium distachyon		472	460
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	624	616
No Yes	Zea mays subsp. mays	Maize	746	737
No Yes	Sorghum bicolor	Sorghum	447	415
No Yes	Selaginella moellendorffii		552	542
No Yes	Physcomitrella patens subsp. patens		348	344
No Yes	Coccomyxa sp. C-169		233	212
No Yes	Chlorella sp. NC64A		179	168
No Yes	Chlorella vulgaris		232	216
No Yes	Volvox carteri f. nagariensis		179	161
No Yes	Chlamydomonas reinhardtii 4.0		188	171
No Yes	Ostreococcus sp. RCC809		126	126
No Yes	Ostreococcus lucimarinus CCE9901		130	128
No Yes	Ostreococcus tauri		121	120
No Yes	Micromonas sp. RCC299		156	153
No Yes	Micromonas pusilla CCMP1545		150	149
No Yes	Cyanidioschyzon merolae		123	123
No Yes	Giardia lamblia		19	19
No Yes	Trypanosoma cruzi strain CL Brener		144	143
No Yes	Trypanosoma brucei		55	55
No Yes	Leishmania mexicana		82	81
No Yes	Leishmania major strain Friedlin		86	85
No Yes	Leishmania infantum JPCM5		79	79
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		75	74
No Yes	Aureococcus anophagefferens		221	217
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	249	245
No Yes	Phytophthora sojae 1.1		255	248
No Yes	Phytophthora infestans T30-4		257	254
No Yes	Phytophthora capsici		333	326
No Yes	Phaeodactylum tricornutum		210	207
No Yes	Fragilariopsis cylindrus		404	402
No Yes	Thalassiosira pseudonana		204	203
No Yes	Paramecium tetraurelia		150	150
No Yes	Tetrahymena thermophila SB210 1		152	146
No Yes	Babesia bovis T2Bo		12	12
No Yes	Theileria parva		13	13
No Yes	Theileria annulata		13	13
No Yes	Plasmodium falciparum 3D7		27	27
No Yes	Plasmodium vivax SaI-1		28	27
No Yes	Plasmodium knowlesi strain H		28	28
No Yes	Plasmodium yoelii ssp. yoelii 1		28	28
No Yes	Plasmodium chabaudi		39	39
No Yes	Plasmodium berghei ANKA		36	36
No Yes	Cryptosporidium hominis		29	22
No Yes	Cryptosporidium muris		37	24
No Yes	Cryptosporidium parvum Iowa II		33	21
No Yes	Neospora caninum Nc-Liverpool		77	69
No Yes	Neospora caninum		77	66
No Yes	Toxoplasma gondii ME49		74	66
No Yes	Naegleria gruberi		234	233
No Yes	Trichomonas vaginalis		135	135
No Yes	Guillardia theta		2	2
No Yes	Emiliania huxleyi CCMP1516		578	532
No Yes	Candidatus Phytoplasma mali		2	2
No Yes	Aster yellows witches-broom phytoplasma AYWB		3	3
No Yes	Onion yellows phytoplasma OY-M		3	3
No Yes	Acholeplasma laidlawii PG-8A		27	26
No Yes	Mesoplasma florum L1		10	10
No Yes	Ureaplasma parvum ser. 3 ATCC 700970		2	2
No Yes	Ureaplasma urealyticum ser. 10 ATCC 33699		2	2
No Yes	Mycoplasma mycoides ssp. mycoides SC PG1		14	14
No Yes	Mycoplasma capricolum ssp. capricolum ATCC 27343		10	10
No Yes	Mycoplasma crocodyli MP145		9	9
No Yes	Mycoplasma conjunctivae		5	5
No Yes	Mycoplasma penetrans HF-2		14	14
No Yes	Mycoplasma mobile 163K		9	9
No Yes	Mycoplasma arthritidis 158L3-1		6	6
No Yes	Mycoplasma agalactiae PG2		10	10
No Yes	Mycoplasma synoviae 53		6	6
No Yes	Mycoplasma pulmonis UAB CTIP		6	6
No Yes	Mycoplasma pneumoniae M129		7	7
No Yes	Mycoplasma hyopneumoniae 232		7	7
No Yes	Mycoplasma hominis		5	5
No Yes	Mycoplasma genitalium G37		5	5
No Yes	Mycoplasma gallisepticum R		6	6
No Yes	Aminobacterium colombiense DSM 12261		51	49
No Yes	Thermanaerovibrio acidaminovorans DSM 6589		45	43
No Yes	Brachyspira hyodysenteriae WA1		48	47
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis L550		77	76
No Yes	Leptospira interrogans ser. Lai 56601		85	84
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Paris)		88	87
No Yes	Treponema pallidum ssp. pallidum Nichols		14	12
No Yes	Treponema denticola ATCC 35405		30	28
No Yes	Borrelia garinii PBi		8	8
No Yes	Borrelia afzelii PKo		8	8
No Yes	Borrelia burgdorferi B31		8	8
No Yes	Borrelia recurrentis A1		8	8
No Yes	Borrelia duttonii Ly		8	8
No Yes	Borrelia turicatae 91E135		8	8
No Yes	Borrelia hermsii DAH		8	8
No Yes	Rhodopirellula baltica SH 1		162	156
No Yes	Pirellula staleyi DSM 6068		114	114
No Yes	Gardnerella vaginalis 409-05		17	17
No Yes	Bifidobacterium longum NCC2705		40	40
No Yes	Bifidobacterium animalis ssp. lactis AD011		35	35
No Yes	Bifidobacterium dentium Bd1		49	49
No Yes	Bifidobacterium adolescentis ATCC 15703		39	39
No Yes	Kineococcus radiotolerans SRS30216		219	219
No Yes	Catenulispora acidiphila DSM 44928		348	330
No Yes	Stackebrandtia nassauensis DSM 44728		182	180
No Yes	Acidothermus cellulolyticus 11B		79	79
No Yes	Nakamurella multipartita DSM 44233		179	175
No Yes	Geodermatophilus obscurus DSM 43160		195	193
No Yes	Frankia sp. CcI3		135	128
No Yes	Frankia alni ACN14a		298	269
No Yes	Thermobifida fusca YX		98	98
No Yes	Thermomonospora curvata DSM 43183		137	132
No Yes	Streptosporangium roseum DSM 43021		297	293
No Yes	Streptomyces griseus ssp. griseus NBRC 13350		303	245
No Yes	Streptomyces avermitilis MA-4680		359	282
No Yes	Streptomyces scabiei 87.22		304	274
No Yes	Streptomyces coelicolor A3(2)		300	286
No Yes	Actinosynnema mirum DSM 43827		342	275
No Yes	Saccharomonospora viridis DSM 43017		119	119
No Yes	Saccharopolyspora erythraea NRRL 2338		326	286
No Yes	Kribbella flavida DSM 17836		295	293
No Yes	Nocardioides sp. JS614		184	180
No Yes	Propionibacterium acnes KPA171202		69	69
No Yes	Salinispora arenicola CNS-205		219	185
No Yes	Salinispora tropica CNB-440		178	158
No Yes	Gordonia bronchialis DSM 43247		158	156
No Yes	Rhodococcus jostii RHA1		358	353
No Yes	Rhodococcus opacus B4		384	379
No Yes	Rhodococcus erythropolis PR4		270	269
No Yes	Nocardia farcinica IFM 10152		218	213
No Yes	Mycobacterium abscessus		215	203
No Yes	Mycobacterium sp. MCS		306	296
No Yes	Mycobacterium avium ssp. paratuberculosis K-10		259	239
No Yes	Mycobacterium vanbaalenii PYR-1		297	281
No Yes	Mycobacterium tuberculosis H37Rv		165	140
No Yes	Mycobacterium bovis AF2122/97		162	137
No Yes	Mycobacterium ulcerans Agy99		194	177
No Yes	Mycobacterium gilvum PYR-GCK		278	266
No Yes	Mycobacterium marinum M		286	243
No Yes	Mycobacterium smegmatis MC2 155		379	369
No Yes	Mycobacterium leprae TN		66	55
No Yes	Corynebacterium aurimucosum		58	58
No Yes	Corynebacterium kroppenstedtii DSM 44385		50	50
No Yes	Corynebacterium efficiens YS-314		86	85
No Yes	Corynebacterium urealyticum DSM 7109		54	54
No Yes	Corynebacterium jeikeium K411		52	52
No Yes	Corynebacterium glutamicum ATCC 13032 Kitasato		85	84
No Yes	Corynebacterium diphtheriae NCTC 13129		48	48
No Yes	Tropheryma whipplei Twist		18	18
No Yes	Sanguibacter keddieii DSM 10542		131	131
No Yes	Kytococcus sedentarius DSM 20547		83	80
No Yes	Beutenbergia cavernae DSM 12333		167	167
No Yes	Leifsonia xyli ssp. xyli CTCB07		59	59
No Yes	Clavibacter michiganensis ssp. michiganensis NCPPB 382		128	128
No Yes	Jonesia denitrificans DSM 20603		59	59
No Yes	Brachybacterium faecium DSM 4810		130	129
No Yes	Xylanimonas cellulosilytica DSM 15894		86	86
No Yes	Kocuria rhizophila DC2201		89	88
No Yes	Rothia mucilaginosa DY-18		47	46
No Yes	Arthrobacter sp. FB24		196	196
No Yes	Arthrobacter chlorophenolicus A6		169	169
No Yes	Arthrobacter aurescens TC1		178	177
No Yes	Renibacterium salmoninarum ATCC 33209		135	133
No Yes	Micrococcus luteus NCTC 2665		77	77
No Yes	Cryptobacterium curtum DSM 15641		26	25
No Yes	Eggerthella lenta DSM 2243		50	49
No Yes	Slackia heliotrinireducens DSM 20476		48	48
No Yes	Atopobium parvulum DSM 20469		21	21
No Yes	Conexibacter woesei DSM 14684		267	264
No Yes	Rubrobacter xylanophilus DSM 9941		144	142
No Yes	Acidimicrobium ferrooxidans DSM 10331		65	65
No Yes	Denitrovibrio acetiphilus DSM 12809		57	56
No Yes	Deferribacter desulfuricans SSM1		54	53
No Yes	Kosmotoga olearia TBF 19.5.1		40	39
No Yes	Petrotoga mobilis SJ95		51	50
No Yes	Fervidobacterium nodosum Rt17-B1		37	36
No Yes	Thermosipho melanesiensis BI429		42	41
No Yes	Thermosipho africanus TCF52B		44	43
No Yes	Thermotoga lettingae TMO		54	53
No Yes	Thermotoga sp. RQ2		52	51
No Yes	Thermotoga naphthophila RKU-10		50	49
No Yes	Thermotoga petrophila RKU-1		52	51
No Yes	Thermotoga neapolitana DSM 4359		55	54
No Yes	Thermotoga maritima MSB8		53	52
No Yes	Dehalococcoides sp. CBDB1		32	31
No Yes	Dehalococcoides ethenogenes 195		31	30
No Yes	Thermomicrobium roseum DSM 5159		51	51
No Yes	Sphaerobacter thermophilus DSM 20745		99	98
No Yes	Herpetosiphon aurantiacus ATCC 23779		165	135
No Yes	Roseiflexus sp. RS-1		156	148
No Yes	Roseiflexus castenholzii DSM 13941		161	154
No Yes	Chloroflexus sp. Y-400-fl		123	119
No Yes	Chloroflexus aggregans DSM 9485		116	111
No Yes	Chloroflexus aurantiacus J-10-fl		123	119
No Yes	Sulfurihydrogenibium sp. YO3AOP1		43	43
No Yes	Sulfurihydrogenibium azorense Az-Fu1		48	47
No Yes	Persephonella marina EX-H1		54	53
No Yes	Hydrogenobaculum sp. Y04AAS1		43	43
No Yes	Thermocrinis albus DSM 14484		44	44
No Yes	Aquifex aeolicus VF5		45	45
No Yes	Hydrogenobacter thermophilus TK-6		41	41
No Yes	Gemmatimonas aurantiaca T-27		104	104
No Yes	Fibrobacter succinogenes ssp. succinogenes S85		56	56
No Yes	Candidatus Koribacter versatilis Ellin345		128	124
No Yes	Candidatus Solibacter usitatus Ellin6076		245	241
No Yes	Acidobacterium capsulatum ATCC 51196		100	99
No Yes	Elusimicrobium minutum Pei191		31	31
No Yes	uncultured Termite group 1 bacterium phylotype Rs-D17		20	20
No Yes	Pelodictyon phaeoclathratiforme BU-1		74	73
No Yes	Pelodictyon luteolum DSM 273		62	61
No Yes	Chlorobium chlorochromatii CaD3		55	55
No Yes	Chlorobium phaeobacteroides DSM 266		71	70
No Yes	Chlorobium phaeovibrioides DSM 265		60	60
No Yes	Chlorobium limicola DSM 245		67	67
No Yes	Chlorobaculum parvum NCIB 8327		66	66
No Yes	Chlorobium tepidum TLS		63	63
No Yes	Chloroherpeton thalassium ATCC 35110		83	80
No Yes	Prosthecochloris aestuarii DSM 271		68	67
No Yes	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2		24	24
No Yes	Prevotella ruminicola 23		53	52
No Yes	Parabacteroides distasonis ATCC 8503		116	111
No Yes	Porphyromonas gingivalis W83		44	43
No Yes	Bacteroides vulgatus ATCC 8482		82	81
No Yes	Bacteroides thetaiotaomicron VPI-5482		99	98
No Yes	Bacteroides fragilis NCTC 9343		88	85
No Yes	Candidatus Amoebophilus asiaticus 5a2		14	14
No Yes	Salinibacter ruber DSM 13855		104	101
No Yes	Rhodothermus marinus DSM 4252		92	91
No Yes	Chitinophaga pinensis DSM 2588		266	257
No Yes	Dyadobacter fermentans DSM 18053		197	196
No Yes	Cytophaga hutchinsonii ATCC 33406		80	80
No Yes	Spirosoma linguale DSM 74		217	215
No Yes	Pedobacter heparinus DSM 2366		128	127
No Yes	Candidatus Sulcia muelleri GWSS		9	9
No Yes	Zunongwangia profunda SM-A87		131	129
No Yes	Gramella forsetii KT0803		108	106
No Yes	Robiginitalea biformata HTCC2501		100	98
No Yes	Flavobacteriaceae bacterium 3519-10		63	63
No Yes	Capnocytophaga ochracea DSM 7271		46	46
No Yes	Flavobacterium psychrophilum JIP02/86		57	57
No Yes	Flavobacterium johnsoniae UW101		132	132
No Yes	Blattabacterium sp. Bge		18	18
No Yes	Dictyoglomus turgidum DSM 6724		59	58
No Yes	Dictyoglomus thermophilum H-6-12		62	61
No Yes	Candidatus Protochlamydia amoebophila UWE25		37	37
No Yes	Chlamydophila pneumoniae TW-183		14	14
No Yes	Chlamydophila caviae GPIC		15	15
No Yes	Chlamydophila felis Fe/C-56		15	15
No Yes	Chlamydophila abortus S26/3		15	15
No Yes	Chlamydia muridarum Nigg		14	14
No Yes	Chlamydia trachomatis D/UW-3/CX		14	14
No Yes	Coraliomargarita akajimensis DSM 45221		117	115
No Yes	Opitutus terrae PB90-1		131	123
No Yes	Methylacidiphilum infernorum V4		56	56
No Yes	Akkermansia muciniphila ATCC BAA-835		57	57
No Yes	Thermodesulfovibrio yellowstonii DSM 11347		58	56
No Yes	Streptobacillus moniliformis DSM 12112		16	16
No Yes	Sebaldella termitidis ATCC 33386		94	94
No Yes	Leptotrichia buccalis DSM 1135		43	42
No Yes	Fusobacterium nucleatum ssp. nucleatum ATCC 25586		36	34
No Yes	Thermobaculum terrenum ATCC BAA-798		140	140
No Yes	Deinococcus deserti VCD115		72	71
No Yes	Deinococcus geothermalis DSM 11300		69	69
No Yes	Deinococcus radiodurans R1		72	72
No Yes	Meiothermus ruber DSM 1279		90	89
No Yes	Thermus thermophilus HB27 (First sequenced)		62	61
No Yes	Natranaerobius thermophilus JW/NM-WN-LF		58	56
No Yes	Symbiobacterium thermophilum IAM 14863		74	73
No Yes	Anaerococcus prevotii DSM 20548		32	30
No Yes	Finegoldia magna ATCC 29328		22	21
No Yes	Clostridiales genomosp. BVAB3 UPII9-5		25	23
No Yes	Anaerocellum thermophilum DSM 6725		50	50
No Yes	Candidatus Desulforudis audaxviator MP104C		42	41
No Yes	Pelotomaculum thermopropionicum SI		59	58
No Yes	Desulfitobacterium hafniense Y51		86	84
No Yes	Desulfotomaculum reducens MI-1		61	59
No Yes	Desulfotomaculum acetoxidans DSM 771		62	58
No Yes	Eubacterium rectale ATCC 33656		44	42
No Yes	Eubacterium eligens ATCC 27750		42	40
No Yes	Syntrophomonas wolfei ssp. wolfei Goettingen		54	52
No Yes	Heliobacterium modesticaldum Ice1		49	49
No Yes	Alkaliphilus oremlandii OhILAs		37	36
No Yes	Alkaliphilus metalliredigens QYMF		76	74
No Yes	Clostridium phytofermentans ISDg		78	77
No Yes	Clostridium novyi NT		39	38
No Yes	Clostridium kluyveri DSM 555		65	63
No Yes	Clostridium cellulolyticum H10		88	81
No Yes	Clostridium beijerinckii NCIMB 8052		105	104
No Yes	Clostridium thermocellum ATCC 27405		56	53
No Yes	Clostridium tetani E88		44	42
No Yes	Clostridium perfringens 13		43	42
No Yes	Clostridium difficile 630		61	60
No Yes	Clostridium botulinum A ATCC 3502		59	57
No Yes	Clostridium acetobutylicum ATCC 824		69	69
No Yes	Veillonella parvula DSM 2008		39	37
No Yes	Acidaminococcus fermentans DSM 20731		48	47
No Yes	Caldicellulosiruptor saccharolyticus DSM 8903		49	48
No Yes	Coprothermobacter proteolyticus DSM 5265		24	24
No Yes	Carboxydothermus hydrogenoformans Z-2901		42	42
No Yes	Moorella thermoacetica ATCC 39073		44	44
No Yes	Ammonifex degensii KC4		35	35
No Yes	Thermoanaerobacter pseudethanolicus ATCC 33223		54	54
No Yes	Thermoanaerobacter sp. X514		58	58
No Yes	Thermoanaerobacter tengcongensis MB4		57	56
No Yes	Thermoanaerobacter italicus Ab9		61	61
No Yes	Halothermothrix orenii H 168		47	45
No Yes	Enterococcus faecalis V583		65	65
No Yes	Oenococcus oeni PSU-1		62	62
No Yes	Leuconostoc citreum KM20		51	51
No Yes	Leuconostoc mesenteroides ssp. mesenteroides ATCC 8293		60	60
No Yes	Lactobacillus casei ATCC 334		70	70
No Yes	Lactobacillus crispatus ST1		29	29
No Yes	Lactobacillus rhamnosus GG		67	67
No Yes	Lactobacillus johnsonii NCC 533		27	27
No Yes	Lactobacillus salivarius UCC118		48	47
No Yes	Lactobacillus fermentum IFO 3956		60	60
No Yes	Lactobacillus sakei ssp. sakei 23K		52	52
No Yes	Lactobacillus reuteri DSM 20016		48	48
No Yes	Lactobacillus gasseri ATCC 33323		26	26
No Yes	Lactobacillus plantarum WCFS1		114	114
No Yes	Lactobacillus helveticus DPC 4571		25	25
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842		23	23
No Yes	Lactobacillus brevis ATCC 367		56	56
No Yes	Lactobacillus acidophilus NCFM		32	32
No Yes	Pediococcus pentosaceus ATCC 25745		47	47
No Yes	Lactococcus lactis ssp. lactis Il1403		61	61
No Yes	Streptococcus gallolyticus UCN34		53	52
No Yes	Streptococcus equi ssp. zooepidemicus MGCS10565		30	30
No Yes	Streptococcus dysgalactiae ssp. equisimilis GGS_124		33	33
No Yes	Streptococcus mitis B6		34	32
No Yes	Streptococcus uberis 0140J		51	50
No Yes	Streptococcus pyogenes M1 GAS		27	27
No Yes	Streptococcus pneumoniae TIGR4 (Virulent)		41	39
No Yes	Streptococcus agalactiae NEM316		40	39
No Yes	Streptococcus mutans UA159		45	44
No Yes	Streptococcus thermophilus LMG 18311 (Older strain)		37	36
No Yes	Streptococcus suis 05ZYH33		38	38
No Yes	Streptococcus sanguinis SK36		51	49
No Yes	Streptococcus gordonii Challis subCH1		46	44
No Yes	Exiguobacterium sp. AT1b		93	92
No Yes	Exiguobacterium sibiricum 255-15		107	105
No Yes	Bacillus tusciae DSM 2912		96	95
No Yes	Alicyclobacillus acidocaldarius ssp. acidocaldarius DSM 446		94	94
No Yes	Brevibacillus brevis NBRC 100599		148	141
No Yes	Paenibacillus sp. JDR-2		219	218
No Yes	Listeria welshimeri ser. 6b SLCC5334		68	68
No Yes	Listeria innocua Clip11262		73	73
No Yes	Listeria seeligeri ser. 1/2b SLCC3954		71	71
No Yes	Listeria monocytogenes EGD-e		73	73
No Yes	Lysinibacillus sphaericus C3-41		98	98
No Yes	Oceanobacillus iheyensis HTE831		128	127
No Yes	Anoxybacillus flavithermus WK1		66	66
No Yes	Geobacillus sp. WCH70		75	75
No Yes	Geobacillus thermodenitrificans NG80-2		93	93
No Yes	Geobacillus kaustophilus HTA426		96	96
No Yes	Bacillus subtilis ssp. subtilis 168		133	127
No Yes	Bacillus licheniformis ATCC 14580		121	120
No Yes	Bacillus amyloliquefaciens FZB42		153	139
No Yes	Bacillus halodurans C-125		119	118
No Yes	Bacillus weihenstephanensis KBAB4		131	129
No Yes	Bacillus thuringiensis ser. konkukian 97-27		121	121
No Yes	Bacillus cereus ATCC 14579		129	128
No Yes	Bacillus anthracis Ames Ancestor		119	119
No Yes	Bacillus pseudofirmus OF4		107	106
No Yes	Bacillus clausii KSM-K16		138	138
No Yes	Bacillus pumilus SAFR-032		118	115
No Yes	Bacillus megaterium QM B1551		159	159
No Yes	Macrococcus caseolyticus JCSC5402		66	65
No Yes	Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305		83	82
No Yes	Staphylococcus lugdunensis HKU09-01		82	81
No Yes	Staphylococcus haemolyticus JCSC1435		74	73
No Yes	Staphylococcus epidermidis RP62A		64	64
No Yes	Staphylococcus carnosus ssp. carnosus TM300		88	86
No Yes	Staphylococcus aureus ssp. aureus NCTC 8325		75	74
No Yes	Nautilia profundicola AmH		51	50
No Yes	Sulfurospirillum deleyianum DSM 6946		52	49
No Yes	Arcobacter butzleri RM4018		46	45
No Yes	Campylobacter hominis ATCC BAA-381		34	34
No Yes	Campylobacter lari RM2100		34	34
No Yes	Campylobacter curvus 525.92		45	44
No Yes	Campylobacter concisus 13826		38	37
No Yes	Campylobacter jejuni ssp. jejuni NCTC 11168		41	41
No Yes	Campylobacter fetus ssp. fetus 82-40		38	38
No Yes	Sulfurimonas denitrificans DSM 1251		49	49
No Yes	Wolinella succinogenes DSM 1740		40	40
No Yes	Helicobacter hepaticus ATCC 51449		45	45
No Yes	Helicobacter mustelae 12198		36	36
No Yes	Helicobacter acinonychis Sheeba		30	30
No Yes	Helicobacter pylori 26695		31	31
No Yes	Nitratiruptor sp. SB155-2		51	49
No Yes	Sulfurovum sp. NBC37-1		56	54
No Yes	Bdellovibrio bacteriovorus HD100		58	57
No Yes	Syntrophus aciditrophicus SB		74	68
No Yes	Syntrophobacter fumaroxidans MPOB		93	90
No Yes	Desulfotalea psychrophila LSv54		64	61
No Yes	Desulfatibacillum alkenivorans AK-01		134	131
No Yes	Desulfobacterium autotrophicum HRM2		109	106
No Yes	Desulfococcus oleovorans Hxd3		102	98
No Yes	Desulfohalobium retbaense DSM 5692		56	54
No Yes	Desulfomicrobium baculatum DSM 4028		75	72
No Yes	Lawsonia intracellularis PHE/MN1-00		31	30
No Yes	Desulfovibrio magneticus RS-1		64	63
No Yes	Desulfovibrio vulgaris Hildenborough		57	57
No Yes	Desulfovibrio salexigens DSM 2638		70	68
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans G20		65	62
No Yes	Pelobacter propionicus DSM 2379		80	78
No Yes	Pelobacter carbinolicus DSM 2380		71	70
No Yes	Geobacter uraniireducens Rf4		98	91
No Yes	Geobacter sp. FRC-32		93	92
No Yes	Geobacter lovleyi SZ		75	71
No Yes	Geobacter bemidjiensis Bem		103	101
No Yes	Geobacter sulfurreducens PCA		65	64
No Yes	Geobacter metallireducens GS-15		86	85
No Yes	Haliangium ochraceum DSM 14365		214	178
No Yes	Sorangium cellulosum So ce 56		255	213
No Yes	Anaeromyxobacter sp. Fw109-5		130	127
No Yes	Anaeromyxobacter dehalogenans 2CP-C		125	124
No Yes	Myxococcus xanthus DK 1622		205	176
No Yes	Magnetococcus sp. MC-1		79	77
No Yes	Sideroxydans lithotrophicus ES-1		61	59
No Yes	Aromatoleum aromaticum EbN1		109	105
No Yes	Dechloromonas aromatica RCB		88	86
No Yes	Thauera sp. MZ1T		98	95
No Yes	Laribacter hongkongensis HLHK9		71	69
No Yes	Chromobacterium violaceum ATCC 12472		91	90
No Yes	Neisseria meningitidis Z2491		45	43
No Yes	Neisseria gonorrhoeae FA 1090		42	40
No Yes	Methylotenera mobilis JLW8		58	56
No Yes	Methylovorus sp. SIP3-4		62	60
No Yes	Methylobacillus flagellatus KT		66	64
No Yes	Thiobacillus denitrificans ATCC 25259		61	59
No Yes	Candidatus Accumulibacter phosphatis clade IIA UW-1		97	92
No Yes	Methylibium petroleiphilum PM1		103	100
No Yes	Leptothrix cholodnii SP-6		140	138
No Yes	Ralstonia eutropha JMP134		223	222
No Yes	Cupriavidus taiwanensis		159	159
No Yes	Ralstonia metallidurans CH34		181	180
No Yes	Ralstonia pickettii 12J		137	135
No Yes	Ralstonia solanacearum GMI1000		100	98
No Yes	Polynucleobacter necessarius ssp. asymbioticus QLW-P1DMWA-1		65	65
No Yes	Burkholderia phytofirmans PsJN		266	265
No Yes	Burkholderia phymatum STM815		180	179
No Yes	Burkholderia thailandensis E264		195	176
No Yes	Burkholderia pseudomallei K96243		192	179
No Yes	Burkholderia mallei ATCC 23344		158	148
No Yes	Burkholderia sp. 383		295	292
No Yes	Burkholderia ambifaria AMMD		274	261
No Yes	Burkholderia cenocepacia AU 1054		253	249
No Yes	Burkholderia multivorans ATCC 17616		221	216
No Yes	Burkholderia vietnamiensis G4		187	186
No Yes	Burkholderia xenovorans LB400		327	326
No Yes	Burkholderia glumae BGR1		177	172
No Yes	Verminephrobacter eiseniae EF01-2		172	170
No Yes	Delftia acidovorans SPH-1		158	156
No Yes	Polaromonas sp. JS666		167	165
No Yes	Polaromonas naphthalenivorans CJ2		124	122
No Yes	Variovorax paradoxus S110		213	211
No Yes	Rhodoferax ferrireducens T118		135	133
No Yes	Diaphorobacter sp. TPSY		98	97
No Yes	Acidovorax sp. JS42		104	103
No Yes	Acidovorax citrulli AAC00-1		107	105
No Yes	Comamonas sp. CNB-1		135	134
No Yes	Herminiimonas arsenicoxydans		74	73
No Yes	Janthinobacterium sp. Marseille		93	91
No Yes	Bordetella petrii DSM 12804		168	164
No Yes	Bordetella avium 197N		94	92
No Yes	Bordetella pertussis Tohama I		114	112
No Yes	Bordetella parapertussis 12822		145	141
No Yes	Bordetella bronchiseptica RB50		182	178
No Yes	Nitrosospira multiformis ATCC 25196		75	73
No Yes	Nitrosomonas eutropha C91		67	65
No Yes	Nitrosomonas europaea ATCC 19718		62	58
No Yes	Caulobacter sp. K31		181	181
No Yes	Caulobacter crescentus CB15		107	106
No Yes	Caulobacter segnis ATCC 21756		145	145
No Yes	Phenylobacterium zucineum HLK1		120	120
No Yes	Erythrobacter litoralis HTCC2594		97	96
No Yes	Sphingopyxis alaskensis RB2256		112	111
No Yes	Novosphingobium aromaticivorans DSM 12444		121	119
No Yes	Sphingobium japonicum UT26S		144	144
No Yes	Sphingomonas wittichii RW1		220	220
No Yes	Zymomonas mobilis ssp. mobilis ZM4		53	53
No Yes	Maricaulis maris MCS10		85	84
No Yes	Hirschia baltica ATCC 49814		97	96
No Yes	Hyphomonas neptunium ATCC 15444		124	121
No Yes	Dinoroseobacter shibae DFL 12		110	107
No Yes	Jannaschia sp. CCS1		141	140
No Yes	Ruegeria sp. TM1040		87	85
No Yes	Ruegeria pomeroyi DSS-3		142	139
No Yes	Roseobacter denitrificans OCh 114		135	134
No Yes	Rhodobacter sphaeroides 2.4.1		116	114
No Yes	Rhodobacter capsulatus SB1003		81	80
No Yes	Paracoccus denitrificans PD1222		123	120
No Yes	Magnetospirillum magneticum AMB-1		107	104
No Yes	Rhodospirillum centenum SW		104	101
No Yes	Rhodospirillum rubrum ATCC 11170		90	89
No Yes	Azospirillum sp. B510		62	62
No Yes	Granulibacter bethesdensis CGDNIH1		69	69
No Yes	Gluconacetobacter diazotrophicus PAl 5		128	126
No Yes	Gluconobacter oxydans 621H		71	71
No Yes	Acetobacter pasteurianus IFO 3283-01		65	64
No Yes	alpha proteobacterium IMCC1322		93	91
No Yes	Candidatus Pelagibacter ubique HTCC1062		63	62
No Yes	Neorickettsia sennetsu Miyayama		17	17
No Yes	Neorickettsia risticii Illinois		16	16
No Yes	Ehrlichia chaffeensis Arkansas		20	20
No Yes	Ehrlichia canis Jake		20	20
No Yes	Ehrlichia ruminantium Welgevonden		20	20
No Yes	Anaplasma phagocytophilum HZ		16	16
No Yes	Anaplasma marginale St. Maries		19	19
No Yes	Anaplasma centrale Israel		19	19
No Yes	Orientia tsutsugamushi Boryong		13	13
No Yes	Rickettsia bellii RML369-C		19	19
No Yes	Rickettsia canadensis McKiel		15	15
No Yes	Rickettsia typhi Wilmington		17	17
No Yes	Rickettsia prowazekii Madrid E		17	17
No Yes	Rickettsia peacockii Rustic		13	13
No Yes	Rickettsia felis URRWXCal2		21	21
No Yes	Rickettsia massiliae MTU5		16	16
No Yes	Rickettsia africae ESF-5		16	16
No Yes	Rickettsia akari Hartford		18	18
No Yes	Rickettsia rickettsii Sheila Smith		15	15
No Yes	Rickettsia conorii Malish 7		19	19
No Yes	Wolbachia endosymbiont of Culex_quinquefasciatus Pel		18	18
No Yes	Wolbachia endosymbiont of Drosophila melanogaster (Genus only)		19	19
No Yes	Wolbachia endosymbiont TRS of Brugia malayi		17	17
No Yes	Wolbachia sp. wRi		21	21
No Yes	Xanthobacter autotrophicus Py2		170	159
No Yes	Azorhizobium caulinodans ORS 571		157	154
No Yes	Methylobacterium chloromethanicum CM4		141	139
No Yes	Methylobacterium extorquens PA1		149	147
No Yes	Methylobacterium sp. 4-46		202	195
No Yes	Methylobacterium populi BJ001		132	130
No Yes	Methylobacterium nodulans ORS 2060		209	206
No Yes	Methylobacterium radiotolerans JCM 2831		184	182
No Yes	Ochrobactrum anthropi ATCC 49188		144	142
No Yes	Brucella microti CCM 4915		113	111
No Yes	Brucella canis ATCC 23365		111	109
No Yes	Brucella suis 1330		110	108
No Yes	Brucella melitensis bv. 1 16M		114	112
No Yes	Brucella ovis ATCC 25840		104	102
No Yes	Brucella abortus bv. 1 9-941		102	100
No Yes	Sinorhizobium medicae WSM419		136	133
No Yes	Sinorhizobium meliloti 1021		124	122
No Yes	Rhizobium etli CFN 42		157	157
No Yes	Rhizobium sp. NGR234		128	127
No Yes	Rhizobium leguminosarum bv. viciae 3841		198	197
No Yes	Agrobacterium vitis S4		127	126
No Yes	Agrobacterium radiobacter K84		244	243
No Yes	Agrobacterium tumefaciens C58		178	175
No Yes	Candidatus Liberibacter asiaticus psy62		24	24
No Yes	Chelativorans sp. BNC1		154	152
No Yes	Parvibaculum lavamentivorans DS-1		138	137
No Yes	Mesorhizobium loti MAFF303099		259	258
No Yes	Methylocella silvestris BL2		100	98
No Yes	Beijerinckia indica ssp. indica ATCC 9039		140	138
No Yes	Oligotropha carboxidovorans OM5		87	87
No Yes	Rhodopseudomonas palustris CGA009		154	153
No Yes	Nitrobacter winogradskyi Nb-255		63	63
No Yes	Nitrobacter hamburgensis X14		77	77
No Yes	Bradyrhizobium sp. ORS278		221	220
No Yes	Bradyrhizobium japonicum USDA 110		285	285
No Yes	Bartonella tribocorum CIP 105476		31	30
No Yes	Bartonella henselae Houston-1		30	29
No Yes	Bartonella grahamii as4aup		31	30
No Yes	Bartonella quintana Toulouse		29	28
No Yes	Bartonella bacilliformis KC583		25	24
No Yes	Acidithiobacillus ferrooxidans ATCC 23270		59	57
No Yes	Mannheimia succiniciproducens MBEL55E		64	62
No Yes	Aggregatibacter aphrophilus NJ8700		38	37
No Yes	Aggregatibacter actinomycetemcomitans D11S-1		46	45
No Yes	Haemophilus somnus 129PT		42	41
No Yes	Pasteurella multocida ssp. multocida Pm70		50	48
No Yes	Haemophilus parasuis SH0165		44	42
No Yes	Haemophilus ducreyi 35000HP		26	25
No Yes	Haemophilus influenzae Rd KW20		37	36
No Yes	Actinobacillus succinogenes 130Z		65	63
No Yes	Actinobacillus pleuropneumoniae L20		42	41
No Yes	Tolumonas auensis DSM 9187		84	83
No Yes	Aeromonas salmonicida ssp. salmonicida A449		99	96
No Yes	Aeromonas hydrophila ssp. hydrophila ATCC 7966		110	107
No Yes	Aliivibrio salmonicida LFI1238		79	77
No Yes	Vibrio fischeri ES114		79	77
No Yes	Vibrio parahaemolyticus RIMD 2210633		106	104
No Yes	Vibrio harveyi ATCC BAA-1116		93	92
No Yes	Vibrio sp. Ex25		107	105
No Yes	Vibrio splendidus LGP32		91	88
No Yes	Vibrio vulnificus YJ016 (Good annotation)		104	101
No Yes	Vibrio cholerae O1 biov. El Tor N16961		76	74
No Yes	Photobacterium profundum SS9		124	120
No Yes	Psychromonas ingrahamii 37		99	97
No Yes	Idiomarina loihiensis L2TR		73	71
No Yes	Shewanella piezotolerans WP3		95	92
No Yes	Shewanella loihica PV-4		89	88
No Yes	Shewanella halifaxensis HAW-EB4		90	89
No Yes	Shewanella sediminis HAW-EB3		94	92
No Yes	Shewanella denitrificans OS217		80	78
No Yes	Shewanella pealeana ATCC 700345		92	89
No Yes	Shewanella oneidensis MR-1		87	84
No Yes	Shewanella baltica OS155		90	88
No Yes	Shewanella woodyi ATCC 51908		97	95
No Yes	Shewanella sp. MR-7		85	83
No Yes	Shewanella amazonensis SB2B		82	80
No Yes	Shewanella violacea DSS12		94	91
No Yes	Shewanella frigidimarina NCIMB 400		100	99
No Yes	Shewanella putrefaciens CN-32		79	77
No Yes	Colwellia psychrerythraea 34H		105	103
No Yes	Pseudoalteromonas atlantica T6c		133	131
No Yes	Pseudoalteromonas haloplanktis TAC125		93	91
No Yes	Teredinibacter turnerae T7901		100	89
No Yes	Saccharophagus degradans 2-40		88	86
No Yes	Marinobacter aquaeolei VT8		100	97
No Yes	Alteromonas macleodii Deep ecotype		101	100
No Yes	Hahella chejuensis KCTC 2396		147	135
No Yes	Alcanivorax borkumensis SK2		89	87
No Yes	Marinomonas sp. MWYL1		139	136
No Yes	Chromohalobacter salexigens DSM 3043		123	122
No Yes	Methylococcus capsulatus Bath		67	65
No Yes	Dichelobacter nodosus VCS1703A		23	22
No Yes	Stenotrophomonas maltophilia R551-3		102	101
No Yes	Xylella fastidiosa 9a5c		56	55
No Yes	Xanthomonas axonopodis pv. citri 306		116	115
No Yes	Xanthomonas albilineans		79	76
No Yes	Xanthomonas oryzae pv. oryzae KACC10331		85	84
No Yes	Xanthomonas campestris pv. campestris ATCC 33913 (Completed 2001)		111	110
No Yes	Halothiobacillus neapolitanus c2		59	55
No Yes	Alkalilimnicola ehrlichii MLHE-1		69	65
No Yes	Thioalkalivibrio sp. HL-EbGR7		70	68
No Yes	Halorhodospira halophila SL1		61	60
No Yes	Allochromatium vinosum DSM 180		67	64
No Yes	Nitrosococcus halophilus Nc4		83	81
No Yes	Nitrosococcus oceani ATCC 19707		76	74
No Yes	Coxiella burnetii RSA 493		50	50
No Yes	Legionella longbeachae NSW150		102	99
No Yes	Legionella pneumophila ssp. pneumophila Philadelphia 1		77	75
No Yes	Kangiella koreensis DSM 16069		55	54
No Yes	Baumannia cicadellinicola Hc		13	13
No Yes	Candidatus Carsonella ruddii PV		6	6
No Yes	Candidatus Vesicomyosocius okutanii HA		25	24
No Yes	Candidatus Ruthia magnifica Cm		29	27
No Yes	Cronobacter turicensis z3032		125	124
No Yes	Cronobacter sakazakii ATCC BAA-894		113	112
No Yes	Candidatus Riesia pediculicola USDA		16	15
No Yes	Dickeya zeae Ech1591		120	118
No Yes	Dickeya dadantii Ech703		114	109
No Yes	Candidatus Hamiltonella defensa 5AT		31	30
No Yes	Candidatus Blochmannia floridanus		17	17
No Yes	Pectobacterium wasabiae WPP163		107	106
No Yes	Pectobacterium atrosepticum SCRI1043		133	129
No Yes	Pectobacterium carotovorum ssp. carotovorum PC1		118	116
No Yes	Sodalis glossinidius morsitans		54	53
No Yes	Pantoea ananatis LMG 20103		132	129
No Yes	Wigglesworthia glossinidia		18	17
No Yes	Buchnera aphidicola APS		15	15
No Yes	Photorhabdus asymbiotica		104	97
No Yes	Photorhabdus luminescens ssp. laumondii TTO1		89	86
No Yes	Edwardsiella ictaluri 93-146		75	74
No Yes	Edwardsiella tarda EIB202		72	71
No Yes	Yersinia pseudotuberculosis IP 32953		106	104
No Yes	Yersinia pestis CO92		101	99
No Yes	Yersinia enterocolitica ssp. enterocolitica 8081		101	99
No Yes	Xenorhabdus bovienii SS-2004		80	78
No Yes	Shigella sonnei Ss046		105	104
No Yes	Shigella flexneri 2a 2457T		99	98
No Yes	Shigella dysenteriae Sd197		89	88
No Yes	Shigella boydii Sb227		99	98
No Yes	Serratia proteamaculans 568		158	157
No Yes	Salmonella enterica ssp. enterica ser. Typhimurium LT2		108	107
No Yes	Proteus mirabilis HI4320		78	77
No Yes	Klebsiella variicola At-22		173	172
No Yes	Klebsiella pneumoniae ssp. pneumoniae MGH 78578		163	162
No Yes	Escherichia fergusonii ATCC 35469		107	106
No Yes	Escherichia coli K-12 subMG1655		112	111
No Yes	Erwinia tasmaniensis Et1/99		87	86
No Yes	Erwinia pyrifoliae Ep1/96		83	82
No Yes	Erwinia amylovora ATCC 49946		87	83
No Yes	Enterobacter sp. 638		115	114
No Yes	Citrobacter rodentium ICC168		112	111
No Yes	Citrobacter koseri ATCC BAA-895		117	113
No Yes	Azotobacter vinelandii DJ		158	155
No Yes	Pseudomonas entomophila L48		143	139
No Yes	Pseudomonas syringae pv. tomato DC3000		153	147
No Yes	Pseudomonas stutzeri A1501		111	110
No Yes	Pseudomonas putida KT2440		148	146
No Yes	Pseudomonas fluorescens Pf-5		198	184
No Yes	Pseudomonas mendocina ymp		140	138
No Yes	Pseudomonas aeruginosa PAO1		163	161
No Yes	Cellvibrio japonicus Ueda107		83	77
No Yes	Psychrobacter sp. PRwf-1		72	71
No Yes	Psychrobacter arcticus 273-4		62	62
No Yes	Psychrobacter cryohalolentis K5		80	79
No Yes	Acinetobacter sp. ADP1		98	96
No Yes	Acinetobacter baumannii ATCC 17978		94	94
No Yes	Thiomicrospira crunogena XCL-2		48	47
No Yes	Francisella philomiragia ssp. philomiragia ATCC 25017		61	58
No Yes	Francisella tularensis ssp. tularensis SCHU S4		38	36
No Yes	Gloeobacter violaceus PCC 7421		118	114
No Yes	Acaryochloris marina MBIC11017		132	130
No Yes	Prochlorococcus marinus MIT 9313		52	52
No Yes	Nostoc punctiforme PCC 73102		206	186
No Yes	Nostoc sp. PCC 7120		130	123
No Yes	Anabaena variabilis ATCC 29413		132	126
No Yes	Trichodesmium erythraeum IMS101		93	90
No Yes	Thermosynechococcus elongatus BP-1		63	63
No Yes	cyanobacterium UCYN-A		31	31
No Yes	Cyanothece sp. ATCC 51142		110	104
No Yes	Synechocystis sp. PCC 6803		84	81
No Yes	Synechococcus elongatus PCC 6301		61	61
No Yes	Microcystis aeruginosa NIES-843		101	95
No Yes	Nitrosopumilus maritimus SCM1		56	55
No Yes	Nanoarchaeum equitans Kin4-M		3	3
No Yes	Candidatus Korarchaeum cryptofilum OPF8		40	40
No Yes	Methanocella paludicola SANAE		49	48
No Yes	Methanosaeta thermophila PT		36	34
No Yes	Methanococcoides burtonii DSM 6242		44	43
No Yes	Methanosarcina acetivorans C2A		63	61
No Yes	Methanosarcina mazei Go1		55	51
No Yes	Methanosarcina barkeri Fusaro		56	54
No Yes	Methanohalophilus mahii DSM 5219		39	38
No Yes	Methanosphaerula palustris E1-9c		50	49
No Yes	Candidatus Methanoregula boonei 6A8		46	45
No Yes	Methanospirillum hungatei JF-1		48	47
No Yes	Methanocorpusculum labreanum Z		39	39
No Yes	Methanoculleus marisnigri JR1		48	47
No Yes	Methanopyrus kandleri AV19		30	30
No Yes	Ferroglobus placidus DSM 10642		43	42
No Yes	Archaeoglobus profundus DSM 5631		30	29
No Yes	Archaeoglobus fulgidus DSM 4304		58	56
No Yes	Thermococcus onnurineus NA1		33	33
No Yes	Thermococcus kodakarensis KOD1		34	34
No Yes	Thermococcus gammatolerans EJ3		36	36
No Yes	Thermococcus sibiricus MM 739		42	42
No Yes	Pyrococcus horikoshii OT3		33	33
No Yes	Pyrococcus abyssi GE5		37	37
No Yes	Pyrococcus furiosus DSM 3638		45	45
No Yes	Thermoplasma volcanium GSS1		45	45
No Yes	Thermoplasma acidophilum DSM 1728		51	51
No Yes	Picrophilus torridus DSM 9790		44	44
No Yes	Haloquadratum walsbyi DSM 16790		83	80
No Yes	Halomicrobium mukohataei DSM 12286		92	89
No Yes	Halorhabdus utahensis DSM 12940		84	82
No Yes	Haloterrigena turkmenica DSM 5511		127	123
No Yes	Natronomonas pharaonis DSM 2160		76	74
No Yes	Natrialba magadii ATCC 43099		103	101
No Yes	Halorubrum lacusprofundi ATCC 49239		80	78
No Yes	Haloferax volcanii DS2		85	83
No Yes	Halobacterium salinarum R1		65	64
No Yes	Halobacterium sp. NRC-1		65	64
No Yes	Haloarcula marismortui ATCC 43049		103	101
No Yes	Methanocaldococcus sp. FS406-22		27	27
No Yes	Methanocaldococcus fervens AG86		28	28
No Yes	Methanocaldococcus vulcanius M7		31	31
No Yes	Methanocaldococcus jannaschii DSM 2661		29	29
No Yes	Methanococcus aeolicus Nankai-3		35	35
No Yes	Methanococcus maripaludis S2		31	31
No Yes	Methanococcus vannielii SB		35	34
No Yes	Methanothermobacter thermautotrophicus Delta H		39	39
No Yes	Methanosphaera stadtmanae DSM 3091		42	42
No Yes	Methanobrevibacter ruminantium M1		52	52
No Yes	Methanobrevibacter smithii ATCC 35061		41	41
No Yes	uncultured methanogenic archaeon RC-I		47	46
No Yes	Aciduliprofundum boonei T469		31	31
No Yes	Hyperthermus butylicus DSM 5456		26	26
No Yes	Aeropyrum pernix K1		32	32
No Yes	Ignicoccus hospitalis KIN4/I		25	24
No Yes	Staphylothermus marinus F1		21	21
No Yes	Desulfurococcus kamchatkensis 1221n		20	20
No Yes	Metallosphaera sedula DSM 5348		58	58
No Yes	Sulfolobus tokodaii 7		57	57
No Yes	Sulfolobus islandicus Y.N.15.51		79	79
No Yes	Sulfolobus solfataricus P2		77	77
No Yes	Sulfolobus acidocaldarius DSM 639		61	61
No Yes	Thermofilum pendens Hrk 5		28	28
No Yes	Caldivirga maquilingensis IC-167		77	77
No Yes	Pyrobaculum calidifontis JCM 11548		44	44
No Yes	Pyrobaculum arsenaticum DSM 13514		46	46
No Yes	Pyrobaculum aerophilum IM2		45	45
No Yes	Pyrobaculum islandicum DSM 4184		44	43
No Yes	Thermoproteus neutrophilus V24Sta		39	39
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	236	232
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	182	178
No Yes	Cryptococcus neoformans var. grubii H99		174	173
No Yes	Cryptococcus neoformans B-3501A		193	192
No Yes	Ajellomyces dermatitidis ER-3		185	182
No Yes	Histoplasma capsulatum H143		157	151
No Yes	Histoplasma capsulatum H88		169	163
No Yes	Histoplasma capsulatum G186AR		167	161
No Yes	Paracoccidioides brasiliensis Pb01		160	155
No Yes	Paracoccidioides brasiliensis Pb03		160	155
No Yes	Coccidioides posadasii str. Silveira		183	178
No Yes	Coccidioides immitis RMSCC 3703		182	177
No Yes	Coccidioides immitis RMSCC 2394		184	179
No Yes	Coccidioides immitis H538.4		172	167
No Yes	Aspergillus fumigatus A1163		348	338
No Yes	Candida albicans WO-1		112	111
No Yes	Saccharomyces cerevisiae YJM789		97	96
No Yes	Saccharomyces cerevisiae RM11-1a		91	90
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	95	94
No Yes	Schizosaccharomyces pombe 972h-		89	89
No Yes	Batrachochytrium dendrobatidis JAM81		97	95
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	529	519
No Yes	Plasmodium falciparum HB3		25	25
No Yes	Plasmodium falciparum Dd2		22	22
No Yes	Candidatus Phytoplasma australiense		3	3
No Yes	Ureaplasma parvum ser. 3 ATCC 27815		2	2
No Yes	Mycoplasma agalactiae		10	10
No Yes	Mycoplasma hyopneumoniae 7448		7	7
No Yes	Mycoplasma hyopneumoniae J		7	7
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis JB197		76	75
No Yes	Leptospira interrogans ser. Copenhageni Fiocruz L1-130		83	82
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Ames)		88	87
No Yes	Treponema pallidum ssp. pallidum SS14		14	12
No Yes	Borrelia burgdorferi ZS7		8	8
No Yes	Bifidobacterium longum ssp. infantis ATCC 15697		41	41
No Yes	Bifidobacterium longum		40	40
No Yes	Bifidobacterium animalis ssp. lactis Bl-04		35	35
No Yes	Bifidobacterium animalis ssp. lactis DSM 10140		35	35
No Yes	Frankia sp. EAN1pec		391	361
No Yes	Propionibacterium acnes SK137		67	67
No Yes	Mycobacterium sp. KMS		307	297
No Yes	Mycobacterium sp. JLS		318	309
No Yes	Mycobacterium avium 104		302	282
No Yes	Mycobacterium tuberculosis KZN 1435		161	138
No Yes	Mycobacterium tuberculosis H37Ra		165	140
No Yes	Mycobacterium tuberculosis F11		165	140
No Yes	Mycobacterium tuberculosis CDC1551		159	136
No Yes	Mycobacterium bovis BCG Tokyo 172		162	137
No Yes	Mycobacterium bovis BCG Pasteur 1173P2		163	138
No Yes	Mycobacterium leprae Br4923		66	55
No Yes	Corynebacterium glutamicum R		101	101
No Yes	Corynebacterium glutamicum ATCC 13032 Bielefeld		86	85
No Yes	Tropheryma whipplei TW08/27		18	18
No Yes	Clavibacter michiganensis ssp. sepedonicus		108	108
No Yes	Dehalococcoides sp. GT		31	30
No Yes	Dehalococcoides sp. VS		32	31
No Yes	Dehalococcoides sp. BAV1		33	32
No Yes	Chlorobium phaeobacteroides BS1		74	72
No Yes	Porphyromonas gingivalis ATCC 33277		45	44
No Yes	Bacteroides fragilis YCH46		91	88
No Yes	Salinibacter ruber		106	103
No Yes	Candidatus Sulcia muelleri DMIN		9	9
No Yes	Candidiatus Sulcia muelleri SMDSEM		8	8
No Yes	Blattabacterium sp. BPLAN		17	17
No Yes	Chlamydophila pneumoniae J138		14	14
No Yes	Chlamydophila pneumoniae CWL029		14	14
No Yes	Chlamydophila pneumoniae AR39		14	14
No Yes	Chlamydia trachomatis B/TZ1A828/OT		14	14
No Yes	Chlamydia trachomatis B/Jali20/OT		14	14
No Yes	Chlamydia trachomatis L2b/UCH-1/proctitis		14	14
No Yes	Chlamydia trachomatis 434/Bu		14	14
No Yes	Chlamydia trachomatis A/HAR-13		14	14
No Yes	Thermus thermophilus HB8		59	58
No Yes	Desulfitobacterium hafniense DCB-2		84	82
No Yes	Clostridium kluyveri NBRC 12016		65	63
No Yes	Clostridium perfringens SM101		34	34
No Yes	Clostridium perfringens ATCC 13124		44	43
No Yes	Clostridium difficile R20291		64	63
No Yes	Clostridium difficile CD196		64	63
No Yes	Clostridium botulinum F Langeland		57	55
No Yes	Clostridium botulinum E3 Alaska E43		58	57
No Yes	Clostridium botulinum B1 Okra		61	59
No Yes	Clostridium botulinum Ba4 657		59	57
No Yes	Clostridium botulinum B Eklund 17B		56	55
No Yes	Clostridium botulinum A2 Kyoto		59	57
No Yes	Clostridium botulinum A3 Loch Maree		60	58
No Yes	Clostridium botulinum A Hall		56	55
No Yes	Clostridium botulinum A ATCC 19397		59	57
No Yes	Lactobacillus casei BL23		88	88
No Yes	Lactobacillus rhamnosus Lc 705		67	67
No Yes	Lactobacillus johnsonii FI9785		24	24
No Yes	Lactobacillus reuteri JCM 1112		49	49
No Yes	Lactobacillus plantarum JDM1		104	104
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC BAA-365		30	30
No Yes	Lactococcus lactis ssp. lactis KF147		69	69
No Yes	Lactococcus lactis ssp. cremoris MG1363		65	65
No Yes	Lactococcus lactis ssp. cremoris SK11		60	60
No Yes	Streptococcus equi ssp. equi 4047		31	31
No Yes	Streptococcus equi ssp. zooepidemicus		30	30
No Yes	Streptococcus pyogenes MGAS10750		28	28
No Yes	Streptococcus pyogenes MGAS10270		30	30
No Yes	Streptococcus pyogenes MGAS2096		29	29
No Yes	Streptococcus pyogenes MGAS9429		29	29
No Yes	Streptococcus pyogenes MGAS6180		29	29
No Yes	Streptococcus pyogenes NZ131		29	29
No Yes	Streptococcus pyogenes MGAS8232		29	29
No Yes	Streptococcus pyogenes MGAS10394		29	29
No Yes	Streptococcus pyogenes Manfredo		28	28
No Yes	Streptococcus pyogenes MGAS315		31	31
No Yes	Streptococcus pyogenes SSI-1		29	29
No Yes	Streptococcus pyogenes MGAS5005		30	30
No Yes	Streptococcus pneumoniae ATCC 700669		42	40
No Yes	Streptococcus pneumoniae CGSP14		40	38
No Yes	Streptococcus pneumoniae G54		43	41
No Yes	Streptococcus pneumoniae P1031		42	40
No Yes	Streptococcus pneumoniae JJA		39	37
No Yes	Streptococcus pneumoniae 70585		41	39
No Yes	Streptococcus pneumoniae Hungary19A-6		40	38
No Yes	Streptococcus pneumoniae Taiwan19F-14		38	36
No Yes	Streptococcus pneumoniae D39		43	41
No Yes	Streptococcus pneumoniae R6 (Non-virulent)		44	42
No Yes	Streptococcus agalactiae A909		40	39
No Yes	Streptococcus agalactiae 2603V/R		41	40
No Yes	Streptococcus mutans NN2025		45	44
No Yes	Streptococcus thermophilus LMD-9		30	29
No Yes	Streptococcus thermophilus CNRZ1066 (Younger strain)		35	34
No Yes	Streptococcus suis BM407		35	35
No Yes	Streptococcus suis SC84		35	35
No Yes	Streptococcus suis 98HAH33		36	36
No Yes	Streptococcus suis P1/7		35	35
No Yes	Listeria monocytogenes 08-5578		73	73
No Yes	Listeria monocytogenes 08-5923		73	73
No Yes	Listeria monocytogenes Clip80459		72	72
No Yes	Listeria monocytogenes HCC23		73	73
No Yes	Listeria monocytogenes 4b F2365		71	71
No Yes	Geobacillus sp. Y412MC61		90	90
No Yes	Geobacillus sp. Y412MC10		204	204
No Yes	Bacillus licheniformis ATCC 14580		123	122
No Yes	Bacillus cytotoxicus NVH 391-98		93	93
No Yes	Bacillus thuringiensis Al Hakam		126	126
No Yes	Bacillus cereus 03BB102		126	126
No Yes	Bacillus cereus AH820		125	125
No Yes	Bacillus cereus AH187		131	130
No Yes	Bacillus cereus B4264		131	131
No Yes	Bacillus cereus G9842		132	132
No Yes	Bacillus cereus Q1		125	125
No Yes	Bacillus cereus E33L		126	126
No Yes	Bacillus cereus ATCC 10987		125	124
No Yes	Bacillus anthracis A0248		117	117
No Yes	Bacillus anthracis CDC 684		129	129
No Yes	Bacillus anthracis Sterne		129	129
No Yes	Bacillus anthracis Ames		119	119
No Yes	Bacillus megaterium DSM319		158	158
No Yes	Staphylococcus epidermidis ATCC 12228		65	65
No Yes	Staphylococcus aureus RF122		73	72
No Yes	Staphylococcus aureus ssp. aureus ED98		75	74
No Yes	Staphylococcus aureus ssp. aureus Newman		74	73
No Yes	Staphylococcus aureus ssp. aureus Mu3		76	75
No Yes	Staphylococcus aureus ssp. aureus USA300_TCH1516		71	71
No Yes	Staphylococcus aureus ssp. aureus USA300_FPR3757		74	74
No Yes	Staphylococcus aureus ssp. aureus JH1		76	75
No Yes	Staphylococcus aureus ssp. aureus JH9		76	75
No Yes	Staphylococcus aureus ssp. aureus MSSA476		75	74
No Yes	Staphylococcus aureus ssp. aureus MRSA252		77	76
No Yes	Staphylococcus aureus ssp. aureus MW2		75	74
No Yes	Staphylococcus aureus ssp. aureus N315		76	75
No Yes	Staphylococcus aureus ssp. aureus Mu50		76	75
No Yes	Staphylococcus aureus ssp. aureus COL		73	72
No Yes	Campylobacter jejuni RM1221		39	39
No Yes	Campylobacter jejuni ssp. jejuni 81116		37	37
No Yes	Campylobacter jejuni ssp. jejuni 81-176		38	38
No Yes	Campylobacter jejuni ssp. doylei 269.97		44	44
No Yes	Helicobacter pylori B38		33	33
No Yes	Helicobacter pylori P12		32	32
No Yes	Helicobacter pylori G27		32	32
No Yes	Helicobacter pylori Shi470		31	31
No Yes	Helicobacter pylori HPAG1		32	32
No Yes	Helicobacter pylori J99		34	34
No Yes	Desulfovibrio vulgaris DP4		58	58
No Yes	Desulfovibrio vulgaris Miyazaki F		59	58
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans ATCC 27774		55	53
No Yes	Geobacter sp. M21		103	101
No Yes	Anaeromyxobacter sp. K		134	132
No Yes	Anaeromyxobacter dehalogenans 2CP-1		123	121
No Yes	Azoarcus sp. BH72		107	104
No Yes	Neisseria meningitidis alpha14		43	41
No Yes	Neisseria meningitidis 053442		46	44
No Yes	Neisseria meningitidis FAM18		44	42
No Yes	Neisseria meningitidis MC58		48	46
No Yes	Neisseria gonorrhoeae NCCP11945		46	44
No Yes	Ralstonia eutropha H16		226	225
No Yes	Ralstonia pickettii 12D		133	132
No Yes	Polynucleobacter necessarius ssp. necessarius STIR1		37	37
No Yes	Burkholderia sp. CCGE1002		230	229
No Yes	Burkholderia pseudomallei MSHR346		97	94
No Yes	Burkholderia pseudomallei 1106a		190	177
No Yes	Burkholderia pseudomallei 668		192	179
No Yes	Burkholderia pseudomallei 1710b		189	177
No Yes	Burkholderia mallei NCTC 10229		157	147
No Yes	Burkholderia mallei NCTC 10247		165	153
No Yes	Burkholderia mallei SAVP1		146	138
No Yes	Burkholderia ambifaria MC40-6		266	264
No Yes	Burkholderia cenocepacia MC0-3		271	267
No Yes	Burkholderia cenocepacia HI2424		262	258
No Yes	Burkholderia cenocepacia J2315		257	253
No Yes	Burkholderia multivorans ATCC 17616		221	216
No Yes	Caulobacter crescentus NA1000		110	109
No Yes	Zymomonas mobilis ssp. mobilis NCIMB 11163		55	55
No Yes	Rhodobacter sphaeroides KD131		130	128
No Yes	Rhodobacter sphaeroides ATCC 17025		92	90
No Yes	Rhodobacter sphaeroides ATCC 17029		130	128
No Yes	Gluconacetobacter diazotrophicus PAl 5		125	123
No Yes	Ehrlichia ruminantium Gardel		21	21
No Yes	Ehrlichia ruminantium Welgevonden		21	21
No Yes	Anaplasma marginale Florida		19	19
No Yes	Orientia tsutsugamushi Ikeda		14	14
No Yes	Rickettsia bellii OSU 85-389		17	17
No Yes	Rickettsia rickettsii Iowa		19	19
No Yes	Methylobacterium extorquens DM4		150	148
No Yes	Methylobacterium extorquens AM1		135	133
No Yes	Brucella suis ATCC 23445		106	105
No Yes	Brucella melitensis ATCC 23457		103	101
No Yes	Brucella abortus S19		109	107
No Yes	Brucella melitensis biov. Abortus 2308		102	100
No Yes	Rhizobium etli CIAT 652		145	145
No Yes	Rhizobium leguminosarum bv. trifolii WSM2304		161	161
No Yes	Rhizobium leguminosarum bv. trifolii WSM1325		194	194
No Yes	Rhodopseudomonas palustris TIE-1		153	152
No Yes	Rhodopseudomonas palustris HaA2		147	147
No Yes	Rhodopseudomonas palustris BisB5		135	134
No Yes	Rhodopseudomonas palustris BisB18		137	135
No Yes	Rhodopseudomonas palustris BisA53		134	134
No Yes	Bradyrhizobium sp. BTAi1		219	219
No Yes	Acidithiobacillus ferrooxidans ATCC 53993		58	56
No Yes	Haemophilus somnus 2336		46	45
No Yes	Haemophilus influenzae PittGG		31	30
No Yes	Haemophilus influenzae PittEE		33	32
No Yes	Haemophilus influenzae 86-028NP		34	33
No Yes	Actinobacillus pleuropneumoniae ser. 3 JL03		41	40
No Yes	Actinobacillus pleuropneumoniae ser. 7 AP76		45	44
No Yes	Vibrio fischeri MJ11		78	76
No Yes	Vibrio vulnificus CMCP6 (Poor annotation)		96	94
No Yes	Vibrio cholerae M66-2		78	76
No Yes	Vibrio cholerae O395		78	76
No Yes	Vibrio cholerae MJ-1236		77	75
No Yes	Shewanella sp. W3-18-1		75	74
No Yes	Shewanella sp. ANA-3		90	88
No Yes	Shewanella baltica OS223		91	89
No Yes	Shewanella baltica OS185		85	84
No Yes	Shewanella baltica OS195		86	85
No Yes	Shewanella sp. MR-4		85	83
No Yes	Stenotrophomonas maltophilia K279a		97	96
No Yes	Xylella fastidiosa M23		46	45
No Yes	Xylella fastidiosa M12		46	45
No Yes	Xylella fastidiosa Temecula1		46	45
No Yes	Xanthomonas campestris pv. vesicatoria 85-10 (Completed 2005)		119	118
No Yes	Xanthomonas oryzae pv. oryzae PXO99A		93	92
No Yes	Xanthomonas oryzae pv. oryzae MAFF 311018		91	90
No Yes	Xanthomonas campestris pv. campestris B100		107	106
No Yes	Xanthomonas campestris pv. campestris 8004 (Completed 2005)		110	109
No Yes	Thioalkalivibrio sp. K90mix		59	56
No Yes	Coxiella burnetii CbuK_Q154		51	51
No Yes	Coxiella burnetii CbuG_Q212		50	50
No Yes	Coxiella burnetii Dugway 5J108-111		53	53
No Yes	Coxiella burnetii RSA 331		48	48
No Yes	Legionella pneumophila Corby		81	79
No Yes	Legionella pneumophila Paris		79	77
No Yes	Legionella pneumophila Lens		79	77
No Yes	Dickeya dadantii Ech586		125	121
No Yes	Candidatus Blochmannia pennsylvanicus BPEN		17	17
No Yes	Buchnera aphidicola Cc		11	11
No Yes	Buchnera aphidicola Bp		12	12
No Yes	Buchnera aphidicola Tuc7		15	15
No Yes	Buchnera aphidicola 5A		15	15
No Yes	Buchnera aphidicola Sg		14	14
No Yes	Yersinia pseudotuberculosis PB1/+		107	105
No Yes	Yersinia pseudotuberculosis YPIII		102	101
No Yes	Yersinia pseudotuberculosis IP 31758		103	102
No Yes	Yersinia pestis Z176003		104	103
No Yes	Yersinia pestis Pestoides F		103	101
No Yes	Yersinia pestis Nepal516		104	103
No Yes	Yersinia pestis Antiqua		108	106
No Yes	Yersinia pestis Angola		94	92
No Yes	Yersinia pestis biov. Microtus 91001		101	99
No Yes	Yersinia pestis KIM		102	100
No Yes	Shigella flexneri 5 8401		98	97
No Yes	Shigella flexneri 2a 301		100	99
No Yes	Shigella boydii CDC 3083-94		97	96
No Yes	Salmonella enterica ssp. arizonae ser. 62:z4,z23:--		93	92
No Yes	Salmonella enterica ssp. enterica ser. Schwarzengrund CVM19633		103	102
No Yes	Salmonella enterica ssp. enterica ser. Enteritidis P125109		110	109
No Yes	Salmonella enterica ssp. enterica ser. Choleraesuis str. SC-B67		95	94
No Yes	Salmonella enterica ssp. enterica ser. Newport SL254		105	104
No Yes	Salmonella enterica ssp. enterica ser. Dublin CT_02021853		106	105
No Yes	Salmonella enterica ssp. enterica ser. Typhi CT18		100	99
No Yes	Salmonella enterica ssp. enterica ser. Typhi Ty2		99	98
No Yes	Salmonella enterica ssp. enterica ser. Agona SL483		110	109
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi C RKS4594		100	99
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi B SPB7		108	107
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A AKU_12601		96	95
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A ATCC 9150		96	95
No Yes	Salmonella enterica ssp. enterica ser. Heidelberg SL476		106	105
No Yes	Salmonella enterica ssp. enterica ser. Gallinarum 287/91		103	102
No Yes	Klebsiella pneumoniae 342		177	176
No Yes	Klebsiella pneumoniae NTUH-K2044		162	160
No Yes	Escherichia coli ED1a		121	119
No Yes	Escherichia coli IAI39		114	112
No Yes	Escherichia coli UMN026		117	115
No Yes	Escherichia coli 55989		113	111
No Yes	Escherichia coli S88		119	117
No Yes	Escherichia coli IAI1		114	113
No Yes	Escherichia coli BL21		109	108
No Yes	Escherichia coli ATCC 8739		117	116
No Yes	Escherichia coli BL21(DE3)		112	111
No Yes	Escherichia coli SMS-3-5		121	120
No Yes	Escherichia coli SE11		115	114
No Yes	Escherichia coli APEC O1		121	119
No Yes	Escherichia coli O103:H2 12009		108	107
No Yes	Escherichia coli UTI89		125	122
No Yes	Escherichia coli 536		120	117
No Yes	Escherichia coli HS		113	112
No Yes	Escherichia coli E24377A		116	115
No Yes	Escherichia coli O55:H7 CB9615		120	119
No Yes	Escherichia coli O26:H11 11368		117	115
No Yes	Escherichia coli CFT073		123	119
No Yes	Escherichia coli O111:H- 11128		110	109
No Yes	Escherichia coli O127:H6 E2348/69		116	115
No Yes	Escherichia coli O157:H7 EDL933		117	116
No Yes	Escherichia coli O157:H7 TW14359		116	115
No Yes	Escherichia coli O157:H7 EC4115		115	114
No Yes	Escherichia coli O157:H7 Sakai		116	115
No Yes	Escherichia coli BW2952		110	109
No Yes	Escherichia coli K-12 subW3110		112	111
No Yes	Escherichia coli K-12 subDH10B		107	107
No Yes	Escherichia coli B REL606		116	115
No Yes	Erwinia amylovora CFBP1430		86	82
No Yes	Pseudomonas syringae pv. phaseolicola 1448A		141	137
No Yes	Pseudomonas syringae pv. syringae B728a		148	143
No Yes	Pseudomonas putida W619		157	155
No Yes	Pseudomonas putida F1		161	157
No Yes	Pseudomonas putida GB-1		142	140
No Yes	Pseudomonas fluorescens SBW25		187	185
No Yes	Pseudomonas fluorescens Pf0-1		178	175
No Yes	Pseudomonas aeruginosa LESB58		162	159
No Yes	Pseudomonas aeruginosa PA7		166	164
No Yes	Pseudomonas aeruginosa UCBPP-PA14		169	166
No Yes	Acinetobacter baumannii AB307-0294		100	99
No Yes	Acinetobacter baumannii AYE		102	101
No Yes	Acinetobacter baumannii SDF		67	67
No Yes	Acinetobacter baumannii AB0057		103	102
No Yes	Acinetobacter baumannii ACICU		104	103
No Yes	Francisella novicida U112		47	45
No Yes	Francisella tularensis ssp. mediasiatica FSC147		39	37
No Yes	Francisella tularensis ssp. holarctica FTNF002-00		38	36
No Yes	Francisella tularensis ssp. holarctica OSU18		36	34
No Yes	Francisella tularensis ssp. holarctica		45	43
No Yes	Francisella tularensis ssp. tularensis WY96-3418		41	39
No Yes	Francisella tularensis ssp. tularensis FSC198		38	36
No Yes	Prochlorococcus marinus NATL1A		54	53
No Yes	Prochlorococcus marinus MIT 9301		56	55
No Yes	Prochlorococcus marinus MIT 9515		58	58
No Yes	Prochlorococcus marinus AS9601		58	57
No Yes	Prochlorococcus marinus ssp. marinus CCMP1375		53	52
No Yes	Prochlorococcus marinus ssp. pastoris CCMP1986		54	54
No Yes	Prochlorococcus marinus MIT 9215		60	60
No Yes	Prochlorococcus marinus MIT 9211		48	48
No Yes	Prochlorococcus marinus MIT 9312		55	54
No Yes	Prochlorococcus marinus MIT 9303		60	60
No Yes	Prochlorococcus marinus NATL2A		52	52
No Yes	Cyanothece sp. PCC 8802		102	99
No Yes	Cyanothece sp. PCC 7425		121	118
No Yes	Cyanothece sp. PCC 7424		102	100
No Yes	Cyanothece sp. PCC 8801		101	98
No Yes	Synechococcus sp. JA-2-3Ba(2-13) (Poor annotation)		56	55
No Yes	Synechococcus sp. JA-3-3Ab (Poor annotation)		57	56
No Yes	Synechococcus sp. CC9902 (Poor annotation)		59	59
No Yes	Synechococcus sp. RCC307		63	62
No Yes	Synechococcus sp. CC9605 (Poor annotation)		55	55
No Yes	Synechococcus sp. WH 8102 (Good annotation)		63	62
No Yes	Synechococcus sp. CC9311		64	61
No Yes	Synechococcus sp. WH 7803		62	62
No Yes	Synechococcus sp. PCC 7002		69	67
No Yes	Synechococcus elongatus PCC 7942		62	62
No Yes	Methanococcus maripaludis C6		31	31
No Yes	Methanococcus maripaludis C7		33	33
No Yes	Methanococcus maripaludis C5		35	35
No Yes	Sulfolobus islandicus Y.G.57.14		74	74
No Yes	Sulfolobus islandicus L.S.2.15		75	75
No Yes	Sulfolobus islandicus M.16.27		76	76
No Yes	Sulfolobus islandicus M.14.25		74	74
No Yes	Sulfolobus islandicus M.16.4		73	73
No Yes	Sulfolobus islandicus L.D.8.5		75	75
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	164	163
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		212	212
No Yes	Lotus japonicus (Early assembly)		55	55
No Yes	Prunus persica (Early draft)	Peach	463	456
No Yes	Manihot esculenta (Early draft)	Cassava	531	525
No Yes	Ricinus communis (Early assembly)	Castor bean	455	449
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	389	383
No Yes	Phoenix dactylifera (Early draft)	Date palm	251	247
No Yes	Trypanosoma vivax (Parial)		58	58
No Yes	Trypanosoma congolense (Partial)		66	66
No Yes	Toxoplasma gondii GT1 (Early assembly)		72	63
No Yes	Toxoplasma gondii VEG (Early assembly)		73	65
No Yes	Toxoplasma gondii RH (Archived)		73	66
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	161	160
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	156	155
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	132	131
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	151	150
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	188	187
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	182	181
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	128	128
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	143	142
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	130	129
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	290	289
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	193	192
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	128	127
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	130	129
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	164	163
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	130	130
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	143	143
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	118	118
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	120	120
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	170	169
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	104	103
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	143	142
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	193	192
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	125	124
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	160	159
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	122	122
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	142	141
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	102	102
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	128	127
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	141	140
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	128	127
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	134	133
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	110	110
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	135	134
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	183	182
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	116	116
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	184	183
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	148	146
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	143	142
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	147	144
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	187	186
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	210	210
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	196	195
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	187	186
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	203	197
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	189	186
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		121	118
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		153	152
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	116	112
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	236	232
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	152	149
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	196	189
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	141	136
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	160	156
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	161	156
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	348	342
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	622	614
No Yes	NCBI viral sequences (Viral)		70	70
No Yes	PDB chains (SCOP 1.73) (PDB)		505	503
No Yes	TargetDB (Targets)		4392	4286
No Yes	UniProt 15.0 (UniProt)		154124	148900
No Yes	UniProt 15.0 viral sequences (Viral)		104	104