Thioredoxin-like superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		123310	123310
No Yes	Homo sapiens 49_36k (all transcripts)	Human	308	260
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	201	168
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	116	91
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	168	135
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	224	183
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	301	236
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	106	84
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	118	89
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	106	84
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	216	182
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	217	186
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	96	74
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	126	102
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	143	112
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	124	101
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	135	110
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	117	94
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	127	103
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	199	159
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	100	77
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	140	109
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	189	149
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	98	75
No Yes	Equus caballus 49_2 (all transcripts)	Horse	164	125
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	106	82
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	140	108
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	94	72
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	101	83
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	123	100
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	96	77
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	112	88
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	106	84
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	112	86
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	171	135
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	142	116
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	139	106
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	118	93
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	122	97
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	135	106
No Yes	Xenopus laevis	African clawed frog	349	271
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	148	121
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	215	158
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	220	160
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	182	139
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	148	114
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	298	207
No Yes	Branchiostoma floridae 1.0	Florida lancelet	339	273
No Yes	Ciona savignyi 49_2f (all transcripts)		139	98
No Yes	Ciona intestinalis 49_2i (all transcripts)		176	132
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	294	255
No Yes	Helobdella robusta		101	75
No Yes	Capitella sp. I		157	127
No Yes	Bombyx mori	Domestic silkworm	88	71
No Yes	Nasonia vitripennis	Jewel wasp	93	70
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	153	125
No Yes	Drosophila grimshawi 1.3		133	107
No Yes	Drosophila willistoni 1.3		147	123
No Yes	Drosophila pseudoobscura 2.3		135	110
No Yes	Drosophila persimilis 1.3		128	106
No Yes	Drosophila yakuba 1.3		144	121
No Yes	Drosophila simulans 1.3		131	110
No Yes	Drosophila sechellia 1.3		132	111
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	192	149
No Yes	Drosophila erecta 1.3		137	115
No Yes	Drosophila ananassae 1.3		144	120
No Yes	Drosophila virilis 1.2		130	105
No Yes	Drosophila mojavensis 1.3		121	100
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	131	105
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	130	105
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	130	103
No Yes	Tribolium castaneum 3.0	Red flour beetle	133	102
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	102	78
No Yes	Acyrthosiphon pisum	Pea aphid	99	77
No Yes	Daphnia pulex	Common water flea	131	101
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	131	106
No Yes	Lottia gigantea		134	108
No Yes	Pristionchus pacificus		215	182
No Yes	Meloidogyne incognita	Southern root-knot nematode	106	84
No Yes	Meloidogyne hapla		75	58
No Yes	Brugia malayi	Agent of lymphatic filariasis	38	30
No Yes	Caenorhabditis japonica		124	101
No Yes	Caenorhabditis brenneri		136	111
No Yes	Caenorhabditis remanei		169	142
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	264	204
No Yes	Caenorhabditis briggsae 2		152	127
No Yes	Schistosoma mansoni		79	69
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	170	136
No Yes	Hydra magnipapillata		131	104
No Yes	Trichoplax adhaerens		142	121
No Yes	Proterospongia sp. ATCC 50818		102	77
No Yes	Monosiga brevicollis		88	73
No Yes	Capsaspora owczarzaki ATCC 30864		67	56
No Yes	Malassezia globosa CBS 7966		36	30
No Yes	Ustilago maydis		56	51
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		48	42
No Yes	Melampsora laricis-populina		62	56
No Yes	Sporobolomyces roseus IAM 13481		45	41
No Yes	Serpula lacrymans var. lacrymans S7.9		83	77
No Yes	Coprinopsis cinerea okayama7 130		78	69
No Yes	Pleurotus ostreatus	Oyster mushroom	87	70
No Yes	Laccaria bicolor S238N-H82		68	62
No Yes	Agaricus bisporus var. bisporus		82	77
No Yes	Schizophyllum commune		85	79
No Yes	Heterobasidion annosum		66	61
No Yes	Phanerochaete chrysosporium RP-78 2.1		75	68
No Yes	Postia placenta		113	104
No Yes	Tremella mesenterica		51	45
No Yes	Cryptococcus neoformans JEC21		48	44
No Yes	Magnaporthe grisea 70-15		67	60
No Yes	Podospora anserina		71	65
No Yes	Sporotrichum thermophile ATCC 42464		64	58
No Yes	Thielavia terrestris NRRL 8126		73	65
No Yes	Chaetomium globosum CBS 148.51		60	54
No Yes	Neurospora tetrasperma		66	58
No Yes	Neurospora discreta FGSC 8579		62	54
No Yes	Neurospora crassa OR74A		62	54
No Yes	Cryphonectria parasitica	Chestnut blight fungus	88	76
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		96	89
No Yes	Nectria haematococca mpVI		110	100
No Yes	Fusarium verticillioides 7600		93	86
No Yes	Fusarium graminearum		89	82
No Yes	Trichoderma atroviride		102	95
No Yes	Trichoderma reesei 1.2		80	74
No Yes	Trichoderma virens Gv29-8		108	100
No Yes	Verticillium dahliae VdLs.17		68	58
No Yes	Verticillium albo-atrum VaMs.102		61	54
No Yes	Botrytis cinerea B05.10		69	62
No Yes	Sclerotinia sclerotiorum		70	63
No Yes	Alternaria brassicicola		75	67
No Yes	Pyrenophora tritici-repentis		72	66
No Yes	Cochliobolus heterostrophus		74	66
No Yes	Stagonospora nodorum		94	81
No Yes	Mycosphaerella fijiensis CIRAD86		79	71
No Yes	Mycosphaerella graminicola IPO323		91	82
No Yes	Ajellomyces dermatitidis SLH14081		58	50
No Yes	Histoplasma capsulatum class NAmI strain WU24		60	52
No Yes	Microsporum gypseum		69	61
No Yes	Arthroderma benhamiae CBS 112371		60	52
No Yes	Microsporum canis CBS 113480		69	61
No Yes	Trichophyton equinum CBS 127.97		60	55
No Yes	Trichophyton verrucosum HKI 0517		57	50
No Yes	Trichophyton tonsurans CBS 112818		64	56
No Yes	Trichophyton rubrum CBS 118892		66	58
No Yes	Paracoccidioides brasiliensis Pb18		55	47
No Yes	Coccidioides posadasii RMSCC 3488		58	51
No Yes	Coccidioides immitis RS		60	52
No Yes	Uncinocarpus reesii 1704		51	44
No Yes	Aspergillus fumigatus Af293		84	77
No Yes	Neosartorya fischeri NRRL 181		89	82
No Yes	Penicillium chrysogenum Wisconsin 54-1255		83	75
No Yes	Penicillium marneffei ATCC 18224		97	89
No Yes	Aspergillus carbonarius ITEM 5010		89	81
No Yes	Aspergillus terreus NIH2624		83	76
No Yes	Aspergillus oryzae RIB40		89	81
No Yes	Aspergillus niger ATCC 1015		54	52
No Yes	Aspergillus flavus NRRL3357		103	95
No Yes	Aspergillus clavatus NRRL 1		76	69
No Yes	Aspergillus nidulans FGSC A4		84	77
No Yes	Tuber melanosporum Vittad	Perigord truffle	55	50
No Yes	Candida dubliniensis CD36		59	54
No Yes	Candida tropicalis MYA-3404		59	52
No Yes	Candida parapsilosis		48	42
No Yes	Candida albicans SC5314		56	51
No Yes	Yarrowia lipolytica CLIB122		55	49
No Yes	Candida lusitaniae ATCC 42720		43	37
No Yes	Vanderwaltozyma polyspora DSM 70294		46	40
No Yes	Candida glabrata CBS138		46	39
No Yes	Kluyveromyces thermotolerans CBS 6340		40	36
No Yes	Lachancea kluyveri		43	38
No Yes	Kluyveromyces waltii		40	36
No Yes	Lodderomyces elongisporus NRRL YB-4239		49	45
No Yes	Ashbya gossypii ATCC 10895		40	36
No Yes	Debaromyces hansenii		54	48
No Yes	Zygosaccharomyces rouxii		42	37
No Yes	Saccharomyces mikatae MIT		46	38
No Yes	Saccharomyces paradoxus MIT		51	42
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	52	43
No Yes	Saccharomyces bayanus MIT		51	42
No Yes	Candida guilliermondii ATCC 6260		60	54
No Yes	Pichia stipitis CBS 6054		53	47
No Yes	Pichia pastoris GS115		47	42
No Yes	Kluyveromyces lactis		43	39
No Yes	Schizosaccharomyces octosporus yFS286		41	35
No Yes	Schizosaccharomyces japonicus yFS275		39	33
No Yes	Schizosaccharomyces pombe	Fission yeast	43	36
No Yes	Allomyces macrogynus ATCC 38327		111	93
No Yes	Rhizopus oryzae RA 99-880		87	72
No Yes	Phycomyces blakesleeanus		73	65
No Yes	Mucor circinelloides		85	73
No Yes	Encephalitozoon intestinalis		12	10
No Yes	Encephalitozoon cuniculi		12	10
No Yes	Spizellomyces punctatus DAOM BR117		73	64
No Yes	Batrachochytrium dendrobatidis JEL423		49	41
No Yes	Dictyostelium discoideum		93	82
No Yes	Dictyostelium purpureum		88	78
No Yes	Entamoeba dispar		63	57
No Yes	Entamoeba invadens		85	73
No Yes	Entamoeba histolytica 1		65	56
No Yes	Arabidopsis lyrata	Lyrate rockcress	282	254
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	322	286
No Yes	Carica papaya	Papaya	177	156
No Yes	Medicago truncatula	Barrel medic	182	171
No Yes	Glycine max	Soybean	457	414
No Yes	Cucumis sativus	Cucumber	306	273
No Yes	Populus trichocarpa 1.1	Black cottonwood	370	328
No Yes	Vitis vinifera	Wine grape	276	244
No Yes	Brachypodium distachyon		333	296
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	364	327
No Yes	Zea mays subsp. mays	Maize	468	415
No Yes	Sorghum bicolor	Sorghum	283	255
No Yes	Selaginella moellendorffii		342	311
No Yes	Physcomitrella patens subsp. patens		216	180
No Yes	Coccomyxa sp. C-169		103	96
No Yes	Chlorella sp. NC64A		112	105
No Yes	Chlorella vulgaris		106	99
No Yes	Volvox carteri f. nagariensis		104	96
No Yes	Chlamydomonas reinhardtii 4.0		120	111
No Yes	Ostreococcus sp. RCC809		85	78
No Yes	Ostreococcus lucimarinus CCE9901		91	83
No Yes	Ostreococcus tauri		81	73
No Yes	Micromonas sp. RCC299		114	104
No Yes	Micromonas pusilla CCMP1545		115	105
No Yes	Cyanidioschyzon merolae		49	45
No Yes	Giardia lamblia		26	25
No Yes	Trypanosoma cruzi strain CL Brener		113	106
No Yes	Trypanosoma brucei		57	54
No Yes	Leishmania mexicana		60	56
No Yes	Leishmania major strain Friedlin		64	60
No Yes	Leishmania infantum JPCM5		60	56
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		58	53
No Yes	Aureococcus anophagefferens		135	126
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	114	100
No Yes	Phytophthora sojae 1.1		121	105
No Yes	Phytophthora infestans T30-4		115	102
No Yes	Phytophthora capsici		138	122
No Yes	Phaeodactylum tricornutum		108	103
No Yes	Fragilariopsis cylindrus		222	215
No Yes	Thalassiosira pseudonana		118	115
No Yes	Paramecium tetraurelia		225	171
No Yes	Tetrahymena thermophila SB210 1		164	146
No Yes	Babesia bovis T2Bo		35	29
No Yes	Theileria parva		29	23
No Yes	Theileria annulata		33	27
No Yes	Plasmodium falciparum 3D7		47	41
No Yes	Plasmodium vivax SaI-1		49	42
No Yes	Plasmodium knowlesi strain H		48	42
No Yes	Plasmodium yoelii ssp. yoelii 1		42	36
No Yes	Plasmodium chabaudi		48	44
No Yes	Plasmodium berghei ANKA		50	45
No Yes	Cryptosporidium hominis		28	22
No Yes	Cryptosporidium muris		38	29
No Yes	Cryptosporidium parvum Iowa II		32	24
No Yes	Neospora caninum Nc-Liverpool		64	45
No Yes	Neospora caninum		60	42
No Yes	Toxoplasma gondii ME49		65	48
No Yes	Naegleria gruberi		103	92
No Yes	Trichomonas vaginalis		180	145
No Yes	Guillardia theta		1	1
No Yes	Emiliania huxleyi CCMP1516		321	313
No Yes	Candidatus Phytoplasma mali		2	2
No Yes	Aster yellows witches-broom phytoplasma AYWB		1	1
No Yes	Onion yellows phytoplasma OY-M		2	2
No Yes	Acholeplasma laidlawii PG-8A		10	9
No Yes	Mesoplasma florum L1		1	1
No Yes	Ureaplasma parvum ser. 3 ATCC 700970		3	3
No Yes	Ureaplasma urealyticum ser. 10 ATCC 33699		3	3
No Yes	Mycoplasma mycoides ssp. mycoides SC PG1		2	2
No Yes	Mycoplasma capricolum ssp. capricolum ATCC 27343		2	2
No Yes	Mycoplasma crocodyli MP145		3	3
No Yes	Mycoplasma conjunctivae		3	3
No Yes	Mycoplasma penetrans HF-2		6	6
No Yes	Mycoplasma mobile 163K		5	5
No Yes	Mycoplasma arthritidis 158L3-1		4	3
No Yes	Mycoplasma agalactiae PG2		3	3
No Yes	Mycoplasma synoviae 53		3	3
No Yes	Mycoplasma pulmonis UAB CTIP		3	3
No Yes	Mycoplasma pneumoniae M129		2	2
No Yes	Mycoplasma hyopneumoniae 232		3	3
No Yes	Mycoplasma hominis		1	1
No Yes	Mycoplasma genitalium G37		2	2
No Yes	Mycoplasma gallisepticum R		3	3
No Yes	Aminobacterium colombiense DSM 12261		12	12
No Yes	Thermanaerovibrio acidaminovorans DSM 6589		12	12
No Yes	Brachyspira hyodysenteriae WA1		16	16
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis L550		28	28
No Yes	Leptospira interrogans ser. Lai 56601		33	33
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Paris)		41	40
No Yes	Treponema pallidum ssp. pallidum Nichols		4	4
No Yes	Treponema denticola ATCC 35405		7	7
No Yes	Borrelia garinii PBi		1	1
No Yes	Borrelia afzelii PKo		1	1
No Yes	Borrelia burgdorferi B31		1	1
No Yes	Borrelia recurrentis A1		1	1
No Yes	Borrelia duttonii Ly		1	1
No Yes	Borrelia turicatae 91E135		1	1
No Yes	Borrelia hermsii DAH		2	2
No Yes	Rhodopirellula baltica SH 1		41	41
No Yes	Pirellula staleyi DSM 6068		38	37
No Yes	Gardnerella vaginalis 409-05		9	8
No Yes	Bifidobacterium longum NCC2705		9	8
No Yes	Bifidobacterium animalis ssp. lactis AD011		8	7
No Yes	Bifidobacterium dentium Bd1		4	4
No Yes	Bifidobacterium adolescentis ATCC 15703		3	3
No Yes	Kineococcus radiotolerans SRS30216		20	20
No Yes	Catenulispora acidiphila DSM 44928		37	37
No Yes	Stackebrandtia nassauensis DSM 44728		22	22
No Yes	Acidothermus cellulolyticus 11B		13	13
No Yes	Nakamurella multipartita DSM 44233		19	19
No Yes	Geodermatophilus obscurus DSM 43160		22	22
No Yes	Frankia sp. CcI3		16	16
No Yes	Frankia alni ACN14a		27	27
No Yes	Thermobifida fusca YX		19	19
No Yes	Thermomonospora curvata DSM 43183		20	20
No Yes	Streptosporangium roseum DSM 43021		38	38
No Yes	Streptomyces griseus ssp. griseus NBRC 13350		32	32
No Yes	Streptomyces avermitilis MA-4680		30	30
No Yes	Streptomyces scabiei 87.22		30	30
No Yes	Streptomyces coelicolor A3(2)		32	32
No Yes	Actinosynnema mirum DSM 43827		25	25
No Yes	Saccharomonospora viridis DSM 43017		24	23
No Yes	Saccharopolyspora erythraea NRRL 2338		26	26
No Yes	Kribbella flavida DSM 17836		29	29
No Yes	Nocardioides sp. JS614		37	37
No Yes	Propionibacterium acnes KPA171202		15	14
No Yes	Salinispora arenicola CNS-205		23	23
No Yes	Salinispora tropica CNB-440		25	25
No Yes	Gordonia bronchialis DSM 43247		29	29
No Yes	Rhodococcus jostii RHA1		33	32
No Yes	Rhodococcus opacus B4		31	30
No Yes	Rhodococcus erythropolis PR4		26	26
No Yes	Nocardia farcinica IFM 10152		26	26
No Yes	Mycobacterium abscessus		30	30
No Yes	Mycobacterium sp. MCS		28	28
No Yes	Mycobacterium avium ssp. paratuberculosis K-10		22	22
No Yes	Mycobacterium vanbaalenii PYR-1		37	37
No Yes	Mycobacterium tuberculosis H37Rv		26	26
No Yes	Mycobacterium bovis AF2122/97		26	26
No Yes	Mycobacterium ulcerans Agy99		31	31
No Yes	Mycobacterium gilvum PYR-GCK		34	34
No Yes	Mycobacterium marinum M		33	33
No Yes	Mycobacterium smegmatis MC2 155		31	31
No Yes	Mycobacterium leprae TN		13	13
No Yes	Corynebacterium aurimucosum		18	18
No Yes	Corynebacterium kroppenstedtii DSM 44385		13	13
No Yes	Corynebacterium efficiens YS-314		18	18
No Yes	Corynebacterium urealyticum DSM 7109		13	12
No Yes	Corynebacterium jeikeium K411		14	13
No Yes	Corynebacterium glutamicum ATCC 13032 Kitasato		22	22
No Yes	Corynebacterium diphtheriae NCTC 13129		19	19
No Yes	Tropheryma whipplei Twist		5	5
No Yes	Sanguibacter keddieii DSM 10542		22	22
No Yes	Kytococcus sedentarius DSM 20547		19	18
No Yes	Beutenbergia cavernae DSM 12333		18	18
No Yes	Leifsonia xyli ssp. xyli CTCB07		14	14
No Yes	Clavibacter michiganensis ssp. michiganensis NCPPB 382		18	18
No Yes	Jonesia denitrificans DSM 20603		20	20
No Yes	Brachybacterium faecium DSM 4810		17	17
No Yes	Xylanimonas cellulosilytica DSM 15894		18	18
No Yes	Kocuria rhizophila DC2201		17	17
No Yes	Rothia mucilaginosa DY-18		15	15
No Yes	Arthrobacter sp. FB24		21	21
No Yes	Arthrobacter chlorophenolicus A6		21	21
No Yes	Arthrobacter aurescens TC1		21	21
No Yes	Renibacterium salmoninarum ATCC 33209		19	19
No Yes	Micrococcus luteus NCTC 2665		18	18
No Yes	Cryptobacterium curtum DSM 15641		7	7
No Yes	Eggerthella lenta DSM 2243		8	8
No Yes	Slackia heliotrinireducens DSM 20476		15	14
No Yes	Atopobium parvulum DSM 20469		8	7
No Yes	Conexibacter woesei DSM 14684		40	40
No Yes	Rubrobacter xylanophilus DSM 9941		23	23
No Yes	Acidimicrobium ferrooxidans DSM 10331		14	14
No Yes	Denitrovibrio acetiphilus DSM 12809		17	17
No Yes	Deferribacter desulfuricans SSM1		16	16
No Yes	Kosmotoga olearia TBF 19.5.1		15	14
No Yes	Petrotoga mobilis SJ95		12	11
No Yes	Fervidobacterium nodosum Rt17-B1		18	17
No Yes	Thermosipho melanesiensis BI429		20	19
No Yes	Thermosipho africanus TCF52B		18	17
No Yes	Thermotoga lettingae TMO		17	16
No Yes	Thermotoga sp. RQ2		17	16
No Yes	Thermotoga naphthophila RKU-10		17	16
No Yes	Thermotoga petrophila RKU-1		17	16
No Yes	Thermotoga neapolitana DSM 4359		17	16
No Yes	Thermotoga maritima MSB8		16	15
No Yes	Dehalococcoides sp. CBDB1		11	11
No Yes	Dehalococcoides ethenogenes 195		13	13
No Yes	Thermomicrobium roseum DSM 5159		16	16
No Yes	Sphaerobacter thermophilus DSM 20745		27	26
No Yes	Herpetosiphon aurantiacus ATCC 23779		30	30
No Yes	Roseiflexus sp. RS-1		33	31
No Yes	Roseiflexus castenholzii DSM 13941		30	29
No Yes	Chloroflexus sp. Y-400-fl		35	34
No Yes	Chloroflexus aggregans DSM 9485		37	35
No Yes	Chloroflexus aurantiacus J-10-fl		35	34
No Yes	Sulfurihydrogenibium sp. YO3AOP1		24	23
No Yes	Sulfurihydrogenibium azorense Az-Fu1		19	19
No Yes	Persephonella marina EX-H1		20	19
No Yes	Hydrogenobaculum sp. Y04AAS1		21	20
No Yes	Thermocrinis albus DSM 14484		22	21
No Yes	Aquifex aeolicus VF5		23	22
No Yes	Hydrogenobacter thermophilus TK-6		29	28
No Yes	Gemmatimonas aurantiaca T-27		26	26
No Yes	Fibrobacter succinogenes ssp. succinogenes S85		13	13
No Yes	Candidatus Koribacter versatilis Ellin345		31	31
No Yes	Candidatus Solibacter usitatus Ellin6076		56	53
No Yes	Acidobacterium capsulatum ATCC 51196		23	23
No Yes	Elusimicrobium minutum Pei191		9	9
No Yes	uncultured Termite group 1 bacterium phylotype Rs-D17		4	4
No Yes	Pelodictyon phaeoclathratiforme BU-1		17	17
No Yes	Pelodictyon luteolum DSM 273		15	15
No Yes	Chlorobium chlorochromatii CaD3		14	14
No Yes	Chlorobium phaeobacteroides DSM 266		16	16
No Yes	Chlorobium phaeovibrioides DSM 265		15	15
No Yes	Chlorobium limicola DSM 245		17	17
No Yes	Chlorobaculum parvum NCIB 8327		17	17
No Yes	Chlorobium tepidum TLS		17	17
No Yes	Chloroherpeton thalassium ATCC 35110		31	31
No Yes	Prosthecochloris aestuarii DSM 271		13	13
No Yes	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2		2	2
No Yes	Prevotella ruminicola 23		19	19
No Yes	Parabacteroides distasonis ATCC 8503		26	25
No Yes	Porphyromonas gingivalis W83		16	15
No Yes	Bacteroides vulgatus ATCC 8482		33	32
No Yes	Bacteroides thetaiotaomicron VPI-5482		34	33
No Yes	Bacteroides fragilis NCTC 9343		34	33
No Yes	Candidatus Amoebophilus asiaticus 5a2		3	3
No Yes	Salinibacter ruber DSM 13855		21	21
No Yes	Rhodothermus marinus DSM 4252		23	23
No Yes	Chitinophaga pinensis DSM 2588		87	86
No Yes	Dyadobacter fermentans DSM 18053		42	41
No Yes	Cytophaga hutchinsonii ATCC 33406		32	32
No Yes	Spirosoma linguale DSM 74		53	53
No Yes	Pedobacter heparinus DSM 2366		43	43
No Yes	Zunongwangia profunda SM-A87		45	45
No Yes	Gramella forsetii KT0803		32	32
No Yes	Robiginitalea biformata HTCC2501		22	22
No Yes	Flavobacteriaceae bacterium 3519-10		24	24
No Yes	Capnocytophaga ochracea DSM 7271		16	16
No Yes	Flavobacterium psychrophilum JIP02/86		29	29
No Yes	Flavobacterium johnsoniae UW101		45	45
No Yes	Blattabacterium sp. Bge		3	3
No Yes	Dictyoglomus turgidum DSM 6724		14	13
No Yes	Dictyoglomus thermophilum H-6-12		15	14
No Yes	Candidatus Protochlamydia amoebophila UWE25		15	15
No Yes	Chlamydophila pneumoniae TW-183		7	7
No Yes	Chlamydophila caviae GPIC		7	7
No Yes	Chlamydophila felis Fe/C-56		7	7
No Yes	Chlamydophila abortus S26/3		7	7
No Yes	Chlamydia muridarum Nigg		7	7
No Yes	Chlamydia trachomatis D/UW-3/CX		7	7
No Yes	Coraliomargarita akajimensis DSM 45221		26	25
No Yes	Opitutus terrae PB90-1		32	31
No Yes	Methylacidiphilum infernorum V4		19	19
No Yes	Akkermansia muciniphila ATCC BAA-835		15	15
No Yes	Thermodesulfovibrio yellowstonii DSM 11347		11	11
No Yes	Streptobacillus moniliformis DSM 12112		8	8
No Yes	Sebaldella termitidis ATCC 33386		22	21
No Yes	Leptotrichia buccalis DSM 1135		15	14
No Yes	Fusobacterium nucleatum ssp. nucleatum ATCC 25586		11	10
No Yes	Thermobaculum terrenum ATCC BAA-798		25	23
No Yes	Deinococcus deserti VCD115		21	21
No Yes	Deinococcus geothermalis DSM 11300		17	17
No Yes	Deinococcus radiodurans R1		24	24
No Yes	Meiothermus ruber DSM 1279		22	21
No Yes	Thermus thermophilus HB27 (First sequenced)		18	17
No Yes	Natranaerobius thermophilus JW/NM-WN-LF		16	16
No Yes	Symbiobacterium thermophilum IAM 14863		28	28
No Yes	Anaerococcus prevotii DSM 20548		14	13
No Yes	Finegoldia magna ATCC 29328		16	16
No Yes	Clostridiales genomosp. BVAB3 UPII9-5		9	9
No Yes	Anaerocellum thermophilum DSM 6725		7	7
No Yes	Candidatus Desulforudis audaxviator MP104C		10	10
No Yes	Pelotomaculum thermopropionicum SI		10	10
No Yes	Desulfitobacterium hafniense Y51		23	22
No Yes	Desulfotomaculum reducens MI-1		23	23
No Yes	Desulfotomaculum acetoxidans DSM 771		15	15
No Yes	Eubacterium rectale ATCC 33656		6	6
No Yes	Eubacterium eligens ATCC 27750		1	1
No Yes	Syntrophomonas wolfei ssp. wolfei Goettingen		11	11
No Yes	Heliobacterium modesticaldum Ice1		11	10
No Yes	Alkaliphilus oremlandii OhILAs		21	21
No Yes	Alkaliphilus metalliredigens QYMF		29	29
No Yes	Clostridium phytofermentans ISDg		25	25
No Yes	Clostridium novyi NT		6	6
No Yes	Clostridium kluyveri DSM 555		13	12
No Yes	Clostridium cellulolyticum H10		14	14
No Yes	Clostridium beijerinckii NCIMB 8052		26	25
No Yes	Clostridium thermocellum ATCC 27405		17	16
No Yes	Clostridium tetani E88		8	8
No Yes	Clostridium perfringens 13		15	14
No Yes	Clostridium difficile 630		12	12
No Yes	Clostridium botulinum A ATCC 3502		14	14
No Yes	Clostridium acetobutylicum ATCC 824		12	12
No Yes	Veillonella parvula DSM 2008		6	6
No Yes	Acidaminococcus fermentans DSM 20731		10	10
No Yes	Caldicellulosiruptor saccharolyticus DSM 8903		8	8
No Yes	Coprothermobacter proteolyticus DSM 5265		11	10
No Yes	Carboxydothermus hydrogenoformans Z-2901		12	11
No Yes	Moorella thermoacetica ATCC 39073		11	11
No Yes	Ammonifex degensii KC4		6	6
No Yes	Thermoanaerobacter pseudethanolicus ATCC 33223		14	12
No Yes	Thermoanaerobacter sp. X514		15	13
No Yes	Thermoanaerobacter tengcongensis MB4		14	12
No Yes	Thermoanaerobacter italicus Ab9		11	10
No Yes	Halothermothrix orenii H 168		17	16
No Yes	Enterococcus faecalis V583		18	17
No Yes	Oenococcus oeni PSU-1		7	7
No Yes	Leuconostoc citreum KM20		9	8
No Yes	Leuconostoc mesenteroides ssp. mesenteroides ATCC 8293		12	11
No Yes	Lactobacillus casei ATCC 334		12	12
No Yes	Lactobacillus crispatus ST1		7	7
No Yes	Lactobacillus rhamnosus GG		10	10
No Yes	Lactobacillus johnsonii NCC 533		8	8
No Yes	Lactobacillus salivarius UCC118		8	8
No Yes	Lactobacillus fermentum IFO 3956		12	11
No Yes	Lactobacillus sakei ssp. sakei 23K		9	9
No Yes	Lactobacillus reuteri DSM 20016		10	9
No Yes	Lactobacillus gasseri ATCC 33323		6	6
No Yes	Lactobacillus plantarum WCFS1		14	14
No Yes	Lactobacillus helveticus DPC 4571		6	6
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842		6	6
No Yes	Lactobacillus brevis ATCC 367		11	11
No Yes	Lactobacillus acidophilus NCFM		9	9
No Yes	Pediococcus pentosaceus ATCC 25745		8	8
No Yes	Lactococcus lactis ssp. lactis Il1403		16	15
No Yes	Streptococcus gallolyticus UCN34		16	15
No Yes	Streptococcus equi ssp. zooepidemicus MGCS10565		13	13
No Yes	Streptococcus dysgalactiae ssp. equisimilis GGS_124		17	16
No Yes	Streptococcus mitis B6		11	11
No Yes	Streptococcus uberis 0140J		14	13
No Yes	Streptococcus pyogenes M1 GAS		12	11
No Yes	Streptococcus pneumoniae TIGR4 (Virulent)		12	12
No Yes	Streptococcus agalactiae NEM316		18	17
No Yes	Streptococcus mutans UA159		14	13
No Yes	Streptococcus thermophilus LMG 18311 (Older strain)		10	10
No Yes	Streptococcus suis 05ZYH33		14	14
No Yes	Streptococcus sanguinis SK36		16	16
No Yes	Streptococcus gordonii Challis subCH1		15	15
No Yes	Exiguobacterium sp. AT1b		27	26
No Yes	Exiguobacterium sibiricum 255-15		24	23
No Yes	Bacillus tusciae DSM 2912		19	18
No Yes	Alicyclobacillus acidocaldarius ssp. acidocaldarius DSM 446		20	18
No Yes	Brevibacillus brevis NBRC 100599		38	37
No Yes	Paenibacillus sp. JDR-2		22	22
No Yes	Listeria welshimeri ser. 6b SLCC5334		14	14
No Yes	Listeria innocua Clip11262		15	15
No Yes	Listeria seeligeri ser. 1/2b SLCC3954		14	14
No Yes	Listeria monocytogenes EGD-e		15	15
No Yes	Lysinibacillus sphaericus C3-41		26	26
No Yes	Oceanobacillus iheyensis HTE831		28	28
No Yes	Anoxybacillus flavithermus WK1		29	28
No Yes	Geobacillus sp. WCH70		26	25
No Yes	Geobacillus thermodenitrificans NG80-2		26	25
No Yes	Geobacillus kaustophilus HTA426		27	26
No Yes	Bacillus subtilis ssp. subtilis 168		32	31
No Yes	Bacillus licheniformis ATCC 14580		28	27
No Yes	Bacillus amyloliquefaciens FZB42		27	26
No Yes	Bacillus halodurans C-125		23	23
No Yes	Bacillus weihenstephanensis KBAB4		28	27
No Yes	Bacillus thuringiensis ser. konkukian 97-27		33	32
No Yes	Bacillus cereus ATCC 14579		30	29
No Yes	Bacillus anthracis Ames Ancestor		29	28
No Yes	Bacillus pseudofirmus OF4		31	30
No Yes	Bacillus clausii KSM-K16		22	22
No Yes	Bacillus pumilus SAFR-032		26	26
No Yes	Bacillus megaterium QM B1551		29	29
No Yes	Macrococcus caseolyticus JCSC5402		18	17
No Yes	Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305		20	19
No Yes	Staphylococcus lugdunensis HKU09-01		18	17
No Yes	Staphylococcus haemolyticus JCSC1435		18	17
No Yes	Staphylococcus epidermidis RP62A		19	18
No Yes	Staphylococcus carnosus ssp. carnosus TM300		19	18
No Yes	Staphylococcus aureus ssp. aureus NCTC 8325		20	19
No Yes	Nautilia profundicola AmH		12	12
No Yes	Sulfurospirillum deleyianum DSM 6946		16	16
No Yes	Arcobacter butzleri RM4018		20	20
No Yes	Campylobacter hominis ATCC BAA-381		10	10
No Yes	Campylobacter lari RM2100		15	15
No Yes	Campylobacter curvus 525.92		16	16
No Yes	Campylobacter concisus 13826		13	13
No Yes	Campylobacter jejuni ssp. jejuni NCTC 11168		14	14
No Yes	Campylobacter fetus ssp. fetus 82-40		13	13
No Yes	Sulfurimonas denitrificans DSM 1251		22	22
No Yes	Wolinella succinogenes DSM 1740		17	17
No Yes	Helicobacter hepaticus ATCC 51449		10	10
No Yes	Helicobacter mustelae 12198		10	10
No Yes	Helicobacter acinonychis Sheeba		7	7
No Yes	Helicobacter pylori 26695		7	7
No Yes	Nitratiruptor sp. SB155-2		23	23
No Yes	Sulfurovum sp. NBC37-1		34	34
No Yes	Bdellovibrio bacteriovorus HD100		34	33
No Yes	Syntrophus aciditrophicus SB		28	28
No Yes	Syntrophobacter fumaroxidans MPOB		29	28
No Yes	Desulfotalea psychrophila LSv54		17	17
No Yes	Desulfatibacillum alkenivorans AK-01		25	25
No Yes	Desulfobacterium autotrophicum HRM2		25	25
No Yes	Desulfococcus oleovorans Hxd3		18	18
No Yes	Desulfohalobium retbaense DSM 5692		14	14
No Yes	Desulfomicrobium baculatum DSM 4028		22	21
No Yes	Lawsonia intracellularis PHE/MN1-00		5	5
No Yes	Desulfovibrio magneticus RS-1		30	29
No Yes	Desulfovibrio vulgaris Hildenborough		15	14
No Yes	Desulfovibrio salexigens DSM 2638		20	20
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans G20		24	23
No Yes	Pelobacter propionicus DSM 2379		30	30
No Yes	Pelobacter carbinolicus DSM 2380		26	26
No Yes	Geobacter uraniireducens Rf4		27	27
No Yes	Geobacter sp. FRC-32		26	26
No Yes	Geobacter lovleyi SZ		26	26
No Yes	Geobacter bemidjiensis Bem		24	24
No Yes	Geobacter sulfurreducens PCA		28	28
No Yes	Geobacter metallireducens GS-15		30	30
No Yes	Haliangium ochraceum DSM 14365		70	66
No Yes	Sorangium cellulosum So ce 56		107	100
No Yes	Anaeromyxobacter sp. Fw109-5		36	34
No Yes	Anaeromyxobacter dehalogenans 2CP-C		42	40
No Yes	Myxococcus xanthus DK 1622		65	62
No Yes	Magnetococcus sp. MC-1		29	29
No Yes	Sideroxydans lithotrophicus ES-1		40	40
No Yes	Aromatoleum aromaticum EbN1		42	42
No Yes	Dechloromonas aromatica RCB		57	56
No Yes	Thauera sp. MZ1T		43	42
No Yes	Laribacter hongkongensis HLHK9		29	28
No Yes	Chromobacterium violaceum ATCC 12472		46	46
No Yes	Neisseria meningitidis Z2491		23	22
No Yes	Neisseria gonorrhoeae FA 1090		21	20
No Yes	Methylotenera mobilis JLW8		33	32
No Yes	Methylovorus sp. SIP3-4		36	35
No Yes	Methylobacillus flagellatus KT		33	32
No Yes	Thiobacillus denitrificans ATCC 25259		47	47
No Yes	Candidatus Accumulibacter phosphatis clade IIA UW-1		54	53
No Yes	Methylibium petroleiphilum PM1		59	58
No Yes	Leptothrix cholodnii SP-6		62	59
No Yes	Ralstonia eutropha JMP134		65	65
No Yes	Cupriavidus taiwanensis		55	55
No Yes	Ralstonia metallidurans CH34		65	65
No Yes	Ralstonia pickettii 12J		64	63
No Yes	Ralstonia solanacearum GMI1000		50	50
No Yes	Polynucleobacter necessarius ssp. asymbioticus QLW-P1DMWA-1		30	29
No Yes	Burkholderia phytofirmans PsJN		83	81
No Yes	Burkholderia phymatum STM815		59	58
No Yes	Burkholderia thailandensis E264		57	56
No Yes	Burkholderia pseudomallei K96243		57	56
No Yes	Burkholderia mallei ATCC 23344		48	47
No Yes	Burkholderia sp. 383		73	72
No Yes	Burkholderia ambifaria AMMD		65	64
No Yes	Burkholderia cenocepacia AU 1054		62	61
No Yes	Burkholderia multivorans ATCC 17616		60	59
No Yes	Burkholderia vietnamiensis G4		59	58
No Yes	Burkholderia xenovorans LB400		73	72
No Yes	Burkholderia glumae BGR1		49	48
No Yes	Verminephrobacter eiseniae EF01-2		34	33
No Yes	Delftia acidovorans SPH-1		60	58
No Yes	Polaromonas sp. JS666		68	67
No Yes	Polaromonas naphthalenivorans CJ2		59	58
No Yes	Variovorax paradoxus S110		78	77
No Yes	Rhodoferax ferrireducens T118		52	52
No Yes	Diaphorobacter sp. TPSY		43	42
No Yes	Acidovorax sp. JS42		54	53
No Yes	Acidovorax citrulli AAC00-1		47	46
No Yes	Comamonas sp. CNB-1		55	53
No Yes	Herminiimonas arsenicoxydans		42	41
No Yes	Janthinobacterium sp. Marseille		55	53
No Yes	Bordetella petrii DSM 12804		70	70
No Yes	Bordetella avium 197N		40	40
No Yes	Bordetella pertussis Tohama I		35	35
No Yes	Bordetella parapertussis 12822		50	50
No Yes	Bordetella bronchiseptica RB50		51	51
No Yes	Nitrosospira multiformis ATCC 25196		42	42
No Yes	Nitrosomonas eutropha C91		38	38
No Yes	Nitrosomonas europaea ATCC 19718		33	33
No Yes	Caulobacter sp. K31		61	60
No Yes	Caulobacter crescentus CB15		48	47
No Yes	Caulobacter segnis ATCC 21756		55	54
No Yes	Phenylobacterium zucineum HLK1		54	53
No Yes	Erythrobacter litoralis HTCC2594		49	48
No Yes	Sphingopyxis alaskensis RB2256		52	51
No Yes	Novosphingobium aromaticivorans DSM 12444		48	47
No Yes	Sphingobium japonicum UT26S		46	45
No Yes	Sphingomonas wittichii RW1		64	64
No Yes	Zymomonas mobilis ssp. mobilis ZM4		15	15
No Yes	Maricaulis maris MCS10		41	41
No Yes	Hirschia baltica ATCC 49814		43	43
No Yes	Hyphomonas neptunium ATCC 15444		47	47
No Yes	Dinoroseobacter shibae DFL 12		38	38
No Yes	Jannaschia sp. CCS1		40	40
No Yes	Ruegeria sp. TM1040		37	37
No Yes	Ruegeria pomeroyi DSS-3		53	52
No Yes	Roseobacter denitrificans OCh 114		40	40
No Yes	Rhodobacter sphaeroides 2.4.1		33	33
No Yes	Rhodobacter capsulatus SB1003		30	30
No Yes	Paracoccus denitrificans PD1222		54	54
No Yes	Magnetospirillum magneticum AMB-1		38	38
No Yes	Rhodospirillum centenum SW		37	37
No Yes	Rhodospirillum rubrum ATCC 11170		35	34
No Yes	Azospirillum sp. B510		27	27
No Yes	Granulibacter bethesdensis CGDNIH1		30	30
No Yes	Gluconacetobacter diazotrophicus PAl 5		40	39
No Yes	Gluconobacter oxydans 621H		26	25
No Yes	Acetobacter pasteurianus IFO 3283-01		25	25
No Yes	alpha proteobacterium IMCC1322		32	32
No Yes	Candidatus Pelagibacter ubique HTCC1062		16	16
No Yes	Neorickettsia sennetsu Miyayama		11	11
No Yes	Neorickettsia risticii Illinois		11	11
No Yes	Ehrlichia chaffeensis Arkansas		14	14
No Yes	Ehrlichia canis Jake		14	14
No Yes	Ehrlichia ruminantium Welgevonden		14	14
No Yes	Anaplasma phagocytophilum HZ		15	15
No Yes	Anaplasma marginale St. Maries		15	15
No Yes	Anaplasma centrale Israel		15	15
No Yes	Orientia tsutsugamushi Boryong		13	13
No Yes	Rickettsia bellii RML369-C		12	12
No Yes	Rickettsia canadensis McKiel		10	10
No Yes	Rickettsia typhi Wilmington		10	10
No Yes	Rickettsia prowazekii Madrid E		11	11
No Yes	Rickettsia peacockii Rustic		10	10
No Yes	Rickettsia felis URRWXCal2		12	12
No Yes	Rickettsia massiliae MTU5		14	14
No Yes	Rickettsia africae ESF-5		12	12
No Yes	Rickettsia akari Hartford		12	12
No Yes	Rickettsia rickettsii Sheila Smith		12	12
No Yes	Rickettsia conorii Malish 7		12	12
No Yes	Wolbachia endosymbiont of Culex_quinquefasciatus Pel		11	11
No Yes	Wolbachia endosymbiont of Drosophila melanogaster (Genus only)		11	11
No Yes	Wolbachia endosymbiont TRS of Brugia malayi		11	11
No Yes	Wolbachia sp. wRi		11	11
No Yes	Xanthobacter autotrophicus Py2		61	60
No Yes	Azorhizobium caulinodans ORS 571		49	49
No Yes	Methylobacterium chloromethanicum CM4		51	51
No Yes	Methylobacterium extorquens PA1		48	48
No Yes	Methylobacterium sp. 4-46		57	57
No Yes	Methylobacterium populi BJ001		59	59
No Yes	Methylobacterium nodulans ORS 2060		55	55
No Yes	Methylobacterium radiotolerans JCM 2831		56	56
No Yes	Ochrobactrum anthropi ATCC 49188		46	46
No Yes	Brucella microti CCM 4915		29	29
No Yes	Brucella canis ATCC 23365		29	29
No Yes	Brucella suis 1330		29	29
No Yes	Brucella melitensis bv. 1 16M		28	28
No Yes	Brucella ovis ATCC 25840		27	27
No Yes	Brucella abortus bv. 1 9-941		28	28
No Yes	Sinorhizobium medicae WSM419		39	38
No Yes	Sinorhizobium meliloti 1021		38	38
No Yes	Rhizobium etli CFN 42		47	47
No Yes	Rhizobium sp. NGR234		45	45
No Yes	Rhizobium leguminosarum bv. viciae 3841		52	52
No Yes	Agrobacterium vitis S4		36	36
No Yes	Agrobacterium radiobacter K84		49	48
No Yes	Agrobacterium tumefaciens C58		33	33
No Yes	Candidatus Liberibacter asiaticus psy62		8	8
No Yes	Chelativorans sp. BNC1		34	34
No Yes	Parvibaculum lavamentivorans DS-1		58	58
No Yes	Mesorhizobium loti MAFF303099		53	53
No Yes	Methylocella silvestris BL2		43	43
No Yes	Beijerinckia indica ssp. indica ATCC 9039		47	47
No Yes	Oligotropha carboxidovorans OM5		42	42
No Yes	Rhodopseudomonas palustris CGA009		51	51
No Yes	Nitrobacter winogradskyi Nb-255		33	33
No Yes	Nitrobacter hamburgensis X14		31	31
No Yes	Bradyrhizobium sp. ORS278		81	81
No Yes	Bradyrhizobium japonicum USDA 110		73	73
No Yes	Bartonella tribocorum CIP 105476		13	13
No Yes	Bartonella henselae Houston-1		13	13
No Yes	Bartonella grahamii as4aup		13	13
No Yes	Bartonella quintana Toulouse		12	12
No Yes	Bartonella bacilliformis KC583		13	13
No Yes	Acidithiobacillus ferrooxidans ATCC 23270		32	32
No Yes	Mannheimia succiniciproducens MBEL55E		23	23
No Yes	Aggregatibacter aphrophilus NJ8700		19	19
No Yes	Aggregatibacter actinomycetemcomitans D11S-1		20	20
No Yes	Haemophilus somnus 129PT		15	15
No Yes	Pasteurella multocida ssp. multocida Pm70		22	22
No Yes	Haemophilus parasuis SH0165		19	19
No Yes	Haemophilus ducreyi 35000HP		15	15
No Yes	Haemophilus influenzae Rd KW20		20	20
No Yes	Actinobacillus succinogenes 130Z		24	24
No Yes	Actinobacillus pleuropneumoniae L20		20	20
No Yes	Tolumonas auensis DSM 9187		27	26
No Yes	Aeromonas salmonicida ssp. salmonicida A449		42	41
No Yes	Aeromonas hydrophila ssp. hydrophila ATCC 7966		46	45
No Yes	Aliivibrio salmonicida LFI1238		33	33
No Yes	Vibrio fischeri ES114		38	38
No Yes	Vibrio parahaemolyticus RIMD 2210633		42	41
No Yes	Vibrio harveyi ATCC BAA-1116		43	42
No Yes	Vibrio sp. Ex25		40	39
No Yes	Vibrio splendidus LGP32		51	50
No Yes	Vibrio vulnificus YJ016 (Good annotation)		38	37
No Yes	Vibrio cholerae O1 biov. El Tor N16961		30	30
No Yes	Photobacterium profundum SS9		45	45
No Yes	Psychromonas ingrahamii 37		39	39
No Yes	Idiomarina loihiensis L2TR		32	32
No Yes	Shewanella piezotolerans WP3		54	53
No Yes	Shewanella loihica PV-4		48	47
No Yes	Shewanella halifaxensis HAW-EB4		48	47
No Yes	Shewanella sediminis HAW-EB3		49	48
No Yes	Shewanella denitrificans OS217		36	35
No Yes	Shewanella pealeana ATCC 700345		47	46
No Yes	Shewanella oneidensis MR-1		46	45
No Yes	Shewanella baltica OS155		49	46
No Yes	Shewanella woodyi ATCC 51908		62	61
No Yes	Shewanella sp. MR-7		50	48
No Yes	Shewanella amazonensis SB2B		49	47
No Yes	Shewanella violacea DSS12		50	48
No Yes	Shewanella frigidimarina NCIMB 400		53	52
No Yes	Shewanella putrefaciens CN-32		50	49
No Yes	Colwellia psychrerythraea 34H		71	67
No Yes	Pseudoalteromonas atlantica T6c		53	50
No Yes	Pseudoalteromonas haloplanktis TAC125		44	43
No Yes	Teredinibacter turnerae T7901		44	43
No Yes	Saccharophagus degradans 2-40		45	44
No Yes	Marinobacter aquaeolei VT8		47	45
No Yes	Alteromonas macleodii Deep ecotype		38	37
No Yes	Hahella chejuensis KCTC 2396		60	56
No Yes	Alcanivorax borkumensis SK2		39	35
No Yes	Marinomonas sp. MWYL1		41	40
No Yes	Chromohalobacter salexigens DSM 3043		33	33
No Yes	Methylococcus capsulatus Bath		42	42
No Yes	Dichelobacter nodosus VCS1703A		13	12
No Yes	Stenotrophomonas maltophilia R551-3		55	54
No Yes	Xylella fastidiosa 9a5c		26	25
No Yes	Xanthomonas axonopodis pv. citri 306		50	49
No Yes	Xanthomonas albilineans		36	35
No Yes	Xanthomonas oryzae pv. oryzae KACC10331		38	37
No Yes	Xanthomonas campestris pv. campestris ATCC 33913 (Completed 2001)		47	46
No Yes	Halothiobacillus neapolitanus c2		42	42
No Yes	Alkalilimnicola ehrlichii MLHE-1		35	35
No Yes	Thioalkalivibrio sp. HL-EbGR7		50	49
No Yes	Halorhodospira halophila SL1		24	24
No Yes	Allochromatium vinosum DSM 180		37	35
No Yes	Nitrosococcus halophilus Nc4		32	32
No Yes	Nitrosococcus oceani ATCC 19707		35	35
No Yes	Coxiella burnetii RSA 493		15	15
No Yes	Legionella longbeachae NSW150		33	33
No Yes	Legionella pneumophila ssp. pneumophila Philadelphia 1		27	27
No Yes	Kangiella koreensis DSM 16069		38	37
No Yes	Baumannia cicadellinicola Hc		5	5
No Yes	Candidatus Carsonella ruddii PV		2	2
No Yes	Candidatus Vesicomyosocius okutanii HA		19	19
No Yes	Candidatus Ruthia magnifica Cm		19	19
No Yes	Cronobacter turicensis z3032		31	30
No Yes	Cronobacter sakazakii ATCC BAA-894		30	29
No Yes	Candidatus Riesia pediculicola USDA		3	3
No Yes	Dickeya zeae Ech1591		36	35
No Yes	Dickeya dadantii Ech703		33	32
No Yes	Candidatus Hamiltonella defensa 5AT		10	10
No Yes	Candidatus Blochmannia floridanus		6	6
No Yes	Pectobacterium wasabiae WPP163		37	36
No Yes	Pectobacterium atrosepticum SCRI1043		39	38
No Yes	Pectobacterium carotovorum ssp. carotovorum PC1		38	37
No Yes	Sodalis glossinidius morsitans		22	22
No Yes	Pantoea ananatis LMG 20103		36	35
No Yes	Wigglesworthia glossinidia		5	5
No Yes	Buchnera aphidicola APS		5	5
No Yes	Photorhabdus asymbiotica		19	19
No Yes	Photorhabdus luminescens ssp. laumondii TTO1		20	20
No Yes	Edwardsiella ictaluri 93-146		26	26
No Yes	Edwardsiella tarda EIB202		25	25
No Yes	Yersinia pseudotuberculosis IP 32953		27	27
No Yes	Yersinia pestis CO92		26	26
No Yes	Yersinia enterocolitica ssp. enterocolitica 8081		34	34
No Yes	Xenorhabdus bovienii SS-2004		17	17
No Yes	Shigella sonnei Ss046		32	31
No Yes	Shigella flexneri 2a 2457T		32	31
No Yes	Shigella dysenteriae Sd197		32	31
No Yes	Shigella boydii Sb227		31	30
No Yes	Serratia proteamaculans 568		41	41
No Yes	Salmonella enterica ssp. enterica ser. Typhimurium LT2		43	42
No Yes	Proteus mirabilis HI4320		27	26
No Yes	Klebsiella variicola At-22		46	45
No Yes	Klebsiella pneumoniae ssp. pneumoniae MGH 78578		42	41
No Yes	Escherichia fergusonii ATCC 35469		35	34
No Yes	Escherichia coli K-12 subMG1655		33	32
No Yes	Erwinia tasmaniensis Et1/99		31	31
No Yes	Erwinia pyrifoliae Ep1/96		27	27
No Yes	Erwinia amylovora ATCC 49946		27	27
No Yes	Enterobacter sp. 638		34	33
No Yes	Citrobacter rodentium ICC168		35	34
No Yes	Citrobacter koseri ATCC BAA-895		37	36
No Yes	Azotobacter vinelandii DJ		48	47
No Yes	Pseudomonas entomophila L48		60	59
No Yes	Pseudomonas syringae pv. tomato DC3000		48	47
No Yes	Pseudomonas stutzeri A1501		54	52
No Yes	Pseudomonas putida KT2440		61	60
No Yes	Pseudomonas fluorescens Pf-5		59	58
No Yes	Pseudomonas mendocina ymp		47	46
No Yes	Pseudomonas aeruginosa PAO1		59	58
No Yes	Cellvibrio japonicus Ueda107		33	31
No Yes	Psychrobacter sp. PRwf-1		31	30
No Yes	Psychrobacter arcticus 273-4		26	25
No Yes	Psychrobacter cryohalolentis K5		35	34
No Yes	Acinetobacter sp. ADP1		37	34
No Yes	Acinetobacter baumannii ATCC 17978		36	34
No Yes	Thiomicrospira crunogena XCL-2		35	35
No Yes	Francisella philomiragia ssp. philomiragia ATCC 25017		24	24
No Yes	Francisella tularensis ssp. tularensis SCHU S4		18	18
No Yes	Gloeobacter violaceus PCC 7421		38	38
No Yes	Acaryochloris marina MBIC11017		54	54
No Yes	Prochlorococcus marinus MIT 9313		24	24
No Yes	Nostoc punctiforme PCC 73102		57	57
No Yes	Nostoc sp. PCC 7120		60	60
No Yes	Anabaena variabilis ATCC 29413		50	50
No Yes	Trichodesmium erythraeum IMS101		38	38
No Yes	Thermosynechococcus elongatus BP-1		27	27
No Yes	cyanobacterium UCYN-A		12	12
No Yes	Cyanothece sp. ATCC 51142		43	43
No Yes	Synechocystis sp. PCC 6803		34	34
No Yes	Synechococcus elongatus PCC 6301		28	28
No Yes	Microcystis aeruginosa NIES-843		34	34
No Yes	Nitrosopumilus maritimus SCM1		22	22
No Yes	Nanoarchaeum equitans Kin4-M		4	4
No Yes	Candidatus Korarchaeum cryptofilum OPF8		6	5
No Yes	Methanocella paludicola SANAE		23	23
No Yes	Methanosaeta thermophila PT		11	11
No Yes	Methanococcoides burtonii DSM 6242		14	14
No Yes	Methanosarcina acetivorans C2A		13	13
No Yes	Methanosarcina mazei Go1		16	16
No Yes	Methanosarcina barkeri Fusaro		18	18
No Yes	Methanohalophilus mahii DSM 5219		11	11
No Yes	Methanosphaerula palustris E1-9c		16	16
No Yes	Candidatus Methanoregula boonei 6A8		13	13
No Yes	Methanospirillum hungatei JF-1		20	20
No Yes	Methanocorpusculum labreanum Z		5	5
No Yes	Methanoculleus marisnigri JR1		12	12
No Yes	Ferroglobus placidus DSM 10642		11	11
No Yes	Archaeoglobus profundus DSM 5631		8	8
No Yes	Archaeoglobus fulgidus DSM 4304		12	12
No Yes	Thermococcus onnurineus NA1		10	9
No Yes	Thermococcus kodakarensis KOD1		10	9
No Yes	Thermococcus gammatolerans EJ3		5	4
No Yes	Thermococcus sibiricus MM 739		11	10
No Yes	Pyrococcus horikoshii OT3		4	3
No Yes	Pyrococcus abyssi GE5		4	3
No Yes	Pyrococcus furiosus DSM 3638		11	10
No Yes	Thermoplasma volcanium GSS1		10	9
No Yes	Thermoplasma acidophilum DSM 1728		9	8
No Yes	Picrophilus torridus DSM 9790		10	9
No Yes	Haloquadratum walsbyi DSM 16790		25	25
No Yes	Halomicrobium mukohataei DSM 12286		26	26
No Yes	Halorhabdus utahensis DSM 12940		25	24
No Yes	Haloterrigena turkmenica DSM 5511		24	24
No Yes	Natronomonas pharaonis DSM 2160		25	25
No Yes	Natrialba magadii ATCC 43099		24	24
No Yes	Halorubrum lacusprofundi ATCC 49239		27	27
No Yes	Haloferax volcanii DS2		23	23
No Yes	Halobacterium salinarum R1		20	20
No Yes	Halobacterium sp. NRC-1		20	20
No Yes	Haloarcula marismortui ATCC 43049		27	27
No Yes	Methanocaldococcus sp. FS406-22		3	3
No Yes	Methanocaldococcus fervens AG86		3	3
No Yes	Methanocaldococcus vulcanius M7		3	3
No Yes	Methanocaldococcus jannaschii DSM 2661		3	3
No Yes	Methanococcus aeolicus Nankai-3		6	6
No Yes	Methanococcus maripaludis S2		5	5
No Yes	Methanococcus vannielii SB		5	5
No Yes	Methanothermobacter thermautotrophicus Delta H		8	8
No Yes	Methanosphaera stadtmanae DSM 3091		2	2
No Yes	Methanobrevibacter ruminantium M1		4	4
No Yes	Methanobrevibacter smithii ATCC 35061		2	2
No Yes	uncultured methanogenic archaeon RC-I		24	24
No Yes	Aciduliprofundum boonei T469		5	4
No Yes	Hyperthermus butylicus DSM 5456		9	8
No Yes	Aeropyrum pernix K1		18	17
No Yes	Ignicoccus hospitalis KIN4/I		8	7
No Yes	Staphylothermus marinus F1		6	6
No Yes	Desulfurococcus kamchatkensis 1221n		5	5
No Yes	Metallosphaera sedula DSM 5348		16	15
No Yes	Sulfolobus tokodaii 7		14	13
No Yes	Sulfolobus islandicus Y.N.15.51		15	14
No Yes	Sulfolobus solfataricus P2		13	12
No Yes	Sulfolobus acidocaldarius DSM 639		14	13
No Yes	Thermofilum pendens Hrk 5		11	10
No Yes	Caldivirga maquilingensis IC-167		12	11
No Yes	Pyrobaculum calidifontis JCM 11548		12	11
No Yes	Pyrobaculum arsenaticum DSM 13514		13	12
No Yes	Pyrobaculum aerophilum IM2		13	12
No Yes	Pyrobaculum islandicum DSM 4184		9	8
No Yes	Thermoproteus neutrophilus V24Sta		10	9
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	191	148
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	205	170
No Yes	Cryptococcus neoformans var. grubii H99		50	46
No Yes	Cryptococcus neoformans B-3501A		52	48
No Yes	Ajellomyces dermatitidis ER-3		60	52
No Yes	Histoplasma capsulatum H143		55	47
No Yes	Histoplasma capsulatum H88		59	52
No Yes	Histoplasma capsulatum G186AR		60	52
No Yes	Paracoccidioides brasiliensis Pb01		58	50
No Yes	Paracoccidioides brasiliensis Pb03		55	47
No Yes	Coccidioides posadasii str. Silveira		58	51
No Yes	Coccidioides immitis RMSCC 3703		55	48
No Yes	Coccidioides immitis RMSCC 2394		60	52
No Yes	Coccidioides immitis H538.4		50	44
No Yes	Aspergillus fumigatus A1163		79	72
No Yes	Candida albicans WO-1		56	51
No Yes	Saccharomyces cerevisiae YJM789		50	41
No Yes	Saccharomyces cerevisiae RM11-1a		51	42
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	52	43
No Yes	Schizosaccharomyces pombe 972h-		44	36
No Yes	Batrachochytrium dendrobatidis JAM81		53	45
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	314	281
No Yes	Plasmodium falciparum HB3		47	41
No Yes	Plasmodium falciparum Dd2		36	32
No Yes	Candidatus Phytoplasma australiense		2	2
No Yes	Ureaplasma parvum ser. 3 ATCC 27815		3	3
No Yes	Mycoplasma agalactiae		3	3
No Yes	Mycoplasma hyopneumoniae 7448		3	3
No Yes	Mycoplasma hyopneumoniae J		3	3
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis JB197		27	27
No Yes	Leptospira interrogans ser. Copenhageni Fiocruz L1-130		33	33
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Ames)		41	40
No Yes	Treponema pallidum ssp. pallidum SS14		4	4
No Yes	Borrelia burgdorferi ZS7		1	1
No Yes	Bifidobacterium longum ssp. infantis ATCC 15697		10	9
No Yes	Bifidobacterium longum		10	9
No Yes	Bifidobacterium animalis ssp. lactis Bl-04		8	7
No Yes	Bifidobacterium animalis ssp. lactis DSM 10140		8	7
No Yes	Frankia sp. EAN1pec		26	26
No Yes	Propionibacterium acnes SK137		15	14
No Yes	Mycobacterium sp. KMS		28	28
No Yes	Mycobacterium sp. JLS		28	28
No Yes	Mycobacterium avium 104		24	24
No Yes	Mycobacterium tuberculosis KZN 1435		26	26
No Yes	Mycobacterium tuberculosis H37Ra		25	25
No Yes	Mycobacterium tuberculosis F11		26	26
No Yes	Mycobacterium tuberculosis CDC1551		25	25
No Yes	Mycobacterium bovis BCG Tokyo 172		26	26
No Yes	Mycobacterium bovis BCG Pasteur 1173P2		27	27
No Yes	Mycobacterium leprae Br4923		13	13
No Yes	Corynebacterium glutamicum R		20	20
No Yes	Corynebacterium glutamicum ATCC 13032 Bielefeld		22	22
No Yes	Tropheryma whipplei TW08/27		5	5
No Yes	Clavibacter michiganensis ssp. sepedonicus		15	15
No Yes	Dehalococcoides sp. GT		11	11
No Yes	Dehalococcoides sp. VS		11	11
No Yes	Dehalococcoides sp. BAV1		11	11
No Yes	Chlorobium phaeobacteroides BS1		14	14
No Yes	Porphyromonas gingivalis ATCC 33277		16	15
No Yes	Bacteroides fragilis YCH46		33	32
No Yes	Salinibacter ruber		24	24
No Yes	Blattabacterium sp. BPLAN		3	3
No Yes	Chlamydophila pneumoniae J138		7	7
No Yes	Chlamydophila pneumoniae CWL029		7	7
No Yes	Chlamydophila pneumoniae AR39		7	7
No Yes	Chlamydia trachomatis B/TZ1A828/OT		7	7
No Yes	Chlamydia trachomatis B/Jali20/OT		7	7
No Yes	Chlamydia trachomatis L2b/UCH-1/proctitis		7	7
No Yes	Chlamydia trachomatis 434/Bu		7	7
No Yes	Chlamydia trachomatis A/HAR-13		7	7
No Yes	Thermus thermophilus HB8		18	17
No Yes	Desulfitobacterium hafniense DCB-2		21	20
No Yes	Clostridium kluyveri NBRC 12016		11	10
No Yes	Clostridium perfringens SM101		10	10
No Yes	Clostridium perfringens ATCC 13124		15	14
No Yes	Clostridium difficile R20291		13	13
No Yes	Clostridium difficile CD196		12	12
No Yes	Clostridium botulinum F Langeland		14	14
No Yes	Clostridium botulinum E3 Alaska E43		15	15
No Yes	Clostridium botulinum B1 Okra		14	14
No Yes	Clostridium botulinum Ba4 657		14	14
No Yes	Clostridium botulinum B Eklund 17B		13	13
No Yes	Clostridium botulinum A2 Kyoto		14	14
No Yes	Clostridium botulinum A3 Loch Maree		14	14
No Yes	Clostridium botulinum A Hall		14	14
No Yes	Clostridium botulinum A ATCC 19397		14	14
No Yes	Lactobacillus casei BL23		13	13
No Yes	Lactobacillus rhamnosus Lc 705		11	11
No Yes	Lactobacillus johnsonii FI9785		8	8
No Yes	Lactobacillus reuteri JCM 1112		10	9
No Yes	Lactobacillus plantarum JDM1		13	13
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC BAA-365		6	6
No Yes	Lactococcus lactis ssp. lactis KF147		16	15
No Yes	Lactococcus lactis ssp. cremoris MG1363		16	15
No Yes	Lactococcus lactis ssp. cremoris SK11		16	15
No Yes	Streptococcus equi ssp. equi 4047		11	10
No Yes	Streptococcus equi ssp. zooepidemicus		13	12
No Yes	Streptococcus pyogenes MGAS10750		13	12
No Yes	Streptococcus pyogenes MGAS10270		14	13
No Yes	Streptococcus pyogenes MGAS2096		13	12
No Yes	Streptococcus pyogenes MGAS9429		13	12
No Yes	Streptococcus pyogenes MGAS6180		14	13
No Yes	Streptococcus pyogenes NZ131		13	12
No Yes	Streptococcus pyogenes MGAS8232		13	12
No Yes	Streptococcus pyogenes MGAS10394		13	12
No Yes	Streptococcus pyogenes Manfredo		13	12
No Yes	Streptococcus pyogenes MGAS315		13	12
No Yes	Streptococcus pyogenes SSI-1		13	12
No Yes	Streptococcus pyogenes MGAS5005		13	12
No Yes	Streptococcus pneumoniae ATCC 700669		13	13
No Yes	Streptococcus pneumoniae CGSP14		12	12
No Yes	Streptococcus pneumoniae G54		12	12
No Yes	Streptococcus pneumoniae P1031		12	12
No Yes	Streptococcus pneumoniae JJA		12	12
No Yes	Streptococcus pneumoniae 70585		12	12
No Yes	Streptococcus pneumoniae Hungary19A-6		12	12
No Yes	Streptococcus pneumoniae Taiwan19F-14		12	12
No Yes	Streptococcus pneumoniae D39		12	12
No Yes	Streptococcus pneumoniae R6 (Non-virulent)		12	12
No Yes	Streptococcus agalactiae A909		15	14
No Yes	Streptococcus agalactiae 2603V/R		15	14
No Yes	Streptococcus mutans NN2025		14	13
No Yes	Streptococcus thermophilus LMD-9		10	10
No Yes	Streptococcus thermophilus CNRZ1066 (Younger strain)		9	9
No Yes	Streptococcus suis BM407		13	13
No Yes	Streptococcus suis SC84		13	13
No Yes	Streptococcus suis 98HAH33		14	14
No Yes	Streptococcus suis P1/7		13	13
No Yes	Listeria monocytogenes 08-5578		15	15
No Yes	Listeria monocytogenes 08-5923		15	15
No Yes	Listeria monocytogenes Clip80459		15	15
No Yes	Listeria monocytogenes HCC23		14	14
No Yes	Listeria monocytogenes 4b F2365		15	15
No Yes	Geobacillus sp. Y412MC61		25	24
No Yes	Geobacillus sp. Y412MC10		24	24
No Yes	Bacillus licheniformis ATCC 14580		29	28
No Yes	Bacillus cytotoxicus NVH 391-98		26	25
No Yes	Bacillus thuringiensis Al Hakam		29	28
No Yes	Bacillus cereus 03BB102		29	28
No Yes	Bacillus cereus AH820		28	27
No Yes	Bacillus cereus AH187		31	30
No Yes	Bacillus cereus B4264		31	30
No Yes	Bacillus cereus G9842		30	29
No Yes	Bacillus cereus Q1		31	30
No Yes	Bacillus cereus E33L		29	28
No Yes	Bacillus cereus ATCC 10987		28	27
No Yes	Bacillus anthracis A0248		28	27
No Yes	Bacillus anthracis CDC 684		28	27
No Yes	Bacillus anthracis Sterne		29	28
No Yes	Bacillus anthracis Ames		29	28
No Yes	Bacillus megaterium DSM319		29	29
No Yes	Staphylococcus epidermidis ATCC 12228		20	19
No Yes	Staphylococcus aureus RF122		20	19
No Yes	Staphylococcus aureus ssp. aureus ED98		20	19
No Yes	Staphylococcus aureus ssp. aureus Newman		19	18
No Yes	Staphylococcus aureus ssp. aureus Mu3		20	19
No Yes	Staphylococcus aureus ssp. aureus USA300_TCH1516		20	19
No Yes	Staphylococcus aureus ssp. aureus USA300_FPR3757		20	19
No Yes	Staphylococcus aureus ssp. aureus JH1		20	19
No Yes	Staphylococcus aureus ssp. aureus JH9		20	19
No Yes	Staphylococcus aureus ssp. aureus MSSA476		20	19
No Yes	Staphylococcus aureus ssp. aureus MRSA252		20	19
No Yes	Staphylococcus aureus ssp. aureus MW2		20	19
No Yes	Staphylococcus aureus ssp. aureus N315		20	19
No Yes	Staphylococcus aureus ssp. aureus Mu50		20	19
No Yes	Staphylococcus aureus ssp. aureus COL		20	19
No Yes	Campylobacter jejuni RM1221		14	14
No Yes	Campylobacter jejuni ssp. jejuni 81116		15	15
No Yes	Campylobacter jejuni ssp. jejuni 81-176		14	14
No Yes	Campylobacter jejuni ssp. doylei 269.97		16	16
No Yes	Helicobacter pylori B38		7	7
No Yes	Helicobacter pylori P12		7	7
No Yes	Helicobacter pylori G27		7	7
No Yes	Helicobacter pylori Shi470		7	7
No Yes	Helicobacter pylori HPAG1		7	7
No Yes	Helicobacter pylori J99		7	7
No Yes	Desulfovibrio vulgaris DP4		15	14
No Yes	Desulfovibrio vulgaris Miyazaki F		16	15
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans ATCC 27774		8	8
No Yes	Geobacter sp. M21		28	28
No Yes	Anaeromyxobacter sp. K		41	38
No Yes	Anaeromyxobacter dehalogenans 2CP-1		43	40
No Yes	Azoarcus sp. BH72		52	51
No Yes	Neisseria meningitidis alpha14		23	22
No Yes	Neisseria meningitidis 053442		23	22
No Yes	Neisseria meningitidis FAM18		23	22
No Yes	Neisseria meningitidis MC58		23	22
No Yes	Neisseria gonorrhoeae NCCP11945		23	22
No Yes	Ralstonia eutropha H16		69	69
No Yes	Ralstonia pickettii 12D		61	60
No Yes	Polynucleobacter necessarius ssp. necessarius STIR1		20	19
No Yes	Burkholderia sp. CCGE1002		63	61
No Yes	Burkholderia pseudomallei MSHR346		41	41
No Yes	Burkholderia pseudomallei 1106a		57	56
No Yes	Burkholderia pseudomallei 668		56	55
No Yes	Burkholderia pseudomallei 1710b		54	53
No Yes	Burkholderia mallei NCTC 10229		50	50
No Yes	Burkholderia mallei NCTC 10247		50	50
No Yes	Burkholderia mallei SAVP1		48	48
No Yes	Burkholderia ambifaria MC40-6		62	61
No Yes	Burkholderia cenocepacia MC0-3		66	65
No Yes	Burkholderia cenocepacia HI2424		63	62
No Yes	Burkholderia cenocepacia J2315		67	66
No Yes	Burkholderia multivorans ATCC 17616		60	59
No Yes	Caulobacter crescentus NA1000		50	48
No Yes	Zymomonas mobilis ssp. mobilis NCIMB 11163		15	15
No Yes	Rhodobacter sphaeroides KD131		32	32
No Yes	Rhodobacter sphaeroides ATCC 17025		25	25
No Yes	Rhodobacter sphaeroides ATCC 17029		34	34
No Yes	Gluconacetobacter diazotrophicus PAl 5		44	43
No Yes	Ehrlichia ruminantium Gardel		14	14
No Yes	Ehrlichia ruminantium Welgevonden		14	14
No Yes	Anaplasma marginale Florida		15	15
No Yes	Orientia tsutsugamushi Ikeda		19	19
No Yes	Rickettsia bellii OSU 85-389		12	12
No Yes	Rickettsia rickettsii Iowa		12	12
No Yes	Methylobacterium extorquens DM4		59	59
No Yes	Methylobacterium extorquens AM1		60	60
No Yes	Brucella suis ATCC 23445		28	28
No Yes	Brucella melitensis ATCC 23457		27	27
No Yes	Brucella abortus S19		28	28
No Yes	Brucella melitensis biov. Abortus 2308		28	28
No Yes	Rhizobium etli CIAT 652		50	50
No Yes	Rhizobium leguminosarum bv. trifolii WSM2304		46	46
No Yes	Rhizobium leguminosarum bv. trifolii WSM1325		52	52
No Yes	Rhodopseudomonas palustris TIE-1		49	49
No Yes	Rhodopseudomonas palustris HaA2		54	54
No Yes	Rhodopseudomonas palustris BisB5		50	50
No Yes	Rhodopseudomonas palustris BisB18		44	44
No Yes	Rhodopseudomonas palustris BisA53		46	46
No Yes	Bradyrhizobium sp. BTAi1		85	85
No Yes	Acidithiobacillus ferrooxidans ATCC 53993		31	31
No Yes	Haemophilus somnus 2336		15	15
No Yes	Haemophilus influenzae PittGG		21	21
No Yes	Haemophilus influenzae PittEE		20	20
No Yes	Haemophilus influenzae 86-028NP		21	21
No Yes	Actinobacillus pleuropneumoniae ser. 3 JL03		20	20
No Yes	Actinobacillus pleuropneumoniae ser. 7 AP76		20	20
No Yes	Vibrio fischeri MJ11		34	34
No Yes	Vibrio vulnificus CMCP6 (Poor annotation)		38	37
No Yes	Vibrio cholerae M66-2		30	30
No Yes	Vibrio cholerae O395		30	30
No Yes	Vibrio cholerae MJ-1236		32	32
No Yes	Shewanella sp. W3-18-1		50	49
No Yes	Shewanella sp. ANA-3		50	48
No Yes	Shewanella baltica OS223		51	49
No Yes	Shewanella baltica OS185		51	49
No Yes	Shewanella baltica OS195		50	48
No Yes	Shewanella sp. MR-4		50	48
No Yes	Stenotrophomonas maltophilia K279a		56	55
No Yes	Xylella fastidiosa M23		26	25
No Yes	Xylella fastidiosa M12		24	23
No Yes	Xylella fastidiosa Temecula1		26	25
No Yes	Xanthomonas campestris pv. vesicatoria 85-10 (Completed 2005)		53	52
No Yes	Xanthomonas oryzae pv. oryzae PXO99A		43	42
No Yes	Xanthomonas oryzae pv. oryzae MAFF 311018		41	40
No Yes	Xanthomonas campestris pv. campestris B100		48	47
No Yes	Xanthomonas campestris pv. campestris 8004 (Completed 2005)		48	47
No Yes	Thioalkalivibrio sp. K90mix		41	39
No Yes	Coxiella burnetii CbuK_Q154		15	15
No Yes	Coxiella burnetii CbuG_Q212		15	15
No Yes	Coxiella burnetii Dugway 5J108-111		15	15
No Yes	Coxiella burnetii RSA 331		15	15
No Yes	Legionella pneumophila Corby		28	28
No Yes	Legionella pneumophila Paris		27	27
No Yes	Legionella pneumophila Lens		27	27
No Yes	Dickeya dadantii Ech586		35	34
No Yes	Candidatus Blochmannia pennsylvanicus BPEN		7	7
No Yes	Buchnera aphidicola Cc		4	4
No Yes	Buchnera aphidicola Bp		5	5
No Yes	Buchnera aphidicola Tuc7		5	5
No Yes	Buchnera aphidicola 5A		5	5
No Yes	Buchnera aphidicola Sg		6	6
No Yes	Yersinia pseudotuberculosis PB1/+		27	27
No Yes	Yersinia pseudotuberculosis YPIII		27	27
No Yes	Yersinia pseudotuberculosis IP 31758		26	26
No Yes	Yersinia pestis Z176003		23	23
No Yes	Yersinia pestis Pestoides F		26	26
No Yes	Yersinia pestis Nepal516		26	26
No Yes	Yersinia pestis Antiqua		26	26
No Yes	Yersinia pestis Angola		25	25
No Yes	Yersinia pestis biov. Microtus 91001		26	26
No Yes	Yersinia pestis KIM		28	28
No Yes	Shigella flexneri 5 8401		32	31
No Yes	Shigella flexneri 2a 301		32	31
No Yes	Shigella boydii CDC 3083-94		34	33
No Yes	Salmonella enterica ssp. arizonae ser. 62:z4,z23:--		39	38
No Yes	Salmonella enterica ssp. enterica ser. Schwarzengrund CVM19633		41	41
No Yes	Salmonella enterica ssp. enterica ser. Enteritidis P125109		44	43
No Yes	Salmonella enterica ssp. enterica ser. Choleraesuis str. SC-B67		40	39
No Yes	Salmonella enterica ssp. enterica ser. Newport SL254		42	42
No Yes	Salmonella enterica ssp. enterica ser. Dublin CT_02021853		39	39
No Yes	Salmonella enterica ssp. enterica ser. Typhi CT18		42	41
No Yes	Salmonella enterica ssp. enterica ser. Typhi Ty2		42	41
No Yes	Salmonella enterica ssp. enterica ser. Agona SL483		40	40
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi C RKS4594		41	40
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi B SPB7		44	43
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A AKU_12601		42	41
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A ATCC 9150		42	41
No Yes	Salmonella enterica ssp. enterica ser. Heidelberg SL476		42	42
No Yes	Salmonella enterica ssp. enterica ser. Gallinarum 287/91		40	39
No Yes	Klebsiella pneumoniae 342		46	45
No Yes	Klebsiella pneumoniae NTUH-K2044		45	44
No Yes	Escherichia coli ED1a		33	32
No Yes	Escherichia coli IAI39		30	29
No Yes	Escherichia coli UMN026		34	33
No Yes	Escherichia coli 55989		33	32
No Yes	Escherichia coli S88		33	32
No Yes	Escherichia coli IAI1		33	32
No Yes	Escherichia coli BL21		33	32
No Yes	Escherichia coli ATCC 8739		33	32
No Yes	Escherichia coli BL21(DE3)		32	31
No Yes	Escherichia coli SMS-3-5		34	33
No Yes	Escherichia coli SE11		33	32
No Yes	Escherichia coli APEC O1		30	29
No Yes	Escherichia coli O103:H2 12009		33	32
No Yes	Escherichia coli UTI89		34	33
No Yes	Escherichia coli 536		34	33
No Yes	Escherichia coli HS		33	32
No Yes	Escherichia coli E24377A		31	30
No Yes	Escherichia coli O55:H7 CB9615		34	33
No Yes	Escherichia coli O26:H11 11368		33	32
No Yes	Escherichia coli CFT073		33	32
No Yes	Escherichia coli O111:H- 11128		32	31
No Yes	Escherichia coli O127:H6 E2348/69		33	32
No Yes	Escherichia coli O157:H7 EDL933		34	33
No Yes	Escherichia coli O157:H7 TW14359		34	33
No Yes	Escherichia coli O157:H7 EC4115		34	33
No Yes	Escherichia coli O157:H7 Sakai		34	33
No Yes	Escherichia coli BW2952		33	32
No Yes	Escherichia coli K-12 subW3110		34	33
No Yes	Escherichia coli K-12 subDH10B		38	36
No Yes	Escherichia coli B REL606		33	32
No Yes	Erwinia amylovora CFBP1430		27	27
No Yes	Pseudomonas syringae pv. phaseolicola 1448A		42	41
No Yes	Pseudomonas syringae pv. syringae B728a		48	47
No Yes	Pseudomonas putida W619		58	57
No Yes	Pseudomonas putida F1		64	63
No Yes	Pseudomonas putida GB-1		59	58
No Yes	Pseudomonas fluorescens SBW25		59	58
No Yes	Pseudomonas fluorescens Pf0-1		62	61
No Yes	Pseudomonas aeruginosa LESB58		61	60
No Yes	Pseudomonas aeruginosa PA7		65	63
No Yes	Pseudomonas aeruginosa UCBPP-PA14		61	60
No Yes	Acinetobacter baumannii AB307-0294		35	32
No Yes	Acinetobacter baumannii AYE		38	35
No Yes	Acinetobacter baumannii SDF		24	23
No Yes	Acinetobacter baumannii AB0057		38	35
No Yes	Acinetobacter baumannii ACICU		38	35
No Yes	Francisella novicida U112		22	22
No Yes	Francisella tularensis ssp. mediasiatica FSC147		19	19
No Yes	Francisella tularensis ssp. holarctica FTNF002-00		19	19
No Yes	Francisella tularensis ssp. holarctica OSU18		19	19
No Yes	Francisella tularensis ssp. holarctica		19	19
No Yes	Francisella tularensis ssp. tularensis WY96-3418		18	18
No Yes	Francisella tularensis ssp. tularensis FSC198		18	18
No Yes	Prochlorococcus marinus NATL1A		25	25
No Yes	Prochlorococcus marinus MIT 9301		23	23
No Yes	Prochlorococcus marinus MIT 9515		21	21
No Yes	Prochlorococcus marinus AS9601		23	23
No Yes	Prochlorococcus marinus ssp. marinus CCMP1375		22	22
No Yes	Prochlorococcus marinus ssp. pastoris CCMP1986		22	22
No Yes	Prochlorococcus marinus MIT 9215		22	22
No Yes	Prochlorococcus marinus MIT 9211		22	22
No Yes	Prochlorococcus marinus MIT 9312		22	22
No Yes	Prochlorococcus marinus MIT 9303		24	24
No Yes	Prochlorococcus marinus NATL2A		23	23
No Yes	Cyanothece sp. PCC 8802		43	43
No Yes	Cyanothece sp. PCC 7425		46	46
No Yes	Cyanothece sp. PCC 7424		42	42
No Yes	Cyanothece sp. PCC 8801		43	43
No Yes	Synechococcus sp. JA-2-3Ba(2-13) (Poor annotation)		27	27
No Yes	Synechococcus sp. JA-3-3Ab (Poor annotation)		27	27
No Yes	Synechococcus sp. CC9902 (Poor annotation)		25	25
No Yes	Synechococcus sp. RCC307		26	26
No Yes	Synechococcus sp. CC9605 (Poor annotation)		27	27
No Yes	Synechococcus sp. WH 8102 (Good annotation)		26	26
No Yes	Synechococcus sp. CC9311		27	27
No Yes	Synechococcus sp. WH 7803		25	25
No Yes	Synechococcus sp. PCC 7002		33	33
No Yes	Synechococcus elongatus PCC 7942		28	28
No Yes	Methanococcus maripaludis C6		5	5
No Yes	Methanococcus maripaludis C7		5	5
No Yes	Methanococcus maripaludis C5		4	4
No Yes	Sulfolobus islandicus Y.G.57.14		15	14
No Yes	Sulfolobus islandicus L.S.2.15		14	13
No Yes	Sulfolobus islandicus M.16.27		13	12
No Yes	Sulfolobus islandicus M.14.25		14	13
No Yes	Sulfolobus islandicus M.16.4		14	13
No Yes	Sulfolobus islandicus L.D.8.5		14	13
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	163	132
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		52	52
No Yes	Lotus japonicus (Early assembly)		39	36
No Yes	Prunus persica (Early draft)	Peach	263	239
No Yes	Manihot esculenta (Early draft)	Cassava	307	276
No Yes	Ricinus communis (Early assembly)	Castor bean	231	211
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	252	223
No Yes	Phoenix dactylifera (Early draft)	Date palm	124	103
No Yes	Trypanosoma vivax (Parial)		57	54
No Yes	Trypanosoma congolense (Partial)		59	54
No Yes	Toxoplasma gondii GT1 (Early assembly)		62	46
No Yes	Toxoplasma gondii VEG (Early assembly)		63	46
No Yes	Toxoplasma gondii RH (Archived)		65	49
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	164	131
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	151	122
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	114	90
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	146	118
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	159	128
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	168	133
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	105	83
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	118	89
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	106	84
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	180	150
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	161	130
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	96	74
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	126	102
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	141	110
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	124	101
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	135	110
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	116	93
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	121	98
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	159	125
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	100	77
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	140	109
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	151	120
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	97	74
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	158	122
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	105	81
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	140	108
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	93	71
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	101	83
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	123	100
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	96	77
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	112	88
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	106	84
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	110	85
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	147	113
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	100	81
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	139	106
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	116	91
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	114	89
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	115	88
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	131	105
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	147	111
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	146	111
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	146	108
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	148	114
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	143	106
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		90	74
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		115	91
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	70	56
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	191	148
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	138	115
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	114	91
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	114	93
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	176	150
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	176	150
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	264	238
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	363	326
No Yes	NCBI viral sequences (Viral)		141	141
No Yes	PDB chains (SCOP 1.73) (PDB)		291	282
No Yes	TargetDB (Targets)		1740	1651
No Yes	UniProt 15.0 (UniProt)		52017	49030
No Yes	UniProt 15.0 viral sequences (Viral)		147	147