FAD/NAD(P)-binding domain superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		127965	127965
No Yes	Homo sapiens 49_36k (all transcripts)	Human	154	135
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	129	108
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	53	48
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	79	69
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	127	114
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	153	134
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	57	48
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	53	44
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	50	43
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	104	87
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	135	112
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	56	48
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	61	51
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	72	60
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	54	45
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	56	48
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	60	48
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	66	59
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	85	72
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	39	35
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	62	53
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	95	78
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	57	51
No Yes	Equus caballus 49_2 (all transcripts)	Horse	67	59
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	59	49
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	58	51
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	45	39
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	60	51
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	56	48
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	50	45
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	59	51
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	50	44
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	64	53
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	114	94
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	102	86
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	74	62
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	69	59
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	56	49
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	76	66
No Yes	Xenopus laevis	African clawed frog	103	81
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	111	94
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	83	68
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	120	93
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	87	73
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	76	65
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	182	146
No Yes	Branchiostoma floridae 1.0	Florida lancelet	218	187
No Yes	Ciona savignyi 49_2f (all transcripts)		134	112
No Yes	Ciona intestinalis 49_2i (all transcripts)		148	126
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	223	199
No Yes	Helobdella robusta		46	37
No Yes	Capitella sp. I		125	111
No Yes	Bombyx mori	Domestic silkworm	96	90
No Yes	Nasonia vitripennis	Jewel wasp	86	76
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	147	137
No Yes	Drosophila grimshawi 1.3		59	53
No Yes	Drosophila willistoni 1.3		62	56
No Yes	Drosophila pseudoobscura 2.3		57	51
No Yes	Drosophila persimilis 1.3		56	49
No Yes	Drosophila yakuba 1.3		59	52
No Yes	Drosophila simulans 1.3		57	49
No Yes	Drosophila sechellia 1.3		59	53
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	99	79
No Yes	Drosophila erecta 1.3		60	52
No Yes	Drosophila ananassae 1.3		57	51
No Yes	Drosophila virilis 1.2		59	52
No Yes	Drosophila mojavensis 1.3		55	51
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	82	70
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	82	69
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	68	59
No Yes	Tribolium castaneum 3.0	Red flour beetle	87	75
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	52	46
No Yes	Acyrthosiphon pisum	Pea aphid	81	74
No Yes	Daphnia pulex	Common water flea	77	71
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	73	63
No Yes	Lottia gigantea		67	55
No Yes	Pristionchus pacificus		64	58
No Yes	Meloidogyne incognita	Southern root-knot nematode	35	30
No Yes	Meloidogyne hapla		36	30
No Yes	Brugia malayi	Agent of lymphatic filariasis	26	22
No Yes	Caenorhabditis japonica		43	38
No Yes	Caenorhabditis brenneri		41	33
No Yes	Caenorhabditis remanei		72	62
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	88	72
No Yes	Caenorhabditis briggsae 2		55	46
No Yes	Schistosoma mansoni		33	24
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	91	80
No Yes	Hydra magnipapillata		79	64
No Yes	Trichoplax adhaerens		84	68
No Yes	Proterospongia sp. ATCC 50818		68	52
No Yes	Monosiga brevicollis		65	52
No Yes	Capsaspora owczarzaki ATCC 30864		45	38
No Yes	Malassezia globosa CBS 7966		44	39
No Yes	Ustilago maydis		73	60
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		55	51
No Yes	Melampsora laricis-populina		64	59
No Yes	Sporobolomyces roseus IAM 13481		67	52
No Yes	Serpula lacrymans var. lacrymans S7.9		128	111
No Yes	Coprinopsis cinerea okayama7 130		118	105
No Yes	Pleurotus ostreatus	Oyster mushroom	161	142
No Yes	Laccaria bicolor S238N-H82		92	82
No Yes	Agaricus bisporus var. bisporus		109	96
No Yes	Schizophyllum commune		138	125
No Yes	Heterobasidion annosum		152	134
No Yes	Phanerochaete chrysosporium RP-78 2.1		151	133
No Yes	Postia placenta		243	217
No Yes	Tremella mesenterica		48	42
No Yes	Cryptococcus neoformans JEC21		56	49
No Yes	Magnaporthe grisea 70-15		166	147
No Yes	Podospora anserina		160	143
No Yes	Sporotrichum thermophile ATCC 42464		108	92
No Yes	Thielavia terrestris NRRL 8126		127	111
No Yes	Chaetomium globosum CBS 148.51		136	125
No Yes	Neurospora tetrasperma		102	89
No Yes	Neurospora discreta FGSC 8579		105	88
No Yes	Neurospora crassa OR74A		110	93
No Yes	Cryphonectria parasitica	Chestnut blight fungus	196	175
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		362	317
No Yes	Nectria haematococca mpVI		361	316
No Yes	Fusarium verticillioides 7600		289	253
No Yes	Fusarium graminearum		207	181
No Yes	Trichoderma atroviride		162	141
No Yes	Trichoderma reesei 1.2		127	113
No Yes	Trichoderma virens Gv29-8		175	154
No Yes	Verticillium dahliae VdLs.17		156	136
No Yes	Verticillium albo-atrum VaMs.102		147	133
No Yes	Botrytis cinerea B05.10		182	162
No Yes	Sclerotinia sclerotiorum		153	132
No Yes	Alternaria brassicicola		147	131
No Yes	Pyrenophora tritici-repentis		166	146
No Yes	Cochliobolus heterostrophus		200	174
No Yes	Stagonospora nodorum		238	207
No Yes	Mycosphaerella fijiensis CIRAD86		190	162
No Yes	Mycosphaerella graminicola IPO323		164	134
No Yes	Ajellomyces dermatitidis SLH14081		82	70
No Yes	Histoplasma capsulatum class NAmI strain WU24		84	70
No Yes	Microsporum gypseum		96	84
No Yes	Arthroderma benhamiae CBS 112371		90	77
No Yes	Microsporum canis CBS 113480		90	77
No Yes	Trichophyton equinum CBS 127.97		84	74
No Yes	Trichophyton verrucosum HKI 0517		90	76
No Yes	Trichophyton tonsurans CBS 112818		87	75
No Yes	Trichophyton rubrum CBS 118892		87	75
No Yes	Paracoccidioides brasiliensis Pb18		74	63
No Yes	Coccidioides posadasii RMSCC 3488		95	80
No Yes	Coccidioides immitis RS		97	79
No Yes	Uncinocarpus reesii 1704		95	79
No Yes	Aspergillus fumigatus Af293		163	146
No Yes	Neosartorya fischeri NRRL 181		183	158
No Yes	Penicillium chrysogenum Wisconsin 54-1255		202	172
No Yes	Penicillium marneffei ATCC 18224		179	153
No Yes	Aspergillus carbonarius ITEM 5010		230	206
No Yes	Aspergillus terreus NIH2624		244	214
No Yes	Aspergillus oryzae RIB40		284	250
No Yes	Aspergillus niger ATCC 1015		204	184
No Yes	Aspergillus flavus NRRL3357		314	273
No Yes	Aspergillus clavatus NRRL 1		150	131
No Yes	Aspergillus nidulans FGSC A4		239	203
No Yes	Tuber melanosporum Vittad	Perigord truffle	67	57
No Yes	Candida dubliniensis CD36		48	35
No Yes	Candida tropicalis MYA-3404		46	36
No Yes	Candida parapsilosis		55	41
No Yes	Candida albicans SC5314		46	37
No Yes	Yarrowia lipolytica CLIB122		43	33
No Yes	Candida lusitaniae ATCC 42720		39	32
No Yes	Vanderwaltozyma polyspora DSM 70294		31	26
No Yes	Candida glabrata CBS138		28	22
No Yes	Kluyveromyces thermotolerans CBS 6340		33	27
No Yes	Lachancea kluyveri		37	29
No Yes	Kluyveromyces waltii		33	25
No Yes	Lodderomyces elongisporus NRRL YB-4239		36	29
No Yes	Ashbya gossypii ATCC 10895		27	24
No Yes	Debaromyces hansenii		61	46
No Yes	Zygosaccharomyces rouxii		31	26
No Yes	Saccharomyces mikatae MIT		32	27
No Yes	Saccharomyces paradoxus MIT		36	29
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	34	26
No Yes	Saccharomyces bayanus MIT		36	29
No Yes	Candida guilliermondii ATCC 6260		136	125
No Yes	Pichia stipitis CBS 6054		55	43
No Yes	Pichia pastoris GS115		41	36
No Yes	Kluyveromyces lactis		31	27
No Yes	Schizosaccharomyces octosporus yFS286		30	24
No Yes	Schizosaccharomyces japonicus yFS275		29	24
No Yes	Schizosaccharomyces pombe	Fission yeast	32	25
No Yes	Allomyces macrogynus ATCC 38327		116	93
No Yes	Rhizopus oryzae RA 99-880		86	69
No Yes	Phycomyces blakesleeanus		73	55
No Yes	Mucor circinelloides		88	70
No Yes	Encephalitozoon intestinalis		3	3
No Yes	Encephalitozoon cuniculi		4	4
No Yes	Spizellomyces punctatus DAOM BR117		68	54
No Yes	Batrachochytrium dendrobatidis JEL423		29	24
No Yes	Dictyostelium discoideum		67	54
No Yes	Dictyostelium purpureum		57	45
No Yes	Entamoeba dispar		12	8
No Yes	Entamoeba invadens		11	6
No Yes	Entamoeba histolytica 1		21	12
No Yes	Arabidopsis lyrata	Lyrate rockcress	155	123
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	198	153
No Yes	Carica papaya	Papaya	113	96
No Yes	Medicago truncatula	Barrel medic	104	90
No Yes	Glycine max	Soybean	271	220
No Yes	Cucumis sativus	Cucumber	177	146
No Yes	Populus trichocarpa 1.1	Black cottonwood	245	209
No Yes	Vitis vinifera	Wine grape	169	135
No Yes	Brachypodium distachyon		185	151
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	251	201
No Yes	Zea mays subsp. mays	Maize	260	225
No Yes	Sorghum bicolor	Sorghum	191	147
No Yes	Selaginella moellendorffii		214	194
No Yes	Physcomitrella patens subsp. patens		138	117
No Yes	Coccomyxa sp. C-169		95	80
No Yes	Chlorella sp. NC64A		86	75
No Yes	Chlorella vulgaris		94	78
No Yes	Volvox carteri f. nagariensis		104	92
No Yes	Chlamydomonas reinhardtii 4.0		108	96
No Yes	Ostreococcus sp. RCC809		70	63
No Yes	Ostreococcus lucimarinus CCE9901		70	61
No Yes	Ostreococcus tauri		68	59
No Yes	Micromonas sp. RCC299		77	66
No Yes	Micromonas pusilla CCMP1545		72	65
No Yes	Cyanidioschyzon merolae		51	41
No Yes	Giardia lamblia		7	5
No Yes	Trypanosoma cruzi strain CL Brener		59	52
No Yes	Trypanosoma brucei		35	29
No Yes	Leishmania mexicana		33	27
No Yes	Leishmania major strain Friedlin		34	29
No Yes	Leishmania infantum JPCM5		34	29
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		31	27
No Yes	Aureococcus anophagefferens		112	101
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	68	61
No Yes	Phytophthora sojae 1.1		79	71
No Yes	Phytophthora infestans T30-4		75	68
No Yes	Phytophthora capsici		85	76
No Yes	Phaeodactylum tricornutum		94	84
No Yes	Fragilariopsis cylindrus		228	201
No Yes	Thalassiosira pseudonana		99	82
No Yes	Paramecium tetraurelia		63	49
No Yes	Tetrahymena thermophila SB210 1		67	57
No Yes	Babesia bovis T2Bo		15	12
No Yes	Theileria parva		15	11
No Yes	Theileria annulata		15	11
No Yes	Plasmodium falciparum 3D7		18	15
No Yes	Plasmodium vivax SaI-1		19	16
No Yes	Plasmodium knowlesi strain H		20	16
No Yes	Plasmodium yoelii ssp. yoelii 1		20	16
No Yes	Plasmodium chabaudi		24	23
No Yes	Plasmodium berghei ANKA		32	28
No Yes	Cryptosporidium hominis		11	10
No Yes	Cryptosporidium muris		13	12
No Yes	Cryptosporidium parvum Iowa II		12	10
No Yes	Neospora caninum Nc-Liverpool		38	30
No Yes	Neospora caninum		38	30
No Yes	Toxoplasma gondii ME49		37	30
No Yes	Naegleria gruberi		83	66
No Yes	Trichomonas vaginalis		19	15
No Yes	Guillardia theta		1	1
No Yes	Emiliania huxleyi CCMP1516		298	266
No Yes	Candidatus Phytoplasma mali		4	3
No Yes	Aster yellows witches-broom phytoplasma AYWB		4	3
No Yes	Onion yellows phytoplasma OY-M		4	3
No Yes	Acholeplasma laidlawii PG-8A		13	12
No Yes	Mesoplasma florum L1		8	7
No Yes	Ureaplasma parvum ser. 3 ATCC 700970		2	2
No Yes	Ureaplasma urealyticum ser. 10 ATCC 33699		2	2
No Yes	Mycoplasma mycoides ssp. mycoides SC PG1		11	11
No Yes	Mycoplasma capricolum ssp. capricolum ATCC 27343		12	10
No Yes	Mycoplasma crocodyli MP145		6	5
No Yes	Mycoplasma conjunctivae		7	6
No Yes	Mycoplasma penetrans HF-2		7	6
No Yes	Mycoplasma mobile 163K		9	7
No Yes	Mycoplasma arthritidis 158L3-1		2	2
No Yes	Mycoplasma agalactiae PG2		8	6
No Yes	Mycoplasma synoviae 53		6	5
No Yes	Mycoplasma pulmonis UAB CTIP		7	6
No Yes	Mycoplasma pneumoniae M129		7	6
No Yes	Mycoplasma hyopneumoniae 232		7	6
No Yes	Mycoplasma hominis		2	2
No Yes	Mycoplasma genitalium G37		7	6
No Yes	Mycoplasma gallisepticum R		7	6
No Yes	Aminobacterium colombiense DSM 12261		11	10
No Yes	Thermanaerovibrio acidaminovorans DSM 6589		14	13
No Yes	Brachyspira hyodysenteriae WA1		16	13
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis L550		21	18
No Yes	Leptospira interrogans ser. Lai 56601		30	26
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Paris)		43	38
No Yes	Treponema pallidum ssp. pallidum Nichols		4	3
No Yes	Treponema denticola ATCC 35405		10	9
No Yes	Borrelia garinii PBi		5	4
No Yes	Borrelia afzelii PKo		5	4
No Yes	Borrelia burgdorferi B31		5	4
No Yes	Borrelia recurrentis A1		4	3
No Yes	Borrelia duttonii Ly		5	4
No Yes	Borrelia turicatae 91E135		5	4
No Yes	Borrelia hermsii DAH		5	4
No Yes	Rhodopirellula baltica SH 1		51	46
No Yes	Pirellula staleyi DSM 6068		41	37
No Yes	Gardnerella vaginalis 409-05		6	6
No Yes	Bifidobacterium longum NCC2705		9	9
No Yes	Bifidobacterium animalis ssp. lactis AD011		8	8
No Yes	Bifidobacterium dentium Bd1		6	6
No Yes	Bifidobacterium adolescentis ATCC 15703		5	5
No Yes	Kineococcus radiotolerans SRS30216		48	46
No Yes	Catenulispora acidiphila DSM 44928		113	108
No Yes	Stackebrandtia nassauensis DSM 44728		82	77
No Yes	Acidothermus cellulolyticus 11B		26	24
No Yes	Nakamurella multipartita DSM 44233		76	71
No Yes	Geodermatophilus obscurus DSM 43160		72	68
No Yes	Frankia sp. CcI3		57	54
No Yes	Frankia alni ACN14a		74	70
No Yes	Thermobifida fusca YX		34	33
No Yes	Thermomonospora curvata DSM 43183		49	45
No Yes	Streptosporangium roseum DSM 43021		127	121
No Yes	Streptomyces griseus ssp. griseus NBRC 13350		89	83
No Yes	Streptomyces avermitilis MA-4680		99	91
No Yes	Streptomyces scabiei 87.22		150	141
No Yes	Streptomyces coelicolor A3(2)		116	102
No Yes	Actinosynnema mirum DSM 43827		97	92
No Yes	Saccharomonospora viridis DSM 43017		55	52
No Yes	Saccharopolyspora erythraea NRRL 2338		124	119
No Yes	Kribbella flavida DSM 17836		68	65
No Yes	Nocardioides sp. JS614		83	78
No Yes	Propionibacterium acnes KPA171202		20	20
No Yes	Salinispora arenicola CNS-205		88	85
No Yes	Salinispora tropica CNB-440		80	76
No Yes	Gordonia bronchialis DSM 43247		78	68
No Yes	Rhodococcus jostii RHA1		160	144
No Yes	Rhodococcus opacus B4		168	152
No Yes	Rhodococcus erythropolis PR4		100	87
No Yes	Nocardia farcinica IFM 10152		118	106
No Yes	Mycobacterium abscessus		119	103
No Yes	Mycobacterium sp. MCS		120	105
No Yes	Mycobacterium avium ssp. paratuberculosis K-10		85	74
No Yes	Mycobacterium vanbaalenii PYR-1		124	110
No Yes	Mycobacterium tuberculosis H37Rv		62	55
No Yes	Mycobacterium bovis AF2122/97		64	57
No Yes	Mycobacterium ulcerans Agy99		67	62
No Yes	Mycobacterium gilvum PYR-GCK		119	103
No Yes	Mycobacterium marinum M		115	102
No Yes	Mycobacterium smegmatis MC2 155		126	115
No Yes	Mycobacterium leprae TN		12	12
No Yes	Corynebacterium aurimucosum		28	25
No Yes	Corynebacterium kroppenstedtii DSM 44385		19	19
No Yes	Corynebacterium efficiens YS-314		35	32
No Yes	Corynebacterium urealyticum DSM 7109		28	28
No Yes	Corynebacterium jeikeium K411		24	24
No Yes	Corynebacterium glutamicum ATCC 13032 Kitasato		34	33
No Yes	Corynebacterium diphtheriae NCTC 13129		17	16
No Yes	Tropheryma whipplei Twist		5	5
No Yes	Sanguibacter keddieii DSM 10542		33	31
No Yes	Kytococcus sedentarius DSM 20547		22	21
No Yes	Beutenbergia cavernae DSM 12333		48	45
No Yes	Leifsonia xyli ssp. xyli CTCB07		15	15
No Yes	Clavibacter michiganensis ssp. michiganensis NCPPB 382		32	30
No Yes	Jonesia denitrificans DSM 20603		26	23
No Yes	Brachybacterium faecium DSM 4810		36	35
No Yes	Xylanimonas cellulosilytica DSM 15894		40	34
No Yes	Kocuria rhizophila DC2201		34	33
No Yes	Rothia mucilaginosa DY-18		15	13
No Yes	Arthrobacter sp. FB24		72	68
No Yes	Arthrobacter chlorophenolicus A6		58	56
No Yes	Arthrobacter aurescens TC1		63	59
No Yes	Renibacterium salmoninarum ATCC 33209		48	46
No Yes	Micrococcus luteus NCTC 2665		29	28
No Yes	Cryptobacterium curtum DSM 15641		19	18
No Yes	Eggerthella lenta DSM 2243		79	76
No Yes	Slackia heliotrinireducens DSM 20476		44	41
No Yes	Atopobium parvulum DSM 20469		8	8
No Yes	Conexibacter woesei DSM 14684		69	64
No Yes	Rubrobacter xylanophilus DSM 9941		53	51
No Yes	Acidimicrobium ferrooxidans DSM 10331		32	28
No Yes	Denitrovibrio acetiphilus DSM 12809		24	22
No Yes	Deferribacter desulfuricans SSM1		20	16
No Yes	Kosmotoga olearia TBF 19.5.1		13	11
No Yes	Petrotoga mobilis SJ95		11	9
No Yes	Fervidobacterium nodosum Rt17-B1		12	12
No Yes	Thermosipho melanesiensis BI429		12	12
No Yes	Thermosipho africanus TCF52B		12	11
No Yes	Thermotoga lettingae TMO		14	14
No Yes	Thermotoga sp. RQ2		14	13
No Yes	Thermotoga naphthophila RKU-10		13	12
No Yes	Thermotoga petrophila RKU-1		14	13
No Yes	Thermotoga neapolitana DSM 4359		16	14
No Yes	Thermotoga maritima MSB8		14	13
No Yes	Dehalococcoides sp. CBDB1		9	8
No Yes	Dehalococcoides ethenogenes 195		8	7
No Yes	Thermomicrobium roseum DSM 5159		25	24
No Yes	Sphaerobacter thermophilus DSM 20745		50	46
No Yes	Herpetosiphon aurantiacus ATCC 23779		46	45
No Yes	Roseiflexus sp. RS-1		39	36
No Yes	Roseiflexus castenholzii DSM 13941		35	34
No Yes	Chloroflexus sp. Y-400-fl		37	35
No Yes	Chloroflexus aggregans DSM 9485		37	34
No Yes	Chloroflexus aurantiacus J-10-fl		37	35
No Yes	Sulfurihydrogenibium sp. YO3AOP1		14	10
No Yes	Sulfurihydrogenibium azorense Az-Fu1		15	12
No Yes	Persephonella marina EX-H1		13	10
No Yes	Hydrogenobaculum sp. Y04AAS1		26	20
No Yes	Thermocrinis albus DSM 14484		24	19
No Yes	Aquifex aeolicus VF5		22	18
No Yes	Hydrogenobacter thermophilus TK-6		29	23
No Yes	Gemmatimonas aurantiaca T-27		27	27
No Yes	Fibrobacter succinogenes ssp. succinogenes S85		11	10
No Yes	Candidatus Koribacter versatilis Ellin345		41	39
No Yes	Candidatus Solibacter usitatus Ellin6076		54	48
No Yes	Acidobacterium capsulatum ATCC 51196		30	29
No Yes	Elusimicrobium minutum Pei191		7	7
No Yes	uncultured Termite group 1 bacterium phylotype Rs-D17		6	5
No Yes	Pelodictyon phaeoclathratiforme BU-1		32	29
No Yes	Pelodictyon luteolum DSM 273		27	23
No Yes	Chlorobium chlorochromatii CaD3		30	24
No Yes	Chlorobium phaeobacteroides DSM 266		32	29
No Yes	Chlorobium phaeovibrioides DSM 265		28	24
No Yes	Chlorobium limicola DSM 245		32	28
No Yes	Chlorobaculum parvum NCIB 8327		34	27
No Yes	Chlorobium tepidum TLS		37	31
No Yes	Chloroherpeton thalassium ATCC 35110		30	28
No Yes	Prosthecochloris aestuarii DSM 271		29	27
No Yes	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2		5	5
No Yes	Prevotella ruminicola 23		12	11
No Yes	Parabacteroides distasonis ATCC 8503		18	15
No Yes	Porphyromonas gingivalis W83		9	9
No Yes	Bacteroides vulgatus ATCC 8482		10	9
No Yes	Bacteroides thetaiotaomicron VPI-5482		15	14
No Yes	Bacteroides fragilis NCTC 9343		12	11
No Yes	Candidatus Amoebophilus asiaticus 5a2		5	5
No Yes	Salinibacter ruber DSM 13855		32	31
No Yes	Rhodothermus marinus DSM 4252		35	31
No Yes	Chitinophaga pinensis DSM 2588		67	61
No Yes	Dyadobacter fermentans DSM 18053		53	47
No Yes	Cytophaga hutchinsonii ATCC 33406		27	24
No Yes	Spirosoma linguale DSM 74		60	58
No Yes	Pedobacter heparinus DSM 2366		31	28
No Yes	Candidatus Sulcia muelleri GWSS		5	4
No Yes	Zunongwangia profunda SM-A87		39	37
No Yes	Gramella forsetii KT0803		29	27
No Yes	Robiginitalea biformata HTCC2501		30	25
No Yes	Flavobacteriaceae bacterium 3519-10		15	14
No Yes	Capnocytophaga ochracea DSM 7271		11	11
No Yes	Flavobacterium psychrophilum JIP02/86		23	20
No Yes	Flavobacterium johnsoniae UW101		36	32
No Yes	Blattabacterium sp. Bge		8	7
No Yes	Dictyoglomus turgidum DSM 6724		13	12
No Yes	Dictyoglomus thermophilum H-6-12		15	13
No Yes	Candidatus Protochlamydia amoebophila UWE25		9	9
No Yes	Chlamydophila pneumoniae TW-183		7	6
No Yes	Chlamydophila caviae GPIC		6	6
No Yes	Chlamydophila felis Fe/C-56		6	6
No Yes	Chlamydophila abortus S26/3		6	6
No Yes	Chlamydia muridarum Nigg		6	6
No Yes	Chlamydia trachomatis D/UW-3/CX		6	6
No Yes	Coraliomargarita akajimensis DSM 45221		33	28
No Yes	Opitutus terrae PB90-1		25	25
No Yes	Methylacidiphilum infernorum V4		24	21
No Yes	Akkermansia muciniphila ATCC BAA-835		7	6
No Yes	Thermodesulfovibrio yellowstonii DSM 11347		15	15
No Yes	Streptobacillus moniliformis DSM 12112		12	10
No Yes	Sebaldella termitidis ATCC 33386		20	18
No Yes	Leptotrichia buccalis DSM 1135		11	10
No Yes	Fusobacterium nucleatum ssp. nucleatum ATCC 25586		17	14
No Yes	Thermobaculum terrenum ATCC BAA-798		24	21
No Yes	Deinococcus deserti VCD115		21	21
No Yes	Deinococcus geothermalis DSM 11300		25	24
No Yes	Deinococcus radiodurans R1		29	28
No Yes	Meiothermus ruber DSM 1279		32	30
No Yes	Thermus thermophilus HB27 (First sequenced)		22	19
No Yes	Natranaerobius thermophilus JW/NM-WN-LF		29	28
No Yes	Symbiobacterium thermophilum IAM 14863		17	17
No Yes	Anaerococcus prevotii DSM 20548		20	16
No Yes	Finegoldia magna ATCC 29328		9	8
No Yes	Clostridiales genomosp. BVAB3 UPII9-5		15	13
No Yes	Anaerocellum thermophilum DSM 6725		17	14
No Yes	Candidatus Desulforudis audaxviator MP104C		26	23
No Yes	Pelotomaculum thermopropionicum SI		26	24
No Yes	Desulfitobacterium hafniense Y51		67	63
No Yes	Desulfotomaculum reducens MI-1		46	39
No Yes	Desulfotomaculum acetoxidans DSM 771		36	29
No Yes	Eubacterium rectale ATCC 33656		16	14
No Yes	Eubacterium eligens ATCC 27750		7	7
No Yes	Syntrophomonas wolfei ssp. wolfei Goettingen		19	16
No Yes	Heliobacterium modesticaldum Ice1		28	25
No Yes	Alkaliphilus oremlandii OhILAs		26	24
No Yes	Alkaliphilus metalliredigens QYMF		26	26
No Yes	Clostridium phytofermentans ISDg		32	29
No Yes	Clostridium novyi NT		15	15
No Yes	Clostridium kluyveri DSM 555		28	27
No Yes	Clostridium cellulolyticum H10		25	21
No Yes	Clostridium beijerinckii NCIMB 8052		34	31
No Yes	Clostridium thermocellum ATCC 27405		17	14
No Yes	Clostridium tetani E88		21	20
No Yes	Clostridium perfringens 13		24	22
No Yes	Clostridium difficile 630		20	17
No Yes	Clostridium botulinum A ATCC 3502		23	23
No Yes	Clostridium acetobutylicum ATCC 824		21	19
No Yes	Veillonella parvula DSM 2008		9	9
No Yes	Acidaminococcus fermentans DSM 20731		14	13
No Yes	Caldicellulosiruptor saccharolyticus DSM 8903		21	15
No Yes	Coprothermobacter proteolyticus DSM 5265		12	11
No Yes	Carboxydothermus hydrogenoformans Z-2901		27	23
No Yes	Moorella thermoacetica ATCC 39073		26	20
No Yes	Ammonifex degensii KC4		23	20
No Yes	Thermoanaerobacter pseudethanolicus ATCC 33223		18	17
No Yes	Thermoanaerobacter sp. X514		19	18
No Yes	Thermoanaerobacter tengcongensis MB4		20	19
No Yes	Thermoanaerobacter italicus Ab9		18	16
No Yes	Halothermothrix orenii H 168		20	16
No Yes	Enterococcus faecalis V583		26	21
No Yes	Oenococcus oeni PSU-1		7	6
No Yes	Leuconostoc citreum KM20		17	15
No Yes	Leuconostoc mesenteroides ssp. mesenteroides ATCC 8293		17	15
No Yes	Lactobacillus casei ATCC 334		19	16
No Yes	Lactobacillus crispatus ST1		16	14
No Yes	Lactobacillus rhamnosus GG		22	16
No Yes	Lactobacillus johnsonii NCC 533		10	10
No Yes	Lactobacillus salivarius UCC118		14	11
No Yes	Lactobacillus fermentum IFO 3956		10	9
No Yes	Lactobacillus sakei ssp. sakei 23K		14	12
No Yes	Lactobacillus reuteri DSM 20016		13	12
No Yes	Lactobacillus gasseri ATCC 33323		16	15
No Yes	Lactobacillus plantarum WCFS1		39	31
No Yes	Lactobacillus helveticus DPC 4571		8	7
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842		9	9
No Yes	Lactobacillus brevis ATCC 367		14	11
No Yes	Lactobacillus acidophilus NCFM		17	15
No Yes	Pediococcus pentosaceus ATCC 25745		18	15
No Yes	Lactococcus lactis ssp. lactis Il1403		25	21
No Yes	Streptococcus gallolyticus UCN34		17	15
No Yes	Streptococcus equi ssp. zooepidemicus MGCS10565		8	8
No Yes	Streptococcus dysgalactiae ssp. equisimilis GGS_124		21	18
No Yes	Streptococcus mitis B6		13	12
No Yes	Streptococcus uberis 0140J		22	19
No Yes	Streptococcus pyogenes M1 GAS		13	12
No Yes	Streptococcus pneumoniae TIGR4 (Virulent)		12	11
No Yes	Streptococcus agalactiae NEM316		19	17
No Yes	Streptococcus mutans UA159		17	16
No Yes	Streptococcus thermophilus LMG 18311 (Older strain)		11	10
No Yes	Streptococcus suis 05ZYH33		21	18
No Yes	Streptococcus sanguinis SK36		13	12
No Yes	Streptococcus gordonii Challis subCH1		13	12
No Yes	Exiguobacterium sp. AT1b		40	35
No Yes	Exiguobacterium sibiricum 255-15		41	35
No Yes	Bacillus tusciae DSM 2912		26	23
No Yes	Alicyclobacillus acidocaldarius ssp. acidocaldarius DSM 446		31	27
No Yes	Brevibacillus brevis NBRC 100599		52	48
No Yes	Paenibacillus sp. JDR-2		52	46
No Yes	Listeria welshimeri ser. 6b SLCC5334		20	18
No Yes	Listeria innocua Clip11262		22	20
No Yes	Listeria seeligeri ser. 1/2b SLCC3954		21	19
No Yes	Listeria monocytogenes EGD-e		21	19
No Yes	Lysinibacillus sphaericus C3-41		38	34
No Yes	Oceanobacillus iheyensis HTE831		33	27
No Yes	Anoxybacillus flavithermus WK1		34	31
No Yes	Geobacillus sp. WCH70		20	18
No Yes	Geobacillus thermodenitrificans NG80-2		22	21
No Yes	Geobacillus kaustophilus HTA426		29	25
No Yes	Bacillus subtilis ssp. subtilis 168		28	26
No Yes	Bacillus licheniformis ATCC 14580		34	28
No Yes	Bacillus amyloliquefaciens FZB42		30	26
No Yes	Bacillus halodurans C-125		39	35
No Yes	Bacillus weihenstephanensis KBAB4		44	39
No Yes	Bacillus thuringiensis ser. konkukian 97-27		44	38
No Yes	Bacillus cereus ATCC 14579		42	35
No Yes	Bacillus anthracis Ames Ancestor		41	36
No Yes	Bacillus pseudofirmus OF4		34	32
No Yes	Bacillus clausii KSM-K16		43	36
No Yes	Bacillus pumilus SAFR-032		30	27
No Yes	Bacillus megaterium QM B1551		49	44
No Yes	Macrococcus caseolyticus JCSC5402		28	24
No Yes	Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305		27	24
No Yes	Staphylococcus lugdunensis HKU09-01		40	35
No Yes	Staphylococcus haemolyticus JCSC1435		38	32
No Yes	Staphylococcus epidermidis RP62A		35	29
No Yes	Staphylococcus carnosus ssp. carnosus TM300		30	27
No Yes	Staphylococcus aureus ssp. aureus NCTC 8325		32	27
No Yes	Nautilia profundicola AmH		15	14
No Yes	Sulfurospirillum deleyianum DSM 6946		13	12
No Yes	Arcobacter butzleri RM4018		19	17
No Yes	Campylobacter hominis ATCC BAA-381		8	6
No Yes	Campylobacter lari RM2100		10	9
No Yes	Campylobacter curvus 525.92		15	15
No Yes	Campylobacter concisus 13826		13	13
No Yes	Campylobacter jejuni ssp. jejuni NCTC 11168		9	9
No Yes	Campylobacter fetus ssp. fetus 82-40		8	8
No Yes	Sulfurimonas denitrificans DSM 1251		21	16
No Yes	Wolinella succinogenes DSM 1740		14	13
No Yes	Helicobacter hepaticus ATCC 51449		10	10
No Yes	Helicobacter mustelae 12198		10	8
No Yes	Helicobacter acinonychis Sheeba		5	5
No Yes	Helicobacter pylori 26695		6	5
No Yes	Nitratiruptor sp. SB155-2		20	15
No Yes	Sulfurovum sp. NBC37-1		35	29
No Yes	Bdellovibrio bacteriovorus HD100		29	27
No Yes	Syntrophus aciditrophicus SB		23	18
No Yes	Syntrophobacter fumaroxidans MPOB		60	47
No Yes	Desulfotalea psychrophila LSv54		32	28
No Yes	Desulfatibacillum alkenivorans AK-01		58	48
No Yes	Desulfobacterium autotrophicum HRM2		63	54
No Yes	Desulfococcus oleovorans Hxd3		31	26
No Yes	Desulfohalobium retbaense DSM 5692		35	31
No Yes	Desulfomicrobium baculatum DSM 4028		34	28
No Yes	Lawsonia intracellularis PHE/MN1-00		11	9
No Yes	Desulfovibrio magneticus RS-1		32	29
No Yes	Desulfovibrio vulgaris Hildenborough		29	28
No Yes	Desulfovibrio salexigens DSM 2638		37	33
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans G20		31	27
No Yes	Pelobacter propionicus DSM 2379		18	16
No Yes	Pelobacter carbinolicus DSM 2380		31	25
No Yes	Geobacter uraniireducens Rf4		21	19
No Yes	Geobacter sp. FRC-32		19	16
No Yes	Geobacter lovleyi SZ		22	22
No Yes	Geobacter bemidjiensis Bem		21	19
No Yes	Geobacter sulfurreducens PCA		28	22
No Yes	Geobacter metallireducens GS-15		28	23
No Yes	Haliangium ochraceum DSM 14365		57	50
No Yes	Sorangium cellulosum So ce 56		79	73
No Yes	Anaeromyxobacter sp. Fw109-5		37	35
No Yes	Anaeromyxobacter dehalogenans 2CP-C		33	31
No Yes	Myxococcus xanthus DK 1622		63	58
No Yes	Magnetococcus sp. MC-1		24	22
No Yes	Sideroxydans lithotrophicus ES-1		28	23
No Yes	Aromatoleum aromaticum EbN1		39	36
No Yes	Dechloromonas aromatica RCB		33	29
No Yes	Thauera sp. MZ1T		40	35
No Yes	Laribacter hongkongensis HLHK9		19	18
No Yes	Chromobacterium violaceum ATCC 12472		43	41
No Yes	Neisseria meningitidis Z2491		16	15
No Yes	Neisseria gonorrhoeae FA 1090		17	16
No Yes	Methylotenera mobilis JLW8		24	19
No Yes	Methylovorus sp. SIP3-4		22	19
No Yes	Methylobacillus flagellatus KT		25	21
No Yes	Thiobacillus denitrificans ATCC 25259		31	27
No Yes	Candidatus Accumulibacter phosphatis clade IIA UW-1		36	32
No Yes	Methylibium petroleiphilum PM1		63	51
No Yes	Leptothrix cholodnii SP-6		58	50
No Yes	Ralstonia eutropha JMP134		82	76
No Yes	Cupriavidus taiwanensis		67	61
No Yes	Ralstonia metallidurans CH34		76	67
No Yes	Ralstonia pickettii 12J		55	50
No Yes	Ralstonia solanacearum GMI1000		43	39
No Yes	Polynucleobacter necessarius ssp. asymbioticus QLW-P1DMWA-1		29	25
No Yes	Burkholderia phytofirmans PsJN		123	115
No Yes	Burkholderia phymatum STM815		73	68
No Yes	Burkholderia thailandensis E264		72	62
No Yes	Burkholderia pseudomallei K96243		70	62
No Yes	Burkholderia mallei ATCC 23344		62	54
No Yes	Burkholderia sp. 383		141	131
No Yes	Burkholderia ambifaria AMMD		102	94
No Yes	Burkholderia cenocepacia AU 1054		95	89
No Yes	Burkholderia multivorans ATCC 17616		95	88
No Yes	Burkholderia vietnamiensis G4		92	84
No Yes	Burkholderia xenovorans LB400		155	141
No Yes	Burkholderia glumae BGR1		55	53
No Yes	Verminephrobacter eiseniae EF01-2		77	73
No Yes	Delftia acidovorans SPH-1		65	59
No Yes	Polaromonas sp. JS666		77	72
No Yes	Polaromonas naphthalenivorans CJ2		51	46
No Yes	Variovorax paradoxus S110		90	79
No Yes	Rhodoferax ferrireducens T118		53	47
No Yes	Diaphorobacter sp. TPSY		40	36
No Yes	Acidovorax sp. JS42		47	41
No Yes	Acidovorax citrulli AAC00-1		45	42
No Yes	Comamonas sp. CNB-1		68	60
No Yes	Herminiimonas arsenicoxydans		32	30
No Yes	Janthinobacterium sp. Marseille		32	32
No Yes	Bordetella petrii DSM 12804		56	54
No Yes	Bordetella avium 197N		51	46
No Yes	Bordetella pertussis Tohama I		42	39
No Yes	Bordetella parapertussis 12822		61	58
No Yes	Bordetella bronchiseptica RB50		71	68
No Yes	Nitrosospira multiformis ATCC 25196		30	25
No Yes	Nitrosomonas eutropha C91		21	19
No Yes	Nitrosomonas europaea ATCC 19718		22	20
No Yes	Caulobacter sp. K31		76	72
No Yes	Caulobacter crescentus CB15		52	49
No Yes	Caulobacter segnis ATCC 21756		54	52
No Yes	Phenylobacterium zucineum HLK1		47	40
No Yes	Erythrobacter litoralis HTCC2594		33	30
No Yes	Sphingopyxis alaskensis RB2256		40	36
No Yes	Novosphingobium aromaticivorans DSM 12444		57	49
No Yes	Sphingobium japonicum UT26S		44	40
No Yes	Sphingomonas wittichii RW1		94	88
No Yes	Zymomonas mobilis ssp. mobilis ZM4		14	13
No Yes	Maricaulis maris MCS10		30	30
No Yes	Hirschia baltica ATCC 49814		36	33
No Yes	Hyphomonas neptunium ATCC 15444		51	41
No Yes	Dinoroseobacter shibae DFL 12		47	43
No Yes	Jannaschia sp. CCS1		68	65
No Yes	Ruegeria sp. TM1040		43	41
No Yes	Ruegeria pomeroyi DSS-3		70	67
No Yes	Roseobacter denitrificans OCh 114		70	66
No Yes	Rhodobacter sphaeroides 2.4.1		50	47
No Yes	Rhodobacter capsulatus SB1003		45	40
No Yes	Paracoccus denitrificans PD1222		53	50
No Yes	Magnetospirillum magneticum AMB-1		32	28
No Yes	Rhodospirillum centenum SW		35	34
No Yes	Rhodospirillum rubrum ATCC 11170		34	31
No Yes	Azospirillum sp. B510		16	16
No Yes	Granulibacter bethesdensis CGDNIH1		36	33
No Yes	Gluconacetobacter diazotrophicus PAl 5		42	40
No Yes	Gluconobacter oxydans 621H		31	29
No Yes	Acetobacter pasteurianus IFO 3283-01		29	28
No Yes	alpha proteobacterium IMCC1322		53	50
No Yes	Candidatus Pelagibacter ubique HTCC1062		28	26
No Yes	Neorickettsia sennetsu Miyayama		10	8
No Yes	Neorickettsia risticii Illinois		9	8
No Yes	Ehrlichia chaffeensis Arkansas		7	7
No Yes	Ehrlichia canis Jake		9	8
No Yes	Ehrlichia ruminantium Welgevonden		8	8
No Yes	Anaplasma phagocytophilum HZ		10	9
No Yes	Anaplasma marginale St. Maries		8	7
No Yes	Anaplasma centrale Israel		9	8
No Yes	Orientia tsutsugamushi Boryong		7	6
No Yes	Rickettsia bellii RML369-C		7	7
No Yes	Rickettsia canadensis McKiel		7	7
No Yes	Rickettsia typhi Wilmington		7	7
No Yes	Rickettsia prowazekii Madrid E		7	7
No Yes	Rickettsia peacockii Rustic		7	7
No Yes	Rickettsia felis URRWXCal2		7	7
No Yes	Rickettsia massiliae MTU5		7	7
No Yes	Rickettsia africae ESF-5		7	7
No Yes	Rickettsia akari Hartford		7	7
No Yes	Rickettsia rickettsii Sheila Smith		7	7
No Yes	Rickettsia conorii Malish 7		7	7
No Yes	Wolbachia endosymbiont of Culex_quinquefasciatus Pel		8	7
No Yes	Wolbachia endosymbiont of Drosophila melanogaster (Genus only)		8	7
No Yes	Wolbachia endosymbiont TRS of Brugia malayi		8	7
No Yes	Wolbachia sp. wRi		7	7
No Yes	Xanthobacter autotrophicus Py2		66	62
No Yes	Azorhizobium caulinodans ORS 571		67	66
No Yes	Methylobacterium chloromethanicum CM4		55	51
No Yes	Methylobacterium extorquens PA1		55	51
No Yes	Methylobacterium sp. 4-46		77	73
No Yes	Methylobacterium populi BJ001		52	50
No Yes	Methylobacterium nodulans ORS 2060		74	71
No Yes	Methylobacterium radiotolerans JCM 2831		74	67
No Yes	Candidatus Hodgkinia cicadicola Dsem		3	3
No Yes	Ochrobactrum anthropi ATCC 49188		61	58
No Yes	Brucella microti CCM 4915		40	40
No Yes	Brucella canis ATCC 23365		38	38
No Yes	Brucella suis 1330		37	36
No Yes	Brucella melitensis bv. 1 16M		42	42
No Yes	Brucella ovis ATCC 25840		35	35
No Yes	Brucella abortus bv. 1 9-941		31	31
No Yes	Sinorhizobium medicae WSM419		49	47
No Yes	Sinorhizobium meliloti 1021		48	46
No Yes	Rhizobium etli CFN 42		38	36
No Yes	Rhizobium sp. NGR234		46	43
No Yes	Rhizobium leguminosarum bv. viciae 3841		46	40
No Yes	Agrobacterium vitis S4		59	56
No Yes	Agrobacterium radiobacter K84		92	86
No Yes	Agrobacterium tumefaciens C58		64	62
No Yes	Candidatus Liberibacter asiaticus psy62		9	9
No Yes	Chelativorans sp. BNC1		56	54
No Yes	Parvibaculum lavamentivorans DS-1		58	52
No Yes	Mesorhizobium loti MAFF303099		114	108
No Yes	Methylocella silvestris BL2		49	44
No Yes	Beijerinckia indica ssp. indica ATCC 9039		40	37
No Yes	Oligotropha carboxidovorans OM5		34	32
No Yes	Rhodopseudomonas palustris CGA009		54	51
No Yes	Nitrobacter winogradskyi Nb-255		36	32
No Yes	Nitrobacter hamburgensis X14		40	34
No Yes	Bradyrhizobium sp. ORS278		100	95
No Yes	Bradyrhizobium japonicum USDA 110		122	113
No Yes	Bartonella tribocorum CIP 105476		13	13
No Yes	Bartonella henselae Houston-1		13	13
No Yes	Bartonella grahamii as4aup		14	14
No Yes	Bartonella quintana Toulouse		11	11
No Yes	Bartonella bacilliformis KC583		12	12
No Yes	Acidithiobacillus ferrooxidans ATCC 23270		32	27
No Yes	Mannheimia succiniciproducens MBEL55E		13	12
No Yes	Aggregatibacter aphrophilus NJ8700		12	12
No Yes	Aggregatibacter actinomycetemcomitans D11S-1		10	9
No Yes	Haemophilus somnus 129PT		14	14
No Yes	Pasteurella multocida ssp. multocida Pm70		15	14
No Yes	Haemophilus parasuis SH0165		16	15
No Yes	Haemophilus ducreyi 35000HP		14	13
No Yes	Haemophilus influenzae Rd KW20		12	11
No Yes	Actinobacillus succinogenes 130Z		11	10
No Yes	Actinobacillus pleuropneumoniae L20		15	14
No Yes	Tolumonas auensis DSM 9187		32	26
No Yes	Aeromonas salmonicida ssp. salmonicida A449		34	28
No Yes	Aeromonas hydrophila ssp. hydrophila ATCC 7966		37	30
No Yes	Aliivibrio salmonicida LFI1238		34	29
No Yes	Vibrio fischeri ES114		30	26
No Yes	Vibrio parahaemolyticus RIMD 2210633		34	30
No Yes	Vibrio harveyi ATCC BAA-1116		38	34
No Yes	Vibrio sp. Ex25		35	32
No Yes	Vibrio splendidus LGP32		33	29
No Yes	Vibrio vulnificus YJ016 (Good annotation)		39	35
No Yes	Vibrio cholerae O1 biov. El Tor N16961		28	25
No Yes	Photobacterium profundum SS9		38	33
No Yes	Psychromonas ingrahamii 37		40	35
No Yes	Idiomarina loihiensis L2TR		21	20
No Yes	Shewanella piezotolerans WP3		46	40
No Yes	Shewanella loihica PV-4		40	36
No Yes	Shewanella halifaxensis HAW-EB4		46	43
No Yes	Shewanella sediminis HAW-EB3		52	48
No Yes	Shewanella denitrificans OS217		29	26
No Yes	Shewanella pealeana ATCC 700345		49	44
No Yes	Shewanella oneidensis MR-1		36	35
No Yes	Shewanella baltica OS155		38	36
No Yes	Shewanella woodyi ATCC 51908		58	52
No Yes	Shewanella sp. MR-7		30	29
No Yes	Shewanella amazonensis SB2B		27	27
No Yes	Shewanella violacea DSS12		37	32
No Yes	Shewanella frigidimarina NCIMB 400		46	40
No Yes	Shewanella putrefaciens CN-32		37	34
No Yes	Colwellia psychrerythraea 34H		49	49
No Yes	Pseudoalteromonas atlantica T6c		51	47
No Yes	Pseudoalteromonas haloplanktis TAC125		36	33
No Yes	Teredinibacter turnerae T7901		37	32
No Yes	Saccharophagus degradans 2-40		46	43
No Yes	Marinobacter aquaeolei VT8		53	45
No Yes	Alteromonas macleodii Deep ecotype		36	32
No Yes	Hahella chejuensis KCTC 2396		48	43
No Yes	Alcanivorax borkumensis SK2		53	42
No Yes	Marinomonas sp. MWYL1		63	58
No Yes	Chromohalobacter salexigens DSM 3043		52	47
No Yes	Methylococcus capsulatus Bath		24	20
No Yes	Dichelobacter nodosus VCS1703A		9	9
No Yes	Stenotrophomonas maltophilia R551-3		34	33
No Yes	Xylella fastidiosa 9a5c		13	13
No Yes	Xanthomonas axonopodis pv. citri 306		45	43
No Yes	Xanthomonas albilineans		28	28
No Yes	Xanthomonas oryzae pv. oryzae KACC10331		31	30
No Yes	Xanthomonas campestris pv. campestris ATCC 33913 (Completed 2001)		46	43
No Yes	Halothiobacillus neapolitanus c2		29	23
No Yes	Alkalilimnicola ehrlichii MLHE-1		28	23
No Yes	Thioalkalivibrio sp. HL-EbGR7		30	27
No Yes	Halorhodospira halophila SL1		30	26
No Yes	Allochromatium vinosum DSM 180		24	21
No Yes	Nitrosococcus halophilus Nc4		34	31
No Yes	Nitrosococcus oceani ATCC 19707		22	21
No Yes	Coxiella burnetii RSA 493		17	16
No Yes	Legionella longbeachae NSW150		34	32
No Yes	Legionella pneumophila ssp. pneumophila Philadelphia 1		26	24
No Yes	Kangiella koreensis DSM 16069		24	23
No Yes	Baumannia cicadellinicola Hc		5	5
No Yes	Candidatus Carsonella ruddii PV		1	1
No Yes	Candidatus Vesicomyosocius okutanii HA		14	12
No Yes	Candidatus Ruthia magnifica Cm		14	12
No Yes	Cronobacter turicensis z3032		34	29
No Yes	Cronobacter sakazakii ATCC BAA-894		33	27
No Yes	Candidatus Riesia pediculicola USDA		8	7
No Yes	Dickeya zeae Ech1591		38	34
No Yes	Dickeya dadantii Ech703		38	33
No Yes	Candidatus Hamiltonella defensa 5AT		10	9
No Yes	Candidatus Blochmannia floridanus		7	7
No Yes	Pectobacterium wasabiae WPP163		33	27
No Yes	Pectobacterium atrosepticum SCRI1043		33	30
No Yes	Pectobacterium carotovorum ssp. carotovorum PC1		34	30
No Yes	Sodalis glossinidius morsitans		16	15
No Yes	Pantoea ananatis LMG 20103		50	42
No Yes	Wigglesworthia glossinidia		9	8
No Yes	Buchnera aphidicola APS		4	3
No Yes	Photorhabdus asymbiotica		35	34
No Yes	Photorhabdus luminescens ssp. laumondii TTO1		41	38
No Yes	Edwardsiella ictaluri 93-146		21	21
No Yes	Edwardsiella tarda EIB202		24	24
No Yes	Yersinia pseudotuberculosis IP 32953		32	27
No Yes	Yersinia pestis CO92		32	27
No Yes	Yersinia enterocolitica ssp. enterocolitica 8081		27	25
No Yes	Xenorhabdus bovienii SS-2004		26	25
No Yes	Shigella sonnei Ss046		34	31
No Yes	Shigella flexneri 2a 2457T		30	28
No Yes	Shigella dysenteriae Sd197		30	28
No Yes	Shigella boydii Sb227		30	27
No Yes	Serratia proteamaculans 568		60	51
No Yes	Salmonella enterica ssp. enterica ser. Typhimurium LT2		35	33
No Yes	Proteus mirabilis HI4320		29	27
No Yes	Klebsiella variicola At-22		58	52
No Yes	Klebsiella pneumoniae ssp. pneumoniae MGH 78578		49	43
No Yes	Escherichia fergusonii ATCC 35469		38	36
No Yes	Escherichia coli K-12 subMG1655		36	33
No Yes	Erwinia tasmaniensis Et1/99		34	32
No Yes	Erwinia pyrifoliae Ep1/96		32	32
No Yes	Erwinia amylovora ATCC 49946		33	33
No Yes	Enterobacter sp. 638		33	28
No Yes	Citrobacter rodentium ICC168		43	38
No Yes	Citrobacter koseri ATCC BAA-895		39	34
No Yes	Azotobacter vinelandii DJ		47	44
No Yes	Pseudomonas entomophila L48		80	73
No Yes	Pseudomonas syringae pv. tomato DC3000		59	56
No Yes	Pseudomonas stutzeri A1501		50	45
No Yes	Pseudomonas putida KT2440		83	77
No Yes	Pseudomonas fluorescens Pf-5		89	84
No Yes	Pseudomonas mendocina ymp		62	56
No Yes	Pseudomonas aeruginosa PAO1		80	75
No Yes	Cellvibrio japonicus Ueda107		45	42
No Yes	Psychrobacter sp. PRwf-1		28	24
No Yes	Psychrobacter arcticus 273-4		28	25
No Yes	Psychrobacter cryohalolentis K5		38	33
No Yes	Acinetobacter sp. ADP1		59	51
No Yes	Acinetobacter baumannii ATCC 17978		65	60
No Yes	Thiomicrospira crunogena XCL-2		27	21
No Yes	Francisella philomiragia ssp. philomiragia ATCC 25017		25	23
No Yes	Francisella tularensis ssp. tularensis SCHU S4		16	15
No Yes	Gloeobacter violaceus PCC 7421		45	42
No Yes	Acaryochloris marina MBIC11017		71	63
No Yes	Prochlorococcus marinus MIT 9313		33	30
No Yes	Nostoc punctiforme PCC 73102		70	63
No Yes	Nostoc sp. PCC 7120		54	47
No Yes	Anabaena variabilis ATCC 29413		62	53
No Yes	Trichodesmium erythraeum IMS101		49	43
No Yes	Thermosynechococcus elongatus BP-1		26	22
No Yes	cyanobacterium UCYN-A		15	13
No Yes	Cyanothece sp. ATCC 51142		57	48
No Yes	Synechocystis sp. PCC 6803		39	35
No Yes	Synechococcus elongatus PCC 6301		38	35
No Yes	Microcystis aeruginosa NIES-843		40	35
No Yes	Nitrosopumilus maritimus SCM1		12	10
No Yes	Nanoarchaeum equitans Kin4-M		3	2
No Yes	Candidatus Korarchaeum cryptofilum OPF8		17	16
No Yes	Methanocella paludicola SANAE		18	17
No Yes	Methanosaeta thermophila PT		11	11
No Yes	Methanococcoides burtonii DSM 6242		14	12
No Yes	Methanosarcina acetivorans C2A		23	22
No Yes	Methanosarcina mazei Go1		21	20
No Yes	Methanosarcina barkeri Fusaro		23	23
No Yes	Methanohalophilus mahii DSM 5219		16	14
No Yes	Methanosphaerula palustris E1-9c		12	12
No Yes	Candidatus Methanoregula boonei 6A8		10	10
No Yes	Methanospirillum hungatei JF-1		11	11
No Yes	Methanocorpusculum labreanum Z		11	11
No Yes	Methanoculleus marisnigri JR1		14	14
No Yes	Methanopyrus kandleri AV19		12	11
No Yes	Ferroglobus placidus DSM 10642		23	20
No Yes	Archaeoglobus profundus DSM 5631		17	15
No Yes	Archaeoglobus fulgidus DSM 4304		32	29
No Yes	Thermococcus onnurineus NA1		17	16
No Yes	Thermococcus kodakarensis KOD1		18	16
No Yes	Thermococcus gammatolerans EJ3		19	17
No Yes	Thermococcus sibiricus MM 739		17	16
No Yes	Pyrococcus horikoshii OT3		16	14
No Yes	Pyrococcus abyssi GE5		15	14
No Yes	Pyrococcus furiosus DSM 3638		17	16
No Yes	Thermoplasma volcanium GSS1		20	16
No Yes	Thermoplasma acidophilum DSM 1728		20	16
No Yes	Picrophilus torridus DSM 9790		23	20
No Yes	Haloquadratum walsbyi DSM 16790		33	28
No Yes	Halomicrobium mukohataei DSM 12286		36	34
No Yes	Halorhabdus utahensis DSM 12940		41	37
No Yes	Haloterrigena turkmenica DSM 5511		39	36
No Yes	Natronomonas pharaonis DSM 2160		25	22
No Yes	Natrialba magadii ATCC 43099		37	32
No Yes	Halorubrum lacusprofundi ATCC 49239		35	30
No Yes	Haloferax volcanii DS2		31	27
No Yes	Halobacterium salinarum R1		25	23
No Yes	Halobacterium sp. NRC-1		25	23
No Yes	Haloarcula marismortui ATCC 43049		37	33
No Yes	Methanocaldococcus sp. FS406-22		13	11
No Yes	Methanocaldococcus fervens AG86		13	12
No Yes	Methanocaldococcus vulcanius M7		12	11
No Yes	Methanocaldococcus jannaschii DSM 2661		12	11
No Yes	Methanococcus aeolicus Nankai-3		13	12
No Yes	Methanococcus maripaludis S2		16	14
No Yes	Methanococcus vannielii SB		13	11
No Yes	Methanothermobacter thermautotrophicus Delta H		12	11
No Yes	Methanosphaera stadtmanae DSM 3091		17	14
No Yes	Methanobrevibacter ruminantium M1		13	11
No Yes	Methanobrevibacter smithii ATCC 35061		12	9
No Yes	uncultured methanogenic archaeon RC-I		15	15
No Yes	Aciduliprofundum boonei T469		16	15
No Yes	Hyperthermus butylicus DSM 5456		16	15
No Yes	Aeropyrum pernix K1		18	16
No Yes	Ignicoccus hospitalis KIN4/I		14	12
No Yes	Staphylothermus marinus F1		10	10
No Yes	Desulfurococcus kamchatkensis 1221n		11	11
No Yes	Metallosphaera sedula DSM 5348		42	35
No Yes	Sulfolobus tokodaii 7		39	32
No Yes	Sulfolobus islandicus Y.N.15.51		38	33
No Yes	Sulfolobus solfataricus P2		40	34
No Yes	Sulfolobus acidocaldarius DSM 639		34	30
No Yes	Thermofilum pendens Hrk 5		19	16
No Yes	Caldivirga maquilingensis IC-167		27	24
No Yes	Pyrobaculum calidifontis JCM 11548		30	25
No Yes	Pyrobaculum arsenaticum DSM 13514		27	23
No Yes	Pyrobaculum aerophilum IM2		25	21
No Yes	Pyrobaculum islandicum DSM 4184		15	14
No Yes	Thermoproteus neutrophilus V24Sta		16	16
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	99	79
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	61	50
No Yes	Cryptococcus neoformans var. grubii H99		70	60
No Yes	Cryptococcus neoformans B-3501A		63	56
No Yes	Ajellomyces dermatitidis ER-3		89	75
No Yes	Histoplasma capsulatum H143		81	73
No Yes	Histoplasma capsulatum H88		80	69
No Yes	Histoplasma capsulatum G186AR		86	73
No Yes	Paracoccidioides brasiliensis Pb01		71	65
No Yes	Paracoccidioides brasiliensis Pb03		73	63
No Yes	Coccidioides posadasii str. Silveira		94	79
No Yes	Coccidioides immitis RMSCC 3703		86	75
No Yes	Coccidioides immitis RMSCC 2394		97	80
No Yes	Coccidioides immitis H538.4		93	79
No Yes	Aspergillus fumigatus A1163		158	141
No Yes	Candida albicans WO-1		46	36
No Yes	Saccharomyces cerevisiae YJM789		34	26
No Yes	Saccharomyces cerevisiae RM11-1a		34	26
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	34	26
No Yes	Schizosaccharomyces pombe 972h-		31	24
No Yes	Batrachochytrium dendrobatidis JAM81		42	33
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	214	172
No Yes	Plasmodium falciparum HB3		17	14
No Yes	Plasmodium falciparum Dd2		13	12
No Yes	Candidatus Phytoplasma australiense		4	3
No Yes	Ureaplasma parvum ser. 3 ATCC 27815		2	2
No Yes	Mycoplasma agalactiae		8	6
No Yes	Mycoplasma hyopneumoniae 7448		7	6
No Yes	Mycoplasma hyopneumoniae J		7	6
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis JB197		21	18
No Yes	Leptospira interrogans ser. Copenhageni Fiocruz L1-130		31	27
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Ames)		43	38
No Yes	Treponema pallidum ssp. pallidum SS14		4	3
No Yes	Borrelia burgdorferi ZS7		5	4
No Yes	Bifidobacterium longum ssp. infantis ATCC 15697		10	10
No Yes	Bifidobacterium longum		9	9
No Yes	Bifidobacterium animalis ssp. lactis Bl-04		8	8
No Yes	Bifidobacterium animalis ssp. lactis DSM 10140		8	8
No Yes	Frankia sp. EAN1pec		83	75
No Yes	Propionibacterium acnes SK137		21	21
No Yes	Mycobacterium sp. KMS		120	105
No Yes	Mycobacterium sp. JLS		122	106
No Yes	Mycobacterium avium 104		89	79
No Yes	Mycobacterium tuberculosis KZN 1435		61	55
No Yes	Mycobacterium tuberculosis H37Ra		62	55
No Yes	Mycobacterium tuberculosis F11		61	55
No Yes	Mycobacterium tuberculosis CDC1551		61	54
No Yes	Mycobacterium bovis BCG Tokyo 172		68	61
No Yes	Mycobacterium bovis BCG Pasteur 1173P2		66	59
No Yes	Mycobacterium leprae Br4923		12	12
No Yes	Corynebacterium glutamicum R		43	41
No Yes	Corynebacterium glutamicum ATCC 13032 Bielefeld		34	33
No Yes	Tropheryma whipplei TW08/27		5	5
No Yes	Clavibacter michiganensis ssp. sepedonicus		30	28
No Yes	Dehalococcoides sp. GT		9	8
No Yes	Dehalococcoides sp. VS		9	8
No Yes	Dehalococcoides sp. BAV1		9	8
No Yes	Chlorobium phaeobacteroides BS1		27	25
No Yes	Porphyromonas gingivalis ATCC 33277		9	9
No Yes	Bacteroides fragilis YCH46		12	11
No Yes	Salinibacter ruber		32	31
No Yes	Candidatus Sulcia muelleri DMIN		5	4
No Yes	Candidiatus Sulcia muelleri SMDSEM		6	5
No Yes	Blattabacterium sp. BPLAN		9	7
No Yes	Chlamydophila pneumoniae J138		7	6
No Yes	Chlamydophila pneumoniae CWL029		7	6
No Yes	Chlamydophila pneumoniae AR39		7	6
No Yes	Chlamydia trachomatis B/TZ1A828/OT		5	5
No Yes	Chlamydia trachomatis B/Jali20/OT		6	6
No Yes	Chlamydia trachomatis L2b/UCH-1/proctitis		6	6
No Yes	Chlamydia trachomatis 434/Bu		6	6
No Yes	Chlamydia trachomatis A/HAR-13		6	6
No Yes	Thermus thermophilus HB8		21	19
No Yes	Desulfitobacterium hafniense DCB-2		59	55
No Yes	Clostridium kluyveri NBRC 12016		26	25
No Yes	Clostridium perfringens SM101		20	18
No Yes	Clostridium perfringens ATCC 13124		26	24
No Yes	Clostridium difficile R20291		21	18
No Yes	Clostridium difficile CD196		21	18
No Yes	Clostridium botulinum F Langeland		27	27
No Yes	Clostridium botulinum E3 Alaska E43		23	21
No Yes	Clostridium botulinum B1 Okra		26	26
No Yes	Clostridium botulinum Ba4 657		25	25
No Yes	Clostridium botulinum B Eklund 17B		27	24
No Yes	Clostridium botulinum A2 Kyoto		25	25
No Yes	Clostridium botulinum A3 Loch Maree		24	24
No Yes	Clostridium botulinum A Hall		24	24
No Yes	Clostridium botulinum A ATCC 19397		24	24
No Yes	Lactobacillus casei BL23		21	18
No Yes	Lactobacillus rhamnosus Lc 705		24	18
No Yes	Lactobacillus johnsonii FI9785		13	12
No Yes	Lactobacillus reuteri JCM 1112		13	12
No Yes	Lactobacillus plantarum JDM1		37	30
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC BAA-365		9	9
No Yes	Lactococcus lactis ssp. lactis KF147		28	22
No Yes	Lactococcus lactis ssp. cremoris MG1363		23	19
No Yes	Lactococcus lactis ssp. cremoris SK11		21	18
No Yes	Streptococcus equi ssp. equi 4047		12	11
No Yes	Streptococcus equi ssp. zooepidemicus		12	11
No Yes	Streptococcus pyogenes MGAS10750		14	13
No Yes	Streptococcus pyogenes MGAS10270		14	13
No Yes	Streptococcus pyogenes MGAS2096		14	13
No Yes	Streptococcus pyogenes MGAS9429		14	13
No Yes	Streptococcus pyogenes MGAS6180		14	13
No Yes	Streptococcus pyogenes NZ131		14	13
No Yes	Streptococcus pyogenes MGAS8232		14	13
No Yes	Streptococcus pyogenes MGAS10394		14	13
No Yes	Streptococcus pyogenes Manfredo		14	13
No Yes	Streptococcus pyogenes MGAS315		14	13
No Yes	Streptococcus pyogenes SSI-1		14	13
No Yes	Streptococcus pyogenes MGAS5005		13	13
No Yes	Streptococcus pneumoniae ATCC 700669		13	11
No Yes	Streptococcus pneumoniae CGSP14		12	11
No Yes	Streptococcus pneumoniae G54		13	12
No Yes	Streptococcus pneumoniae P1031		12	11
No Yes	Streptococcus pneumoniae JJA		13	11
No Yes	Streptococcus pneumoniae 70585		12	11
No Yes	Streptococcus pneumoniae Hungary19A-6		12	11
No Yes	Streptococcus pneumoniae Taiwan19F-14		12	11
No Yes	Streptococcus pneumoniae D39		14	12
No Yes	Streptococcus pneumoniae R6 (Non-virulent)		14	12
No Yes	Streptococcus agalactiae A909		19	17
No Yes	Streptococcus agalactiae 2603V/R		21	19
No Yes	Streptococcus mutans NN2025		14	13
No Yes	Streptococcus thermophilus LMD-9		11	10
No Yes	Streptococcus thermophilus CNRZ1066 (Younger strain)		11	10
No Yes	Streptococcus suis BM407		19	16
No Yes	Streptococcus suis SC84		19	16
No Yes	Streptococcus suis 98HAH33		19	16
No Yes	Streptococcus suis P1/7		19	16
No Yes	Listeria monocytogenes 08-5578		21	19
No Yes	Listeria monocytogenes 08-5923		21	19
No Yes	Listeria monocytogenes Clip80459		22	20
No Yes	Listeria monocytogenes HCC23		21	19
No Yes	Listeria monocytogenes 4b F2365		21	19
No Yes	Geobacillus sp. Y412MC61		31	27
No Yes	Geobacillus sp. Y412MC10		60	52
No Yes	Bacillus licheniformis ATCC 14580		36	30
No Yes	Bacillus cytotoxicus NVH 391-98		29	25
No Yes	Bacillus thuringiensis Al Hakam		45	38
No Yes	Bacillus cereus 03BB102		45	38
No Yes	Bacillus cereus AH820		43	37
No Yes	Bacillus cereus AH187		42	38
No Yes	Bacillus cereus B4264		42	36
No Yes	Bacillus cereus G9842		41	36
No Yes	Bacillus cereus Q1		39	35
No Yes	Bacillus cereus E33L		45	39
No Yes	Bacillus cereus ATCC 10987		35	32
No Yes	Bacillus anthracis A0248		42	37
No Yes	Bacillus anthracis CDC 684		44	39
No Yes	Bacillus anthracis Sterne		44	39
No Yes	Bacillus anthracis Ames		41	36
No Yes	Bacillus megaterium DSM319		52	47
No Yes	Staphylococcus epidermidis ATCC 12228		39	33
No Yes	Staphylococcus aureus RF122		31	26
No Yes	Staphylococcus aureus ssp. aureus ED98		30	25
No Yes	Staphylococcus aureus ssp. aureus Newman		32	27
No Yes	Staphylococcus aureus ssp. aureus Mu3		32	27
No Yes	Staphylococcus aureus ssp. aureus USA300_TCH1516		30	26
No Yes	Staphylococcus aureus ssp. aureus USA300_FPR3757		30	26
No Yes	Staphylococcus aureus ssp. aureus JH1		31	26
No Yes	Staphylococcus aureus ssp. aureus JH9		31	26
No Yes	Staphylococcus aureus ssp. aureus MSSA476		32	27
No Yes	Staphylococcus aureus ssp. aureus MRSA252		29	25
No Yes	Staphylococcus aureus ssp. aureus MW2		32	27
No Yes	Staphylococcus aureus ssp. aureus N315		31	26
No Yes	Staphylococcus aureus ssp. aureus Mu50		32	27
No Yes	Staphylococcus aureus ssp. aureus COL		32	27
No Yes	Campylobacter jejuni RM1221		9	9
No Yes	Campylobacter jejuni ssp. jejuni 81116		11	11
No Yes	Campylobacter jejuni ssp. jejuni 81-176		9	9
No Yes	Campylobacter jejuni ssp. doylei 269.97		7	7
No Yes	Helicobacter pylori B38		5	5
No Yes	Helicobacter pylori P12		6	5
No Yes	Helicobacter pylori G27		5	5
No Yes	Helicobacter pylori Shi470		5	5
No Yes	Helicobacter pylori HPAG1		5	5
No Yes	Helicobacter pylori J99		5	5
No Yes	Desulfovibrio vulgaris DP4		28	27
No Yes	Desulfovibrio vulgaris Miyazaki F		27	25
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans ATCC 27774		23	20
No Yes	Geobacter sp. M21		20	19
No Yes	Anaeromyxobacter sp. K		31	30
No Yes	Anaeromyxobacter dehalogenans 2CP-1		32	30
No Yes	Azoarcus sp. BH72		51	47
No Yes	Neisseria meningitidis alpha14		16	15
No Yes	Neisseria meningitidis 053442		15	14
No Yes	Neisseria meningitidis FAM18		15	15
No Yes	Neisseria meningitidis MC58		17	16
No Yes	Neisseria gonorrhoeae NCCP11945		17	16
No Yes	Ralstonia eutropha H16		91	84
No Yes	Ralstonia pickettii 12D		55	50
No Yes	Polynucleobacter necessarius ssp. necessarius STIR1		17	15
No Yes	Burkholderia sp. CCGE1002		94	88
No Yes	Burkholderia pseudomallei MSHR346		29	27
No Yes	Burkholderia pseudomallei 1106a		72	65
No Yes	Burkholderia pseudomallei 668		76	67
No Yes	Burkholderia pseudomallei 1710b		74	66
No Yes	Burkholderia mallei NCTC 10229		57	50
No Yes	Burkholderia mallei NCTC 10247		57	50
No Yes	Burkholderia mallei SAVP1		54	46
No Yes	Burkholderia ambifaria MC40-6		99	92
No Yes	Burkholderia cenocepacia MC0-3		112	104
No Yes	Burkholderia cenocepacia HI2424		104	97
No Yes	Burkholderia cenocepacia J2315		112	103
No Yes	Burkholderia multivorans ATCC 17616		95	88
No Yes	Caulobacter crescentus NA1000		52	49
No Yes	Zymomonas mobilis ssp. mobilis NCIMB 11163		13	12
No Yes	Rhodobacter sphaeroides KD131		55	51
No Yes	Rhodobacter sphaeroides ATCC 17025		32	32
No Yes	Rhodobacter sphaeroides ATCC 17029		49	46
No Yes	Gluconacetobacter diazotrophicus PAl 5		39	38
No Yes	Ehrlichia ruminantium Gardel		8	8
No Yes	Ehrlichia ruminantium Welgevonden		8	8
No Yes	Anaplasma marginale Florida		8	7
No Yes	Orientia tsutsugamushi Ikeda		7	6
No Yes	Rickettsia bellii OSU 85-389		7	7
No Yes	Rickettsia rickettsii Iowa		7	7
No Yes	Methylobacterium extorquens DM4		55	51
No Yes	Methylobacterium extorquens AM1		57	53
No Yes	Brucella suis ATCC 23445		38	38
No Yes	Brucella melitensis ATCC 23457		32	31
No Yes	Brucella abortus S19		38	38
No Yes	Brucella melitensis biov. Abortus 2308		33	33
No Yes	Rhizobium etli CIAT 652		45	41
No Yes	Rhizobium leguminosarum bv. trifolii WSM2304		43	41
No Yes	Rhizobium leguminosarum bv. trifolii WSM1325		44	41
No Yes	Rhodopseudomonas palustris TIE-1		57	53
No Yes	Rhodopseudomonas palustris HaA2		68	62
No Yes	Rhodopseudomonas palustris BisB5		53	47
No Yes	Rhodopseudomonas palustris BisB18		49	44
No Yes	Rhodopseudomonas palustris BisA53		58	51
No Yes	Bradyrhizobium sp. BTAi1		106	98
No Yes	Acidithiobacillus ferrooxidans ATCC 53993		36	31
No Yes	Haemophilus somnus 2336		14	14
No Yes	Haemophilus influenzae PittGG		6	6
No Yes	Haemophilus influenzae PittEE		11	10
No Yes	Haemophilus influenzae 86-028NP		12	11
No Yes	Actinobacillus pleuropneumoniae ser. 3 JL03		16	15
No Yes	Actinobacillus pleuropneumoniae ser. 7 AP76		16	15
No Yes	Vibrio fischeri MJ11		34	28
No Yes	Vibrio vulnificus CMCP6 (Poor annotation)		39	36
No Yes	Vibrio cholerae M66-2		28	25
No Yes	Vibrio cholerae O395		28	25
No Yes	Vibrio cholerae MJ-1236		28	25
No Yes	Shewanella sp. W3-18-1		34	31
No Yes	Shewanella sp. ANA-3		31	30
No Yes	Shewanella baltica OS223		36	35
No Yes	Shewanella baltica OS185		42	39
No Yes	Shewanella baltica OS195		38	36
No Yes	Shewanella sp. MR-4		30	29
No Yes	Stenotrophomonas maltophilia K279a		40	39
No Yes	Xylella fastidiosa M23		13	13
No Yes	Xylella fastidiosa M12		13	13
No Yes	Xylella fastidiosa Temecula1		13	13
No Yes	Xanthomonas campestris pv. vesicatoria 85-10 (Completed 2005)		51	49
No Yes	Xanthomonas oryzae pv. oryzae PXO99A		38	36
No Yes	Xanthomonas oryzae pv. oryzae MAFF 311018		37	35
No Yes	Xanthomonas campestris pv. campestris B100		46	43
No Yes	Xanthomonas campestris pv. campestris 8004 (Completed 2005)		46	43
No Yes	Thioalkalivibrio sp. K90mix		20	18
No Yes	Coxiella burnetii CbuK_Q154		18	16
No Yes	Coxiella burnetii CbuG_Q212		18	16
No Yes	Coxiella burnetii Dugway 5J108-111		21	18
No Yes	Coxiella burnetii RSA 331		17	16
No Yes	Legionella pneumophila Corby		25	23
No Yes	Legionella pneumophila Paris		26	24
No Yes	Legionella pneumophila Lens		28	25
No Yes	Dickeya dadantii Ech586		32	30
No Yes	Candidatus Blochmannia pennsylvanicus BPEN		8	8
No Yes	Buchnera aphidicola Cc		3	3
No Yes	Buchnera aphidicola Bp		4	3
No Yes	Buchnera aphidicola Tuc7		4	3
No Yes	Buchnera aphidicola 5A		4	3
No Yes	Buchnera aphidicola Sg		3	3
No Yes	Yersinia pseudotuberculosis PB1/+		32	27
No Yes	Yersinia pseudotuberculosis YPIII		31	26
No Yes	Yersinia pseudotuberculosis IP 31758		32	27
No Yes	Yersinia pestis Z176003		32	27
No Yes	Yersinia pestis Pestoides F		32	27
No Yes	Yersinia pestis Nepal516		32	27
No Yes	Yersinia pestis Antiqua		32	27
No Yes	Yersinia pestis Angola		26	23
No Yes	Yersinia pestis biov. Microtus 91001		32	27
No Yes	Yersinia pestis KIM		31	26
No Yes	Shigella flexneri 5 8401		33	31
No Yes	Shigella flexneri 2a 301		30	28
No Yes	Shigella boydii CDC 3083-94		31	29
No Yes	Salmonella enterica ssp. arizonae ser. 62:z4,z23:--		32	29
No Yes	Salmonella enterica ssp. enterica ser. Schwarzengrund CVM19633		34	32
No Yes	Salmonella enterica ssp. enterica ser. Enteritidis P125109		33	31
No Yes	Salmonella enterica ssp. enterica ser. Choleraesuis str. SC-B67		32	30
No Yes	Salmonella enterica ssp. enterica ser. Newport SL254		33	31
No Yes	Salmonella enterica ssp. enterica ser. Dublin CT_02021853		31	29
No Yes	Salmonella enterica ssp. enterica ser. Typhi CT18		31	29
No Yes	Salmonella enterica ssp. enterica ser. Typhi Ty2		31	29
No Yes	Salmonella enterica ssp. enterica ser. Agona SL483		32	30
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi C RKS4594		30	28
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi B SPB7		35	33
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A AKU_12601		32	30
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A ATCC 9150		32	30
No Yes	Salmonella enterica ssp. enterica ser. Heidelberg SL476		33	31
No Yes	Salmonella enterica ssp. enterica ser. Gallinarum 287/91		31	29
No Yes	Klebsiella pneumoniae 342		53	49
No Yes	Klebsiella pneumoniae NTUH-K2044		50	44
No Yes	Escherichia coli ED1a		37	34
No Yes	Escherichia coli IAI39		39	36
No Yes	Escherichia coli UMN026		36	33
No Yes	Escherichia coli 55989		37	34
No Yes	Escherichia coli S88		35	33
No Yes	Escherichia coli IAI1		35	32
No Yes	Escherichia coli BL21		33	32
No Yes	Escherichia coli ATCC 8739		37	34
No Yes	Escherichia coli BL21(DE3)		37	34
No Yes	Escherichia coli SMS-3-5		40	37
No Yes	Escherichia coli SE11		37	34
No Yes	Escherichia coli APEC O1		38	36
No Yes	Escherichia coli O103:H2 12009		37	34
No Yes	Escherichia coli UTI89		38	36
No Yes	Escherichia coli 536		35	33
No Yes	Escherichia coli HS		36	33
No Yes	Escherichia coli E24377A		37	34
No Yes	Escherichia coli O55:H7 CB9615		37	34
No Yes	Escherichia coli O26:H11 11368		37	34
No Yes	Escherichia coli CFT073		37	35
No Yes	Escherichia coli O111:H- 11128		37	34
No Yes	Escherichia coli O127:H6 E2348/69		35	33
No Yes	Escherichia coli O157:H7 EDL933		37	34
No Yes	Escherichia coli O157:H7 TW14359		37	34
No Yes	Escherichia coli O157:H7 EC4115		37	34
No Yes	Escherichia coli O157:H7 Sakai		37	34
No Yes	Escherichia coli BW2952		32	30
No Yes	Escherichia coli K-12 subW3110		36	33
No Yes	Escherichia coli K-12 subDH10B		36	33
No Yes	Escherichia coli B REL606		37	34
No Yes	Erwinia amylovora CFBP1430		33	33
No Yes	Pseudomonas syringae pv. phaseolicola 1448A		61	60
No Yes	Pseudomonas syringae pv. syringae B728a		62	58
No Yes	Pseudomonas putida W619		72	67
No Yes	Pseudomonas putida F1		74	69
No Yes	Pseudomonas putida GB-1		87	81
No Yes	Pseudomonas fluorescens SBW25		82	75
No Yes	Pseudomonas fluorescens Pf0-1		79	74
No Yes	Pseudomonas aeruginosa LESB58		85	81
No Yes	Pseudomonas aeruginosa PA7		75	71
No Yes	Pseudomonas aeruginosa UCBPP-PA14		82	77
No Yes	Acinetobacter baumannii AB307-0294		59	52
No Yes	Acinetobacter baumannii AYE		63	55
No Yes	Acinetobacter baumannii SDF		30	26
No Yes	Acinetobacter baumannii AB0057		64	56
No Yes	Acinetobacter baumannii ACICU		60	52
No Yes	Francisella novicida U112		21	20
No Yes	Francisella tularensis ssp. mediasiatica FSC147		15	15
No Yes	Francisella tularensis ssp. holarctica FTNF002-00		17	16
No Yes	Francisella tularensis ssp. holarctica OSU18		16	15
No Yes	Francisella tularensis ssp. holarctica		23	21
No Yes	Francisella tularensis ssp. tularensis WY96-3418		18	17
No Yes	Francisella tularensis ssp. tularensis FSC198		16	15
No Yes	Prochlorococcus marinus NATL1A		24	23
No Yes	Prochlorococcus marinus MIT 9301		26	25
No Yes	Prochlorococcus marinus MIT 9515		24	23
No Yes	Prochlorococcus marinus AS9601		26	25
No Yes	Prochlorococcus marinus ssp. marinus CCMP1375		23	22
No Yes	Prochlorococcus marinus ssp. pastoris CCMP1986		25	24
No Yes	Prochlorococcus marinus MIT 9215		27	26
No Yes	Prochlorococcus marinus MIT 9211		22	21
No Yes	Prochlorococcus marinus MIT 9312		25	24
No Yes	Prochlorococcus marinus MIT 9303		36	32
No Yes	Prochlorococcus marinus NATL2A		24	23
No Yes	Cyanothece sp. PCC 8802		47	42
No Yes	Cyanothece sp. PCC 7425		52	47
No Yes	Cyanothece sp. PCC 7424		60	50
No Yes	Cyanothece sp. PCC 8801		46	41
No Yes	Synechococcus sp. JA-2-3Ba(2-13) (Poor annotation)		32	30
No Yes	Synechococcus sp. JA-3-3Ab (Poor annotation)		28	26
No Yes	Synechococcus sp. CC9902 (Poor annotation)		34	32
No Yes	Synechococcus sp. RCC307		33	32
No Yes	Synechococcus sp. CC9605 (Poor annotation)		37	34
No Yes	Synechococcus sp. WH 8102 (Good annotation)		35	32
No Yes	Synechococcus sp. CC9311		38	34
No Yes	Synechococcus sp. WH 7803		36	33
No Yes	Synechococcus sp. PCC 7002		31	29
No Yes	Synechococcus elongatus PCC 7942		39	35
No Yes	Methanococcus maripaludis C6		13	11
No Yes	Methanococcus maripaludis C7		14	12
No Yes	Methanococcus maripaludis C5		15	13
No Yes	Sulfolobus islandicus Y.G.57.14		38	31
No Yes	Sulfolobus islandicus L.S.2.15		35	29
No Yes	Sulfolobus islandicus M.16.27		36	30
No Yes	Sulfolobus islandicus M.14.25		35	30
No Yes	Sulfolobus islandicus M.16.4		36	31
No Yes	Sulfolobus islandicus L.D.8.5		36	30
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	67	57
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		178	176
No Yes	Lotus japonicus (Early assembly)		11	9
No Yes	Prunus persica (Early draft)	Peach	144	123
No Yes	Manihot esculenta (Early draft)	Cassava	204	170
No Yes	Ricinus communis (Early assembly)	Castor bean	185	157
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	179	147
No Yes	Phoenix dactylifera (Early draft)	Date palm	97	84
No Yes	Trypanosoma vivax (Parial)		35	31
No Yes	Trypanosoma congolense (Partial)		49	42
No Yes	Toxoplasma gondii GT1 (Early assembly)		35	29
No Yes	Toxoplasma gondii VEG (Early assembly)		36	29
No Yes	Toxoplasma gondii RH (Archived)		36	29
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	70	58
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	67	55
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	53	48
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	63	54
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	62	54
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	68	55
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	56	47
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	53	44
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	50	43
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	67	56
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	73	59
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	56	48
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	61	51
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	67	56
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	54	45
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	56	48
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	58	47
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	61	54
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	66	55
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	39	35
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	62	53
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	66	54
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	56	50
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	61	53
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	58	48
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	58	51
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	44	38
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	58	50
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	56	48
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	50	45
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	59	51
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	50	44
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	64	53
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	79	62
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	64	53
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	74	62
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	66	56
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	54	47
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	56	48
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	79	65
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	69	57
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	71	56
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	68	57
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	76	65
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	79	61
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		58	47
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		78	66
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	53	46
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	99	79
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	60	53
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	73	62
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	66	58
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	55	45
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	55	45
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	165	126
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	251	201
No Yes	NCBI viral sequences (Viral)		14	14
No Yes	PDB chains (SCOP 1.73) (PDB)		173	139
No Yes	TargetDB (Targets)		2783	2525
No Yes	UniProt 15.0 (UniProt)		57858	52055
No Yes	UniProt 15.0 viral sequences (Viral)		16	16