Ribonuclease H-like superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		123986	123986
No Yes	Homo sapiens 49_36k (all transcripts)	Human	109	108
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	82	81
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	41	40
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	63	63
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	86	85
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	105	103
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	40	39
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	40	40
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	33	32
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	73	73
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	99	99
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	41	41
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	39	39
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	53	52
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	32	32
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	37	37
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	37	37
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	34	34
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	62	60
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	29	29
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	46	45
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	72	71
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	43	42
No Yes	Equus caballus 49_2 (all transcripts)	Horse	62	60
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	38	37
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	47	46
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	34	34
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	33	33
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	45	44
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	37	37
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	33	33
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	37	35
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	41	41
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	74	73
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	56	56
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	51	51
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	56	53
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	41	41
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	41	41
No Yes	Xenopus laevis	African clawed frog	71	71
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	161	158
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	91	91
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	80	80
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	63	63
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	59	59
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	119	112
No Yes	Branchiostoma floridae 1.0	Florida lancelet	69	67
No Yes	Ciona savignyi 49_2f (all transcripts)		87	87
No Yes	Ciona intestinalis 49_2i (all transcripts)		122	122
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	324	318
No Yes	Helobdella robusta		153	153
No Yes	Capitella sp. I		146	146
No Yes	Bombyx mori	Domestic silkworm	172	168
No Yes	Nasonia vitripennis	Jewel wasp	292	287
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	71	71
No Yes	Drosophila grimshawi 1.3		32	32
No Yes	Drosophila willistoni 1.3		51	51
No Yes	Drosophila pseudoobscura 2.3		57	57
No Yes	Drosophila persimilis 1.3		58	58
No Yes	Drosophila yakuba 1.3		35	35
No Yes	Drosophila simulans 1.3		27	27
No Yes	Drosophila sechellia 1.3		33	33
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	50	50
No Yes	Drosophila erecta 1.3		32	32
No Yes	Drosophila ananassae 1.3		43	43
No Yes	Drosophila virilis 1.2		33	33
No Yes	Drosophila mojavensis 1.3		37	37
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	39	39
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	76	75
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	28	28
No Yes	Tribolium castaneum 3.0	Red flour beetle	229	222
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	30	30
No Yes	Acyrthosiphon pisum	Pea aphid	198	198
No Yes	Daphnia pulex	Common water flea	164	164
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	77	77
No Yes	Lottia gigantea		61	61
No Yes	Pristionchus pacificus		103	101
No Yes	Meloidogyne incognita	Southern root-knot nematode	305	305
No Yes	Meloidogyne hapla		157	157
No Yes	Brugia malayi	Agent of lymphatic filariasis	62	61
No Yes	Caenorhabditis japonica		264	262
No Yes	Caenorhabditis brenneri		151	143
No Yes	Caenorhabditis remanei		389	384
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	115	109
No Yes	Caenorhabditis briggsae 2		148	144
No Yes	Schistosoma mansoni		36	36
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	82	81
No Yes	Hydra magnipapillata		457	457
No Yes	Trichoplax adhaerens		32	32
No Yes	Proterospongia sp. ATCC 50818		19	19
No Yes	Monosiga brevicollis		24	24
No Yes	Capsaspora owczarzaki ATCC 30864		25	24
No Yes	Malassezia globosa CBS 7966		15	15
No Yes	Ustilago maydis		40	40
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		334	334
No Yes	Melampsora laricis-populina		46	46
No Yes	Sporobolomyces roseus IAM 13481		15	15
No Yes	Serpula lacrymans var. lacrymans S7.9		44	44
No Yes	Coprinopsis cinerea okayama7 130		242	241
No Yes	Pleurotus ostreatus	Oyster mushroom	41	41
No Yes	Laccaria bicolor S238N-H82		141	141
No Yes	Agaricus bisporus var. bisporus		64	64
No Yes	Schizophyllum commune		76	75
No Yes	Heterobasidion annosum		60	60
No Yes	Phanerochaete chrysosporium RP-78 2.1		161	161
No Yes	Postia placenta		61	61
No Yes	Tremella mesenterica		39	39
No Yes	Cryptococcus neoformans JEC21		23	23
No Yes	Magnaporthe grisea 70-15		26	26
No Yes	Podospora anserina		31	31
No Yes	Sporotrichum thermophile ATCC 42464		28	28
No Yes	Thielavia terrestris NRRL 8126		32	32
No Yes	Chaetomium globosum CBS 148.51		119	119
No Yes	Neurospora tetrasperma		27	27
No Yes	Neurospora discreta FGSC 8579		22	22
No Yes	Neurospora crassa OR74A		25	25
No Yes	Cryphonectria parasitica	Chestnut blight fungus	26	26
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		162	162
No Yes	Nectria haematococca mpVI		40	40
No Yes	Fusarium verticillioides 7600		24	24
No Yes	Fusarium graminearum		25	25
No Yes	Trichoderma atroviride		28	28
No Yes	Trichoderma reesei 1.2		27	27
No Yes	Trichoderma virens Gv29-8		30	30
No Yes	Verticillium dahliae VdLs.17		24	24
No Yes	Verticillium albo-atrum VaMs.102		24	24
No Yes	Botrytis cinerea B05.10		60	60
No Yes	Sclerotinia sclerotiorum		121	121
No Yes	Alternaria brassicicola		41	41
No Yes	Pyrenophora tritici-repentis		90	90
No Yes	Cochliobolus heterostrophus		32	32
No Yes	Stagonospora nodorum		44	44
No Yes	Mycosphaerella fijiensis CIRAD86		38	38
No Yes	Mycosphaerella graminicola IPO323		44	44
No Yes	Ajellomyces dermatitidis SLH14081		26	26
No Yes	Histoplasma capsulatum class NAmI strain WU24		31	31
No Yes	Microsporum gypseum		22	22
No Yes	Arthroderma benhamiae CBS 112371		25	25
No Yes	Microsporum canis CBS 113480		21	20
No Yes	Trichophyton equinum CBS 127.97		23	23
No Yes	Trichophyton verrucosum HKI 0517		26	26
No Yes	Trichophyton tonsurans CBS 112818		24	24
No Yes	Trichophyton rubrum CBS 118892		26	26
No Yes	Paracoccidioides brasiliensis Pb18		26	26
No Yes	Coccidioides posadasii RMSCC 3488		26	26
No Yes	Coccidioides immitis RS		23	23
No Yes	Uncinocarpus reesii 1704		26	26
No Yes	Aspergillus fumigatus Af293		52	52
No Yes	Neosartorya fischeri NRRL 181		26	26
No Yes	Penicillium chrysogenum Wisconsin 54-1255		60	60
No Yes	Penicillium marneffei ATCC 18224		112	112
No Yes	Aspergillus carbonarius ITEM 5010		30	30
No Yes	Aspergillus terreus NIH2624		36	36
No Yes	Aspergillus oryzae RIB40		31	31
No Yes	Aspergillus niger ATCC 1015		18	18
No Yes	Aspergillus flavus NRRL3357		28	28
No Yes	Aspergillus clavatus NRRL 1		23	23
No Yes	Aspergillus nidulans FGSC A4		56	56
No Yes	Tuber melanosporum Vittad	Perigord truffle	833	831
No Yes	Candida dubliniensis CD36		31	31
No Yes	Candida tropicalis MYA-3404		24	24
No Yes	Candida parapsilosis		19	19
No Yes	Candida albicans SC5314		27	27
No Yes	Yarrowia lipolytica CLIB122		47	47
No Yes	Candida lusitaniae ATCC 42720		22	22
No Yes	Vanderwaltozyma polyspora DSM 70294		44	44
No Yes	Candida glabrata CBS138		16	16
No Yes	Kluyveromyces thermotolerans CBS 6340		18	18
No Yes	Lachancea kluyveri		20	20
No Yes	Kluyveromyces waltii		55	55
No Yes	Lodderomyces elongisporus NRRL YB-4239		46	46
No Yes	Ashbya gossypii ATCC 10895		16	16
No Yes	Debaromyces hansenii		24	24
No Yes	Zygosaccharomyces rouxii		18	18
No Yes	Saccharomyces mikatae MIT		25	25
No Yes	Saccharomyces paradoxus MIT		22	22
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	64	64
No Yes	Saccharomyces bayanus MIT		28	28
No Yes	Candida guilliermondii ATCC 6260		119	119
No Yes	Pichia stipitis CBS 6054		19	19
No Yes	Pichia pastoris GS115		14	14
No Yes	Kluyveromyces lactis		16	16
No Yes	Schizosaccharomyces octosporus yFS286		19	19
No Yes	Schizosaccharomyces japonicus yFS275		20	20
No Yes	Schizosaccharomyces pombe	Fission yeast	30	30
No Yes	Allomyces macrogynus ATCC 38327		63	63
No Yes	Rhizopus oryzae RA 99-880		321	319
No Yes	Phycomyces blakesleeanus		35	35
No Yes	Mucor circinelloides		29	29
No Yes	Encephalitozoon intestinalis		6	6
No Yes	Encephalitozoon cuniculi		6	6
No Yes	Spizellomyces punctatus DAOM BR117		62	61
No Yes	Batrachochytrium dendrobatidis JEL423		67	66
No Yes	Dictyostelium discoideum		64	64
No Yes	Dictyostelium purpureum		56	56
No Yes	Entamoeba dispar		24	24
No Yes	Entamoeba invadens		49	49
No Yes	Entamoeba histolytica 1		17	17
No Yes	Arabidopsis lyrata	Lyrate rockcress	121	121
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	156	156
No Yes	Carica papaya	Papaya	82	82
No Yes	Medicago truncatula	Barrel medic	995	799
No Yes	Glycine max	Soybean	339	297
No Yes	Cucumis sativus	Cucumber	216	215
No Yes	Populus trichocarpa 1.1	Black cottonwood	238	238
No Yes	Vitis vinifera	Wine grape	189	189
No Yes	Brachypodium distachyon		253	251
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	4876	4121
No Yes	Zea mays subsp. mays	Maize	173	173
No Yes	Sorghum bicolor	Sorghum	445	440
No Yes	Selaginella moellendorffii		81	81
No Yes	Physcomitrella patens subsp. patens		89	89
No Yes	Coccomyxa sp. C-169		28	26
No Yes	Chlorella sp. NC64A		34	34
No Yes	Chlorella vulgaris		28	26
No Yes	Volvox carteri f. nagariensis		77	77
No Yes	Chlamydomonas reinhardtii 4.0		43	43
No Yes	Ostreococcus sp. RCC809		21	21
No Yes	Ostreococcus lucimarinus CCE9901		24	24
No Yes	Ostreococcus tauri		27	26
No Yes	Micromonas sp. RCC299		26	26
No Yes	Micromonas pusilla CCMP1545		29	29
No Yes	Cyanidioschyzon merolae		16	16
No Yes	Giardia lamblia		12	12
No Yes	Trypanosoma cruzi strain CL Brener		47	47
No Yes	Trypanosoma brucei		26	26
No Yes	Leishmania mexicana		28	28
No Yes	Leishmania major strain Friedlin		28	28
No Yes	Leishmania infantum JPCM5		28	28
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		31	31
No Yes	Aureococcus anophagefferens		27	27
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	493	469
No Yes	Phytophthora sojae 1.1		1099	1008
No Yes	Phytophthora infestans T30-4		383	383
No Yes	Phytophthora capsici		178	175
No Yes	Phaeodactylum tricornutum		113	112
No Yes	Fragilariopsis cylindrus		125	123
No Yes	Thalassiosira pseudonana		42	42
No Yes	Paramecium tetraurelia		55	54
No Yes	Tetrahymena thermophila SB210 1		51	50
No Yes	Babesia bovis T2Bo		13	13
No Yes	Theileria parva		10	10
No Yes	Theileria annulata		11	11
No Yes	Plasmodium falciparum 3D7		15	15
No Yes	Plasmodium vivax SaI-1		15	15
No Yes	Plasmodium knowlesi strain H		15	15
No Yes	Plasmodium yoelii ssp. yoelii 1		15	14
No Yes	Plasmodium chabaudi		18	18
No Yes	Plasmodium berghei ANKA		15	15
No Yes	Cryptosporidium hominis		6	6
No Yes	Cryptosporidium muris		9	9
No Yes	Cryptosporidium parvum Iowa II		8	8
No Yes	Neospora caninum Nc-Liverpool		20	20
No Yes	Neospora caninum		18	18
No Yes	Toxoplasma gondii ME49		21	21
No Yes	Naegleria gruberi		44	44
No Yes	Trichomonas vaginalis		3066	3065
No Yes	Guillardia theta		1	1
No Yes	Emiliania huxleyi CCMP1516		90	90
No Yes	Candidatus Phytoplasma mali		5	5
No Yes	Aster yellows witches-broom phytoplasma AYWB		15	15
No Yes	Onion yellows phytoplasma OY-M		15	15
No Yes	Acholeplasma laidlawii PG-8A		9	9
No Yes	Mesoplasma florum L1		5	5
No Yes	Ureaplasma parvum ser. 3 ATCC 700970		6	6
No Yes	Ureaplasma urealyticum ser. 10 ATCC 33699		5	5
No Yes	Mycoplasma mycoides ssp. mycoides SC PG1		65	65
No Yes	Mycoplasma capricolum ssp. capricolum ATCC 27343		7	7
No Yes	Mycoplasma crocodyli MP145		4	4
No Yes	Mycoplasma conjunctivae		8	8
No Yes	Mycoplasma penetrans HF-2		25	25
No Yes	Mycoplasma mobile 163K		5	5
No Yes	Mycoplasma arthritidis 158L3-1		4	4
No Yes	Mycoplasma agalactiae PG2		4	4
No Yes	Mycoplasma synoviae 53		7	7
No Yes	Mycoplasma pulmonis UAB CTIP		8	8
No Yes	Mycoplasma pneumoniae M129		3	3
No Yes	Mycoplasma hyopneumoniae 232		5	5
No Yes	Mycoplasma hominis		4	4
No Yes	Mycoplasma genitalium G37		2	2
No Yes	Mycoplasma gallisepticum R		5	5
No Yes	Aminobacterium colombiense DSM 12261		6	6
No Yes	Thermanaerovibrio acidaminovorans DSM 6589		5	5
No Yes	Brachyspira hyodysenteriae WA1		6	6
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis L550		37	37
No Yes	Leptospira interrogans ser. Lai 56601		25	25
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Paris)		12	12
No Yes	Treponema pallidum ssp. pallidum Nichols		4	4
No Yes	Treponema denticola ATCC 35405		12	12
No Yes	Borrelia garinii PBi		3	3
No Yes	Borrelia afzelii PKo		3	3
No Yes	Borrelia burgdorferi B31		3	3
No Yes	Borrelia recurrentis A1		3	3
No Yes	Borrelia duttonii Ly		3	3
No Yes	Borrelia turicatae 91E135		4	4
No Yes	Borrelia hermsii DAH		3	3
No Yes	Rhodopirellula baltica SH 1		45	45
No Yes	Pirellula staleyi DSM 6068		10	10
No Yes	Gardnerella vaginalis 409-05		10	10
No Yes	Bifidobacterium longum NCC2705		9	9
No Yes	Bifidobacterium animalis ssp. lactis AD011		9	9
No Yes	Bifidobacterium dentium Bd1		18	18
No Yes	Bifidobacterium adolescentis ATCC 15703		18	18
No Yes	Kineococcus radiotolerans SRS30216		13	13
No Yes	Catenulispora acidiphila DSM 44928		14	14
No Yes	Stackebrandtia nassauensis DSM 44728		11	11
No Yes	Acidothermus cellulolyticus 11B		10	10
No Yes	Nakamurella multipartita DSM 44233		64	64
No Yes	Geodermatophilus obscurus DSM 43160		18	18
No Yes	Frankia sp. CcI3		43	43
No Yes	Frankia alni ACN14a		16	16
No Yes	Thermobifida fusca YX		12	12
No Yes	Thermomonospora curvata DSM 43183		13	13
No Yes	Streptosporangium roseum DSM 43021		22	22
No Yes	Streptomyces griseus ssp. griseus NBRC 13350		18	18
No Yes	Streptomyces avermitilis MA-4680		38	37
No Yes	Streptomyces scabiei 87.22		37	37
No Yes	Streptomyces coelicolor A3(2)		28	28
No Yes	Actinosynnema mirum DSM 43827		18	18
No Yes	Saccharomonospora viridis DSM 43017		9	9
No Yes	Saccharopolyspora erythraea NRRL 2338		59	59
No Yes	Kribbella flavida DSM 17836		9	9
No Yes	Nocardioides sp. JS614		22	22
No Yes	Propionibacterium acnes KPA171202		10	10
No Yes	Salinispora arenicola CNS-205		24	24
No Yes	Salinispora tropica CNB-440		23	23
No Yes	Gordonia bronchialis DSM 43247		55	55
No Yes	Rhodococcus jostii RHA1		34	34
No Yes	Rhodococcus opacus B4		13	13
No Yes	Rhodococcus erythropolis PR4		17	17
No Yes	Nocardia farcinica IFM 10152		18	18
No Yes	Mycobacterium abscessus		14	14
No Yes	Mycobacterium sp. MCS		39	39
No Yes	Mycobacterium avium ssp. paratuberculosis K-10		23	23
No Yes	Mycobacterium vanbaalenii PYR-1		47	47
No Yes	Mycobacterium tuberculosis H37Rv		33	33
No Yes	Mycobacterium bovis AF2122/97		18	18
No Yes	Mycobacterium ulcerans Agy99		10	10
No Yes	Mycobacterium gilvum PYR-GCK		50	50
No Yes	Mycobacterium marinum M		34	34
No Yes	Mycobacterium smegmatis MC2 155		34	34
No Yes	Mycobacterium leprae TN		7	7
No Yes	Corynebacterium aurimucosum		48	48
No Yes	Corynebacterium kroppenstedtii DSM 44385		12	12
No Yes	Corynebacterium efficiens YS-314		48	48
No Yes	Corynebacterium urealyticum DSM 7109		32	32
No Yes	Corynebacterium jeikeium K411		49	49
No Yes	Corynebacterium glutamicum ATCC 13032 Kitasato		25	25
No Yes	Corynebacterium diphtheriae NCTC 13129		28	28
No Yes	Tropheryma whipplei Twist		5	5
No Yes	Sanguibacter keddieii DSM 10542		10	10
No Yes	Kytococcus sedentarius DSM 20547		25	24
No Yes	Beutenbergia cavernae DSM 12333		9	9
No Yes	Leifsonia xyli ssp. xyli CTCB07		31	31
No Yes	Clavibacter michiganensis ssp. michiganensis NCPPB 382		10	10
No Yes	Jonesia denitrificans DSM 20603		9	9
No Yes	Brachybacterium faecium DSM 4810		12	12
No Yes	Xylanimonas cellulosilytica DSM 15894		14	14
No Yes	Kocuria rhizophila DC2201		16	16
No Yes	Rothia mucilaginosa DY-18		9	9
No Yes	Arthrobacter sp. FB24		13	13
No Yes	Arthrobacter chlorophenolicus A6		10	10
No Yes	Arthrobacter aurescens TC1		17	17
No Yes	Renibacterium salmoninarum ATCC 33209		89	89
No Yes	Micrococcus luteus NCTC 2665		23	23
No Yes	Cryptobacterium curtum DSM 15641		7	7
No Yes	Eggerthella lenta DSM 2243		11	11
No Yes	Slackia heliotrinireducens DSM 20476		15	15
No Yes	Atopobium parvulum DSM 20469		10	10
No Yes	Conexibacter woesei DSM 14684		12	12
No Yes	Rubrobacter xylanophilus DSM 9941		12	12
No Yes	Acidimicrobium ferrooxidans DSM 10331		28	28
No Yes	Denitrovibrio acetiphilus DSM 12809		55	55
No Yes	Deferribacter desulfuricans SSM1		7	7
No Yes	Kosmotoga olearia TBF 19.5.1		34	34
No Yes	Petrotoga mobilis SJ95		10	10
No Yes	Fervidobacterium nodosum Rt17-B1		20	20
No Yes	Thermosipho melanesiensis BI429		9	9
No Yes	Thermosipho africanus TCF52B		35	35
No Yes	Thermotoga lettingae TMO		9	9
No Yes	Thermotoga sp. RQ2		9	9
No Yes	Thermotoga naphthophila RKU-10		10	10
No Yes	Thermotoga petrophila RKU-1		9	9
No Yes	Thermotoga neapolitana DSM 4359		10	10
No Yes	Thermotoga maritima MSB8		9	9
No Yes	Dehalococcoides sp. CBDB1		8	8
No Yes	Dehalococcoides ethenogenes 195		7	7
No Yes	Thermomicrobium roseum DSM 5159		9	9
No Yes	Sphaerobacter thermophilus DSM 20745		12	12
No Yes	Herpetosiphon aurantiacus ATCC 23779		33	33
No Yes	Roseiflexus sp. RS-1		15	15
No Yes	Roseiflexus castenholzii DSM 13941		19	19
No Yes	Chloroflexus sp. Y-400-fl		12	12
No Yes	Chloroflexus aggregans DSM 9485		9	9
No Yes	Chloroflexus aurantiacus J-10-fl		12	12
No Yes	Sulfurihydrogenibium sp. YO3AOP1		13	13
No Yes	Sulfurihydrogenibium azorense Az-Fu1		20	20
No Yes	Persephonella marina EX-H1		11	11
No Yes	Hydrogenobaculum sp. Y04AAS1		7	7
No Yes	Thermocrinis albus DSM 14484		6	6
No Yes	Aquifex aeolicus VF5		8	8
No Yes	Hydrogenobacter thermophilus TK-6		9	9
No Yes	Gemmatimonas aurantiaca T-27		18	18
No Yes	Fibrobacter succinogenes ssp. succinogenes S85		11	11
No Yes	Candidatus Koribacter versatilis Ellin345		6	6
No Yes	Candidatus Solibacter usitatus Ellin6076		60	60
No Yes	Acidobacterium capsulatum ATCC 51196		23	23
No Yes	Elusimicrobium minutum Pei191		6	6
No Yes	uncultured Termite group 1 bacterium phylotype Rs-D17		6	6
No Yes	Pelodictyon phaeoclathratiforme BU-1		16	16
No Yes	Pelodictyon luteolum DSM 273		12	12
No Yes	Chlorobium chlorochromatii CaD3		6	6
No Yes	Chlorobium phaeobacteroides DSM 266		43	43
No Yes	Chlorobium phaeovibrioides DSM 265		15	15
No Yes	Chlorobium limicola DSM 245		22	22
No Yes	Chlorobaculum parvum NCIB 8327		9	9
No Yes	Chlorobium tepidum TLS		10	10
No Yes	Chloroherpeton thalassium ATCC 35110		10	10
No Yes	Prosthecochloris aestuarii DSM 271		20	20
No Yes	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2		5	5
No Yes	Prevotella ruminicola 23		11	11
No Yes	Parabacteroides distasonis ATCC 8503		15	15
No Yes	Porphyromonas gingivalis W83		33	33
No Yes	Bacteroides vulgatus ATCC 8482		13	13
No Yes	Bacteroides thetaiotaomicron VPI-5482		30	30
No Yes	Bacteroides fragilis NCTC 9343		11	11
No Yes	Candidatus Amoebophilus asiaticus 5a2		22	22
No Yes	Salinibacter ruber DSM 13855		13	13
No Yes	Rhodothermus marinus DSM 4252		10	10
No Yes	Chitinophaga pinensis DSM 2588		33	33
No Yes	Dyadobacter fermentans DSM 18053		22	22
No Yes	Cytophaga hutchinsonii ATCC 33406		19	19
No Yes	Spirosoma linguale DSM 74		40	40
No Yes	Pedobacter heparinus DSM 2366		10	10
No Yes	Candidatus Sulcia muelleri GWSS		2	2
No Yes	Zunongwangia profunda SM-A87		39	39
No Yes	Gramella forsetii KT0803		17	17
No Yes	Robiginitalea biformata HTCC2501		12	12
No Yes	Flavobacteriaceae bacterium 3519-10		10	10
No Yes	Capnocytophaga ochracea DSM 7271		9	9
No Yes	Flavobacterium psychrophilum JIP02/86		11	11
No Yes	Flavobacterium johnsoniae UW101		16	16
No Yes	Blattabacterium sp. Bge		4	4
No Yes	Dictyoglomus turgidum DSM 6724		6	6
No Yes	Dictyoglomus thermophilum H-6-12		6	6
No Yes	Candidatus Protochlamydia amoebophila UWE25		20	20
No Yes	Chlamydophila pneumoniae TW-183		7	7
No Yes	Chlamydophila caviae GPIC		7	7
No Yes	Chlamydophila felis Fe/C-56		7	7
No Yes	Chlamydophila abortus S26/3		7	7
No Yes	Chlamydia muridarum Nigg		7	7
No Yes	Chlamydia trachomatis D/UW-3/CX		7	7
No Yes	Coraliomargarita akajimensis DSM 45221		8	8
No Yes	Opitutus terrae PB90-1		16	16
No Yes	Methylacidiphilum infernorum V4		6	6
No Yes	Akkermansia muciniphila ATCC BAA-835		8	8
No Yes	Thermodesulfovibrio yellowstonii DSM 11347		11	11
No Yes	Streptobacillus moniliformis DSM 12112		8	7
No Yes	Sebaldella termitidis ATCC 33386		7	7
No Yes	Leptotrichia buccalis DSM 1135		8	8
No Yes	Fusobacterium nucleatum ssp. nucleatum ATCC 25586		14	14
No Yes	Thermobaculum terrenum ATCC BAA-798		7	7
No Yes	Deinococcus deserti VCD115		14	14
No Yes	Deinococcus geothermalis DSM 11300		19	19
No Yes	Deinococcus radiodurans R1		18	18
No Yes	Meiothermus ruber DSM 1279		10	10
No Yes	Thermus thermophilus HB27 (First sequenced)		19	19
No Yes	Natranaerobius thermophilus JW/NM-WN-LF		28	28
No Yes	Symbiobacterium thermophilum IAM 14863		38	38
No Yes	Anaerococcus prevotii DSM 20548		7	7
No Yes	Finegoldia magna ATCC 29328		7	7
No Yes	Clostridiales genomosp. BVAB3 UPII9-5		8	8
No Yes	Anaerocellum thermophilum DSM 6725		18	18
No Yes	Candidatus Desulforudis audaxviator MP104C		18	18
No Yes	Pelotomaculum thermopropionicum SI		40	40
No Yes	Desulfitobacterium hafniense Y51		54	54
No Yes	Desulfotomaculum reducens MI-1		57	57
No Yes	Desulfotomaculum acetoxidans DSM 771		73	73
No Yes	Eubacterium rectale ATCC 33656		17	17
No Yes	Eubacterium eligens ATCC 27750		8	8
No Yes	Syntrophomonas wolfei ssp. wolfei Goettingen		21	21
No Yes	Heliobacterium modesticaldum Ice1		45	45
No Yes	Alkaliphilus oremlandii OhILAs		15	15
No Yes	Alkaliphilus metalliredigens QYMF		48	48
No Yes	Clostridium phytofermentans ISDg		14	14
No Yes	Clostridium novyi NT		8	8
No Yes	Clostridium kluyveri DSM 555		26	26
No Yes	Clostridium cellulolyticum H10		62	62
No Yes	Clostridium beijerinckii NCIMB 8052		19	19
No Yes	Clostridium thermocellum ATCC 27405		61	61
No Yes	Clostridium tetani E88		21	21
No Yes	Clostridium perfringens 13		10	10
No Yes	Clostridium difficile 630		11	11
No Yes	Clostridium botulinum A ATCC 3502		11	11
No Yes	Clostridium acetobutylicum ATCC 824		9	9
No Yes	Veillonella parvula DSM 2008		8	8
No Yes	Acidaminococcus fermentans DSM 20731		15	15
No Yes	Caldicellulosiruptor saccharolyticus DSM 8903		57	57
No Yes	Coprothermobacter proteolyticus DSM 5265		6	6
No Yes	Carboxydothermus hydrogenoformans Z-2901		12	12
No Yes	Moorella thermoacetica ATCC 39073		16	16
No Yes	Ammonifex degensii KC4		21	21
No Yes	Thermoanaerobacter pseudethanolicus ATCC 33223		29	29
No Yes	Thermoanaerobacter sp. X514		17	17
No Yes	Thermoanaerobacter tengcongensis MB4		21	21
No Yes	Thermoanaerobacter italicus Ab9		22	22
No Yes	Halothermothrix orenii H 168		12	12
No Yes	Enterococcus faecalis V583		10	10
No Yes	Oenococcus oeni PSU-1		11	11
No Yes	Leuconostoc citreum KM20		16	16
No Yes	Leuconostoc mesenteroides ssp. mesenteroides ATCC 8293		15	15
No Yes	Lactobacillus casei ATCC 334		80	80
No Yes	Lactobacillus crispatus ST1		19	19
No Yes	Lactobacillus rhamnosus GG		25	25
No Yes	Lactobacillus johnsonii NCC 533		16	16
No Yes	Lactobacillus salivarius UCC118		10	10
No Yes	Lactobacillus fermentum IFO 3956		55	55
No Yes	Lactobacillus sakei ssp. sakei 23K		19	19
No Yes	Lactobacillus reuteri DSM 20016		27	27
No Yes	Lactobacillus gasseri ATCC 33323		9	9
No Yes	Lactobacillus plantarum WCFS1		13	13
No Yes	Lactobacillus helveticus DPC 4571		25	25
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842		14	14
No Yes	Lactobacillus brevis ATCC 367		31	31
No Yes	Lactobacillus acidophilus NCFM		15	15
No Yes	Pediococcus pentosaceus ATCC 25745		9	9
No Yes	Lactococcus lactis ssp. lactis Il1403		46	46
No Yes	Streptococcus gallolyticus UCN34		13	13
No Yes	Streptococcus equi ssp. zooepidemicus MGCS10565		29	29
No Yes	Streptococcus dysgalactiae ssp. equisimilis GGS_124		46	46
No Yes	Streptococcus mitis B6		54	54
No Yes	Streptococcus uberis 0140J		7	7
No Yes	Streptococcus pyogenes M1 GAS		12	12
No Yes	Streptococcus pneumoniae TIGR4 (Virulent)		26	26
No Yes	Streptococcus agalactiae NEM316		10	10
No Yes	Streptococcus mutans UA159		15	15
No Yes	Streptococcus thermophilus LMG 18311 (Older strain)		33	33
No Yes	Streptococcus suis 05ZYH33		18	18
No Yes	Streptococcus sanguinis SK36		8	8
No Yes	Streptococcus gordonii Challis subCH1		6	6
No Yes	Exiguobacterium sp. AT1b		11	11
No Yes	Exiguobacterium sibiricum 255-15		24	24
No Yes	Bacillus tusciae DSM 2912		22	22
No Yes	Alicyclobacillus acidocaldarius ssp. acidocaldarius DSM 446		28	28
No Yes	Brevibacillus brevis NBRC 100599		18	18
No Yes	Paenibacillus sp. JDR-2		14	14
No Yes	Listeria welshimeri ser. 6b SLCC5334		9	9
No Yes	Listeria innocua Clip11262		7	7
No Yes	Listeria seeligeri ser. 1/2b SLCC3954		7	7
No Yes	Listeria monocytogenes EGD-e		9	9
No Yes	Lysinibacillus sphaericus C3-41		15	15
No Yes	Oceanobacillus iheyensis HTE831		10	10
No Yes	Anoxybacillus flavithermus WK1		39	39
No Yes	Geobacillus sp. WCH70		50	50
No Yes	Geobacillus thermodenitrificans NG80-2		20	20
No Yes	Geobacillus kaustophilus HTA426		39	39
No Yes	Bacillus subtilis ssp. subtilis 168		10	10
No Yes	Bacillus licheniformis ATCC 14580		19	19
No Yes	Bacillus amyloliquefaciens FZB42		14	14
No Yes	Bacillus halodurans C-125		26	26
No Yes	Bacillus weihenstephanensis KBAB4		13	13
No Yes	Bacillus thuringiensis ser. konkukian 97-27		20	20
No Yes	Bacillus cereus ATCC 14579		18	18
No Yes	Bacillus anthracis Ames Ancestor		11	11
No Yes	Bacillus pseudofirmus OF4		27	27
No Yes	Bacillus clausii KSM-K16		9	9
No Yes	Bacillus pumilus SAFR-032		12	12
No Yes	Bacillus megaterium QM B1551		12	12
No Yes	Macrococcus caseolyticus JCSC5402		12	12
No Yes	Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305		17	17
No Yes	Staphylococcus lugdunensis HKU09-01		10	10
No Yes	Staphylococcus haemolyticus JCSC1435		16	16
No Yes	Staphylococcus epidermidis RP62A		11	11
No Yes	Staphylococcus carnosus ssp. carnosus TM300		8	8
No Yes	Staphylococcus aureus ssp. aureus NCTC 8325		12	12
No Yes	Nautilia profundicola AmH		9	9
No Yes	Sulfurospirillum deleyianum DSM 6946		28	28
No Yes	Arcobacter butzleri RM4018		12	12
No Yes	Campylobacter hominis ATCC BAA-381		8	8
No Yes	Campylobacter lari RM2100		8	8
No Yes	Campylobacter curvus 525.92		7	7
No Yes	Campylobacter concisus 13826		4	4
No Yes	Campylobacter jejuni ssp. jejuni NCTC 11168		7	7
No Yes	Campylobacter fetus ssp. fetus 82-40		7	7
No Yes	Sulfurimonas denitrificans DSM 1251		12	12
No Yes	Wolinella succinogenes DSM 1740		23	23
No Yes	Helicobacter hepaticus ATCC 51449		8	8
No Yes	Helicobacter mustelae 12198		7	7
No Yes	Helicobacter acinonychis Sheeba		7	7
No Yes	Helicobacter pylori 26695		8	8
No Yes	Nitratiruptor sp. SB155-2		15	15
No Yes	Sulfurovum sp. NBC37-1		9	9
No Yes	Bdellovibrio bacteriovorus HD100		9	9
No Yes	Syntrophus aciditrophicus SB		14	14
No Yes	Syntrophobacter fumaroxidans MPOB		13	13
No Yes	Desulfotalea psychrophila LSv54		10	10
No Yes	Desulfatibacillum alkenivorans AK-01		39	39
No Yes	Desulfobacterium autotrophicum HRM2		42	42
No Yes	Desulfococcus oleovorans Hxd3		8	8
No Yes	Desulfohalobium retbaense DSM 5692		9	9
No Yes	Desulfomicrobium baculatum DSM 4028		17	17
No Yes	Lawsonia intracellularis PHE/MN1-00		6	6
No Yes	Desulfovibrio magneticus RS-1		17	17
No Yes	Desulfovibrio vulgaris Hildenborough		18	18
No Yes	Desulfovibrio salexigens DSM 2638		8	8
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans G20		40	40
No Yes	Pelobacter propionicus DSM 2379		29	29
No Yes	Pelobacter carbinolicus DSM 2380		29	29
No Yes	Geobacter uraniireducens Rf4		57	57
No Yes	Geobacter sp. FRC-32		8	8
No Yes	Geobacter lovleyi SZ		29	29
No Yes	Geobacter bemidjiensis Bem		16	16
No Yes	Geobacter sulfurreducens PCA		28	28
No Yes	Geobacter metallireducens GS-15		30	30
No Yes	Haliangium ochraceum DSM 14365		41	41
No Yes	Sorangium cellulosum So ce 56		46	46
No Yes	Anaeromyxobacter sp. Fw109-5		19	19
No Yes	Anaeromyxobacter dehalogenans 2CP-C		13	13
No Yes	Myxococcus xanthus DK 1622		36	36
No Yes	Magnetococcus sp. MC-1		74	74
No Yes	Sideroxydans lithotrophicus ES-1		13	13
No Yes	Aromatoleum aromaticum EbN1		62	62
No Yes	Dechloromonas aromatica RCB		25	25
No Yes	Thauera sp. MZ1T		35	35
No Yes	Laribacter hongkongensis HLHK9		21	21
No Yes	Chromobacterium violaceum ATCC 12472		17	17
No Yes	Neisseria meningitidis Z2491		18	18
No Yes	Neisseria gonorrhoeae FA 1090		11	11
No Yes	Methylotenera mobilis JLW8		11	11
No Yes	Methylovorus sp. SIP3-4		10	10
No Yes	Methylobacillus flagellatus KT		13	13
No Yes	Thiobacillus denitrificans ATCC 25259		12	12
No Yes	Candidatus Accumulibacter phosphatis clade IIA UW-1		78	78
No Yes	Methylibium petroleiphilum PM1		12	12
No Yes	Leptothrix cholodnii SP-6		28	28
No Yes	Ralstonia eutropha JMP134		12	12
No Yes	Cupriavidus taiwanensis		12	12
No Yes	Ralstonia metallidurans CH34		64	64
No Yes	Ralstonia pickettii 12J		25	25
No Yes	Ralstonia solanacearum GMI1000		38	38
No Yes	Polynucleobacter necessarius ssp. asymbioticus QLW-P1DMWA-1		15	15
No Yes	Burkholderia phytofirmans PsJN		30	30
No Yes	Burkholderia phymatum STM815		20	20
No Yes	Burkholderia thailandensis E264		23	23
No Yes	Burkholderia pseudomallei K96243		18	18
No Yes	Burkholderia mallei ATCC 23344		99	99
No Yes	Burkholderia sp. 383		17	17
No Yes	Burkholderia ambifaria AMMD		22	22
No Yes	Burkholderia cenocepacia AU 1054		27	27
No Yes	Burkholderia multivorans ATCC 17616		46	46
No Yes	Burkholderia vietnamiensis G4		82	82
No Yes	Burkholderia xenovorans LB400		57	57
No Yes	Burkholderia glumae BGR1		40	40
No Yes	Verminephrobacter eiseniae EF01-2		45	45
No Yes	Delftia acidovorans SPH-1		26	26
No Yes	Polaromonas sp. JS666		32	32
No Yes	Polaromonas naphthalenivorans CJ2		33	33
No Yes	Variovorax paradoxus S110		20	20
No Yes	Rhodoferax ferrireducens T118		15	15
No Yes	Diaphorobacter sp. TPSY		19	19
No Yes	Acidovorax sp. JS42		46	46
No Yes	Acidovorax citrulli AAC00-1		59	59
No Yes	Comamonas sp. CNB-1		25	25
No Yes	Herminiimonas arsenicoxydans		23	23
No Yes	Janthinobacterium sp. Marseille		24	24
No Yes	Bordetella petrii DSM 12804		73	73
No Yes	Bordetella avium 197N		10	10
No Yes	Bordetella pertussis Tohama I		225	225
No Yes	Bordetella parapertussis 12822		20	20
No Yes	Bordetella bronchiseptica RB50		13	13
No Yes	Nitrosospira multiformis ATCC 25196		42	42
No Yes	Nitrosomonas eutropha C91		58	57
No Yes	Nitrosomonas europaea ATCC 19718		63	63
No Yes	Caulobacter sp. K31		31	31
No Yes	Caulobacter crescentus CB15		17	17
No Yes	Caulobacter segnis ATCC 21756		11	11
No Yes	Phenylobacterium zucineum HLK1		15	15
No Yes	Erythrobacter litoralis HTCC2594		19	19
No Yes	Sphingopyxis alaskensis RB2256		19	19
No Yes	Novosphingobium aromaticivorans DSM 12444		18	18
No Yes	Sphingobium japonicum UT26S		34	34
No Yes	Sphingomonas wittichii RW1		17	17
No Yes	Zymomonas mobilis ssp. mobilis ZM4		8	8
No Yes	Maricaulis maris MCS10		13	13
No Yes	Hirschia baltica ATCC 49814		12	11
No Yes	Hyphomonas neptunium ATCC 15444		15	15
No Yes	Dinoroseobacter shibae DFL 12		20	20
No Yes	Jannaschia sp. CCS1		15	15
No Yes	Ruegeria sp. TM1040		12	12
No Yes	Ruegeria pomeroyi DSS-3		14	14
No Yes	Roseobacter denitrificans OCh 114		26	26
No Yes	Rhodobacter sphaeroides 2.4.1		14	14
No Yes	Rhodobacter capsulatus SB1003		15	15
No Yes	Paracoccus denitrificans PD1222		19	19
No Yes	Magnetospirillum magneticum AMB-1		38	38
No Yes	Rhodospirillum centenum SW		12	12
No Yes	Rhodospirillum rubrum ATCC 11170		10	10
No Yes	Azospirillum sp. B510		31	31
No Yes	Granulibacter bethesdensis CGDNIH1		12	12
No Yes	Gluconacetobacter diazotrophicus PAl 5		45	45
No Yes	Gluconobacter oxydans 621H		41	41
No Yes	Acetobacter pasteurianus IFO 3283-01		34	34
No Yes	alpha proteobacterium IMCC1322		10	10
No Yes	Candidatus Pelagibacter ubique HTCC1062		8	8
No Yes	Neorickettsia sennetsu Miyayama		7	7
No Yes	Neorickettsia risticii Illinois		7	7
No Yes	Ehrlichia chaffeensis Arkansas		8	8
No Yes	Ehrlichia canis Jake		9	9
No Yes	Ehrlichia ruminantium Welgevonden		9	9
No Yes	Anaplasma phagocytophilum HZ		9	9
No Yes	Anaplasma marginale St. Maries		9	9
No Yes	Anaplasma centrale Israel		9	9
No Yes	Orientia tsutsugamushi Boryong		7	7
No Yes	Rickettsia bellii RML369-C		7	7
No Yes	Rickettsia canadensis McKiel		8	8
No Yes	Rickettsia typhi Wilmington		7	7
No Yes	Rickettsia prowazekii Madrid E		7	7
No Yes	Rickettsia peacockii Rustic		36	36
No Yes	Rickettsia felis URRWXCal2		13	13
No Yes	Rickettsia massiliae MTU5		12	12
No Yes	Rickettsia africae ESF-5		7	7
No Yes	Rickettsia akari Hartford		8	8
No Yes	Rickettsia rickettsii Sheila Smith		7	7
No Yes	Rickettsia conorii Malish 7		7	7
No Yes	Wolbachia endosymbiont of Culex_quinquefasciatus Pel		62	62
No Yes	Wolbachia endosymbiont of Drosophila melanogaster (Genus only)		15	15
No Yes	Wolbachia endosymbiont TRS of Brugia malayi		9	9
No Yes	Wolbachia sp. wRi		20	20
No Yes	Xanthobacter autotrophicus Py2		32	32
No Yes	Azorhizobium caulinodans ORS 571		28	28
No Yes	Methylobacterium chloromethanicum CM4		20	20
No Yes	Methylobacterium extorquens PA1		17	17
No Yes	Methylobacterium sp. 4-46		53	53
No Yes	Methylobacterium populi BJ001		35	35
No Yes	Methylobacterium nodulans ORS 2060		29	29
No Yes	Methylobacterium radiotolerans JCM 2831		16	16
No Yes	Candidatus Hodgkinia cicadicola Dsem		1	1
No Yes	Ochrobactrum anthropi ATCC 49188		21	21
No Yes	Brucella microti CCM 4915		18	18
No Yes	Brucella canis ATCC 23365		21	21
No Yes	Brucella suis 1330		17	17
No Yes	Brucella melitensis bv. 1 16M		20	20
No Yes	Brucella ovis ATCC 25840		18	18
No Yes	Brucella abortus bv. 1 9-941		16	16
No Yes	Sinorhizobium medicae WSM419		14	14
No Yes	Sinorhizobium meliloti 1021		31	31
No Yes	Rhizobium etli CFN 42		11	11
No Yes	Rhizobium sp. NGR234		19	19
No Yes	Rhizobium leguminosarum bv. viciae 3841		15	15
No Yes	Agrobacterium vitis S4		16	16
No Yes	Agrobacterium radiobacter K84		15	15
No Yes	Agrobacterium tumefaciens C58		20	20
No Yes	Candidatus Liberibacter asiaticus psy62		10	10
No Yes	Chelativorans sp. BNC1		10	10
No Yes	Parvibaculum lavamentivorans DS-1		11	11
No Yes	Mesorhizobium loti MAFF303099		27	27
No Yes	Methylocella silvestris BL2		11	11
No Yes	Beijerinckia indica ssp. indica ATCC 9039		9	9
No Yes	Oligotropha carboxidovorans OM5		18	18
No Yes	Rhodopseudomonas palustris CGA009		15	15
No Yes	Nitrobacter winogradskyi Nb-255		71	71
No Yes	Nitrobacter hamburgensis X14		28	28
No Yes	Bradyrhizobium sp. ORS278		15	15
No Yes	Bradyrhizobium japonicum USDA 110		64	64
No Yes	Bartonella tribocorum CIP 105476		18	18
No Yes	Bartonella henselae Houston-1		11	11
No Yes	Bartonella grahamii as4aup		11	11
No Yes	Bartonella quintana Toulouse		8	8
No Yes	Bartonella bacilliformis KC583		8	8
No Yes	Acidithiobacillus ferrooxidans ATCC 23270		22	22
No Yes	Mannheimia succiniciproducens MBEL55E		17	17
No Yes	Aggregatibacter aphrophilus NJ8700		12	12
No Yes	Aggregatibacter actinomycetemcomitans D11S-1		19	19
No Yes	Haemophilus somnus 129PT		11	11
No Yes	Pasteurella multocida ssp. multocida Pm70		10	10
No Yes	Haemophilus parasuis SH0165		13	13
No Yes	Haemophilus ducreyi 35000HP		11	11
No Yes	Haemophilus influenzae Rd KW20		13	13
No Yes	Actinobacillus succinogenes 130Z		12	12
No Yes	Actinobacillus pleuropneumoniae L20		20	20
No Yes	Tolumonas auensis DSM 9187		18	18
No Yes	Aeromonas salmonicida ssp. salmonicida A449		46	46
No Yes	Aeromonas hydrophila ssp. hydrophila ATCC 7966		12	12
No Yes	Aliivibrio salmonicida LFI1238		64	64
No Yes	Vibrio fischeri ES114		18	18
No Yes	Vibrio parahaemolyticus RIMD 2210633		23	23
No Yes	Vibrio harveyi ATCC BAA-1116		282	282
No Yes	Vibrio sp. Ex25		20	20
No Yes	Vibrio splendidus LGP32		31	31
No Yes	Vibrio vulnificus YJ016 (Good annotation)		44	44
No Yes	Vibrio cholerae O1 biov. El Tor N16961		23	23
No Yes	Photobacterium profundum SS9		140	140
No Yes	Psychromonas ingrahamii 37		24	24
No Yes	Idiomarina loihiensis L2TR		23	23
No Yes	Shewanella piezotolerans WP3		29	29
No Yes	Shewanella loihica PV-4		17	17
No Yes	Shewanella halifaxensis HAW-EB4		18	18
No Yes	Shewanella sediminis HAW-EB3		21	21
No Yes	Shewanella denitrificans OS217		39	39
No Yes	Shewanella pealeana ATCC 700345		37	37
No Yes	Shewanella oneidensis MR-1		75	75
No Yes	Shewanella baltica OS155		130	130
No Yes	Shewanella woodyi ATCC 51908		20	20
No Yes	Shewanella sp. MR-7		26	26
No Yes	Shewanella amazonensis SB2B		13	13
No Yes	Shewanella violacea DSS12		18	18
No Yes	Shewanella frigidimarina NCIMB 400		37	37
No Yes	Shewanella putrefaciens CN-32		27	27
No Yes	Colwellia psychrerythraea 34H		22	22
No Yes	Pseudoalteromonas atlantica T6c		27	27
No Yes	Pseudoalteromonas haloplanktis TAC125		18	18
No Yes	Teredinibacter turnerae T7901		18	18
No Yes	Saccharophagus degradans 2-40		16	16
No Yes	Marinobacter aquaeolei VT8		48	48
No Yes	Alteromonas macleodii Deep ecotype		29	29
No Yes	Hahella chejuensis KCTC 2396		31	31
No Yes	Alcanivorax borkumensis SK2		15	15
No Yes	Marinomonas sp. MWYL1		31	31
No Yes	Chromohalobacter salexigens DSM 3043		13	13
No Yes	Methylococcus capsulatus Bath		22	22
No Yes	Dichelobacter nodosus VCS1703A		9	9
No Yes	Stenotrophomonas maltophilia R551-3		22	22
No Yes	Xylella fastidiosa 9a5c		13	13
No Yes	Xanthomonas axonopodis pv. citri 306		53	53
No Yes	Xanthomonas albilineans		37	37
No Yes	Xanthomonas oryzae pv. oryzae KACC10331		170	170
No Yes	Xanthomonas campestris pv. campestris ATCC 33913 (Completed 2001)		54	54
No Yes	Halothiobacillus neapolitanus c2		15	15
No Yes	Alkalilimnicola ehrlichii MLHE-1		22	22
No Yes	Thioalkalivibrio sp. HL-EbGR7		22	22
No Yes	Halorhodospira halophila SL1		21	21
No Yes	Allochromatium vinosum DSM 180		20	20
No Yes	Nitrosococcus halophilus Nc4		33	33
No Yes	Nitrosococcus oceani ATCC 19707		11	11
No Yes	Coxiella burnetii RSA 493		14	14
No Yes	Legionella longbeachae NSW150		19	19
No Yes	Legionella pneumophila ssp. pneumophila Philadelphia 1		26	26
No Yes	Kangiella koreensis DSM 16069		11	11
No Yes	Baumannia cicadellinicola Hc		5	5
No Yes	Candidatus Carsonella ruddii PV		1	1
No Yes	Candidatus Vesicomyosocius okutanii HA		7	7
No Yes	Candidatus Ruthia magnifica Cm		7	7
No Yes	Cronobacter turicensis z3032		15	15
No Yes	Cronobacter sakazakii ATCC BAA-894		14	14
No Yes	Candidatus Riesia pediculicola USDA		4	4
No Yes	Dickeya zeae Ech1591		33	33
No Yes	Dickeya dadantii Ech703		18	18
No Yes	Candidatus Hamiltonella defensa 5AT		22	22
No Yes	Candidatus Blochmannia floridanus		8	8
No Yes	Pectobacterium wasabiae WPP163		14	14
No Yes	Pectobacterium atrosepticum SCRI1043		17	17
No Yes	Pectobacterium carotovorum ssp. carotovorum PC1		13	13
No Yes	Sodalis glossinidius morsitans		13	13
No Yes	Pantoea ananatis LMG 20103		16	16
No Yes	Wigglesworthia glossinidia		6	6
No Yes	Buchnera aphidicola APS		5	5
No Yes	Photorhabdus asymbiotica		32	32
No Yes	Photorhabdus luminescens ssp. laumondii TTO1		52	52
No Yes	Edwardsiella ictaluri 93-146		24	24
No Yes	Edwardsiella tarda EIB202		28	28
No Yes	Yersinia pseudotuberculosis IP 32953		26	26
No Yes	Yersinia pestis CO92		64	64
No Yes	Yersinia enterocolitica ssp. enterocolitica 8081		45	45
No Yes	Xenorhabdus bovienii SS-2004		68	68
No Yes	Shigella sonnei Ss046		185	185
No Yes	Shigella flexneri 2a 2457T		148	148
No Yes	Shigella dysenteriae Sd197		141	141
No Yes	Shigella boydii Sb227		181	181
No Yes	Serratia proteamaculans 568		23	23
No Yes	Salmonella enterica ssp. enterica ser. Typhimurium LT2		16	16
No Yes	Proteus mirabilis HI4320		13	13
No Yes	Klebsiella variicola At-22		12	12
No Yes	Klebsiella pneumoniae ssp. pneumoniae MGH 78578		17	17
No Yes	Escherichia fergusonii ATCC 35469		19	19
No Yes	Escherichia coli K-12 subMG1655		32	32
No Yes	Erwinia tasmaniensis Et1/99		16	16
No Yes	Erwinia pyrifoliae Ep1/96		39	39
No Yes	Erwinia amylovora ATCC 49946		16	16
No Yes	Enterobacter sp. 638		21	21
No Yes	Citrobacter rodentium ICC168		41	41
No Yes	Citrobacter koseri ATCC BAA-895		13	13
No Yes	Azotobacter vinelandii DJ		46	46
No Yes	Pseudomonas entomophila L48		19	19
No Yes	Pseudomonas syringae pv. tomato DC3000		48	48
No Yes	Pseudomonas stutzeri A1501		34	34
No Yes	Pseudomonas putida KT2440		26	26
No Yes	Pseudomonas fluorescens Pf-5		14	14
No Yes	Pseudomonas mendocina ymp		17	17
No Yes	Pseudomonas aeruginosa PAO1		20	20
No Yes	Cellvibrio japonicus Ueda107		40	40
No Yes	Psychrobacter sp. PRwf-1		35	35
No Yes	Psychrobacter arcticus 273-4		26	25
No Yes	Psychrobacter cryohalolentis K5		24	23
No Yes	Acinetobacter sp. ADP1		17	16
No Yes	Acinetobacter baumannii ATCC 17978		17	16
No Yes	Thiomicrospira crunogena XCL-2		19	19
No Yes	Francisella philomiragia ssp. philomiragia ATCC 25017		55	55
No Yes	Francisella tularensis ssp. tularensis SCHU S4		10	10
No Yes	Gloeobacter violaceus PCC 7421		28	28
No Yes	Acaryochloris marina MBIC11017		106	106
No Yes	Prochlorococcus marinus MIT 9313		9	9
No Yes	Nostoc punctiforme PCC 73102		43	43
No Yes	Nostoc sp. PCC 7120		11	11
No Yes	Anabaena variabilis ATCC 29413		22	22
No Yes	Trichodesmium erythraeum IMS101		53	53
No Yes	Thermosynechococcus elongatus BP-1		27	27
No Yes	cyanobacterium UCYN-A		5	5
No Yes	Cyanothece sp. ATCC 51142		36	36
No Yes	Synechocystis sp. PCC 6803		31	31
No Yes	Synechococcus elongatus PCC 6301		10	10
No Yes	Microcystis aeruginosa NIES-843		99	99
No Yes	Nitrosopumilus maritimus SCM1		3	3
No Yes	Nanoarchaeum equitans Kin4-M		2	2
No Yes	Candidatus Korarchaeum cryptofilum OPF8		6	6
No Yes	Methanocella paludicola SANAE		16	16
No Yes	Methanosaeta thermophila PT		6	6
No Yes	Methanococcoides burtonii DSM 6242		4	4
No Yes	Methanosarcina acetivorans C2A		63	63
No Yes	Methanosarcina mazei Go1		22	22
No Yes	Methanosarcina barkeri Fusaro		24	24
No Yes	Methanohalophilus mahii DSM 5219		6	6
No Yes	Methanosphaerula palustris E1-9c		5	5
No Yes	Candidatus Methanoregula boonei 6A8		7	7
No Yes	Methanospirillum hungatei JF-1		20	20
No Yes	Methanocorpusculum labreanum Z		4	4
No Yes	Methanoculleus marisnigri JR1		5	5
No Yes	Methanopyrus kandleri AV19		3	3
No Yes	Ferroglobus placidus DSM 10642		6	6
No Yes	Archaeoglobus profundus DSM 5631		4	4
No Yes	Archaeoglobus fulgidus DSM 4304		13	13
No Yes	Thermococcus onnurineus NA1		3	3
No Yes	Thermococcus kodakarensis KOD1		2	2
No Yes	Thermococcus gammatolerans EJ3		2	2
No Yes	Thermococcus sibiricus MM 739		4	4
No Yes	Pyrococcus horikoshii OT3		2	2
No Yes	Pyrococcus abyssi GE5		2	2
No Yes	Pyrococcus furiosus DSM 3638		24	24
No Yes	Thermoplasma volcanium GSS1		8	8
No Yes	Thermoplasma acidophilum DSM 1728		3	3
No Yes	Picrophilus torridus DSM 9790		2	2
No Yes	Haloquadratum walsbyi DSM 16790		13	13
No Yes	Halomicrobium mukohataei DSM 12286		9	9
No Yes	Halorhabdus utahensis DSM 12940		5	5
No Yes	Haloterrigena turkmenica DSM 5511		7	7
No Yes	Natronomonas pharaonis DSM 2160		7	7
No Yes	Natrialba magadii ATCC 43099		10	10
No Yes	Halorubrum lacusprofundi ATCC 49239		12	12
No Yes	Haloferax volcanii DS2		13	13
No Yes	Halobacterium salinarum R1		10	10
No Yes	Halobacterium sp. NRC-1		11	11
No Yes	Haloarcula marismortui ATCC 43049		13	13
No Yes	Methanocaldococcus sp. FS406-22		3	3
No Yes	Methanocaldococcus fervens AG86		4	4
No Yes	Methanocaldococcus vulcanius M7		2	2
No Yes	Methanocaldococcus jannaschii DSM 2661		6	6
No Yes	Methanococcus aeolicus Nankai-3		3	3
No Yes	Methanococcus maripaludis S2		5	5
No Yes	Methanococcus vannielii SB		4	4
No Yes	Methanothermobacter thermautotrophicus Delta H		3	3
No Yes	Methanosphaera stadtmanae DSM 3091		4	4
No Yes	Methanobrevibacter ruminantium M1		5	5
No Yes	Methanobrevibacter smithii ATCC 35061		4	4
No Yes	uncultured methanogenic archaeon RC-I		24	24
No Yes	Aciduliprofundum boonei T469		4	4
No Yes	Hyperthermus butylicus DSM 5456		3	3
No Yes	Aeropyrum pernix K1		3	3
No Yes	Ignicoccus hospitalis KIN4/I		4	4
No Yes	Staphylothermus marinus F1		3	3
No Yes	Desulfurococcus kamchatkensis 1221n		3	3
No Yes	Metallosphaera sedula DSM 5348		4	4
No Yes	Sulfolobus tokodaii 7		6	6
No Yes	Sulfolobus islandicus Y.N.15.51		4	4
No Yes	Sulfolobus solfataricus P2		61	61
No Yes	Sulfolobus acidocaldarius DSM 639		4	4
No Yes	Thermofilum pendens Hrk 5		3	3
No Yes	Caldivirga maquilingensis IC-167		4	4
No Yes	Pyrobaculum calidifontis JCM 11548		4	4
No Yes	Pyrobaculum arsenaticum DSM 13514		5	5
No Yes	Pyrobaculum aerophilum IM2		4	4
No Yes	Pyrobaculum islandicum DSM 4184		4	4
No Yes	Thermoproteus neutrophilus V24Sta		4	4
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	52	52
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	105	99
No Yes	Cryptococcus neoformans var. grubii H99		19	19
No Yes	Cryptococcus neoformans B-3501A		37	37
No Yes	Ajellomyces dermatitidis ER-3		25	25
No Yes	Histoplasma capsulatum H143		23	23
No Yes	Histoplasma capsulatum H88		25	25
No Yes	Histoplasma capsulatum G186AR		24	24
No Yes	Paracoccidioides brasiliensis Pb01		39	39
No Yes	Paracoccidioides brasiliensis Pb03		21	21
No Yes	Coccidioides posadasii str. Silveira		24	24
No Yes	Coccidioides immitis RMSCC 3703		21	21
No Yes	Coccidioides immitis RMSCC 2394		24	24
No Yes	Coccidioides immitis H538.4		22	22
No Yes	Aspergillus fumigatus A1163		24	24
No Yes	Candida albicans WO-1		21	20
No Yes	Saccharomyces cerevisiae YJM789		48	48
No Yes	Saccharomyces cerevisiae RM11-1a		16	16
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	61	61
No Yes	Schizosaccharomyces pombe 972h-		30	30
No Yes	Batrachochytrium dendrobatidis JAM81		31	31
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	912	870
No Yes	Plasmodium falciparum HB3		14	14
No Yes	Plasmodium falciparum Dd2		9	9
No Yes	Candidatus Phytoplasma australiense		13	13
No Yes	Ureaplasma parvum ser. 3 ATCC 27815		6	6
No Yes	Mycoplasma agalactiae		20	20
No Yes	Mycoplasma hyopneumoniae 7448		11	11
No Yes	Mycoplasma hyopneumoniae J		13	13
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis JB197		36	36
No Yes	Leptospira interrogans ser. Copenhageni Fiocruz L1-130		15	15
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Ames)		15	15
No Yes	Treponema pallidum ssp. pallidum SS14		4	4
No Yes	Borrelia burgdorferi ZS7		3	3
No Yes	Bifidobacterium longum ssp. infantis ATCC 15697		32	32
No Yes	Bifidobacterium longum		36	36
No Yes	Bifidobacterium animalis ssp. lactis Bl-04		9	9
No Yes	Bifidobacterium animalis ssp. lactis DSM 10140		9	9
No Yes	Frankia sp. EAN1pec		98	98
No Yes	Propionibacterium acnes SK137		10	10
No Yes	Mycobacterium sp. KMS		36	36
No Yes	Mycobacterium sp. JLS		39	39
No Yes	Mycobacterium avium 104		38	38
No Yes	Mycobacterium tuberculosis KZN 1435		31	31
No Yes	Mycobacterium tuberculosis H37Ra		35	35
No Yes	Mycobacterium tuberculosis F11		35	35
No Yes	Mycobacterium tuberculosis CDC1551		19	19
No Yes	Mycobacterium bovis BCG Tokyo 172		18	18
No Yes	Mycobacterium bovis BCG Pasteur 1173P2		17	17
No Yes	Mycobacterium leprae Br4923		7	7
No Yes	Corynebacterium glutamicum R		20	20
No Yes	Corynebacterium glutamicum ATCC 13032 Bielefeld		26	26
No Yes	Tropheryma whipplei TW08/27		5	5
No Yes	Clavibacter michiganensis ssp. sepedonicus		106	106
No Yes	Dehalococcoides sp. GT		8	8
No Yes	Dehalococcoides sp. VS		11	11
No Yes	Dehalococcoides sp. BAV1		14	14
No Yes	Chlorobium phaeobacteroides BS1		25	25
No Yes	Porphyromonas gingivalis ATCC 33277		27	27
No Yes	Bacteroides fragilis YCH46		10	10
No Yes	Salinibacter ruber		24	24
No Yes	Candidatus Sulcia muelleri DMIN		2	2
No Yes	Candidiatus Sulcia muelleri SMDSEM		2	2
No Yes	Blattabacterium sp. BPLAN		4	4
No Yes	Chlamydophila pneumoniae J138		7	7
No Yes	Chlamydophila pneumoniae CWL029		7	7
No Yes	Chlamydophila pneumoniae AR39		7	7
No Yes	Chlamydia trachomatis B/TZ1A828/OT		7	7
No Yes	Chlamydia trachomatis B/Jali20/OT		7	7
No Yes	Chlamydia trachomatis L2b/UCH-1/proctitis		7	7
No Yes	Chlamydia trachomatis 434/Bu		7	7
No Yes	Chlamydia trachomatis A/HAR-13		7	7
No Yes	Thermus thermophilus HB8		15	15
No Yes	Desulfitobacterium hafniense DCB-2		36	36
No Yes	Clostridium kluyveri NBRC 12016		25	25
No Yes	Clostridium perfringens SM101		39	39
No Yes	Clostridium perfringens ATCC 13124		10	10
No Yes	Clostridium difficile R20291		17	17
No Yes	Clostridium difficile CD196		17	17
No Yes	Clostridium botulinum F Langeland		11	11
No Yes	Clostridium botulinum E3 Alaska E43		11	11
No Yes	Clostridium botulinum B1 Okra		12	12
No Yes	Clostridium botulinum Ba4 657		20	20
No Yes	Clostridium botulinum B Eklund 17B		13	13
No Yes	Clostridium botulinum A2 Kyoto		12	12
No Yes	Clostridium botulinum A3 Loch Maree		11	11
No Yes	Clostridium botulinum A Hall		12	12
No Yes	Clostridium botulinum A ATCC 19397		11	11
No Yes	Lactobacillus casei BL23		39	39
No Yes	Lactobacillus rhamnosus Lc 705		11	11
No Yes	Lactobacillus johnsonii FI9785		16	16
No Yes	Lactobacillus reuteri JCM 1112		21	21
No Yes	Lactobacillus plantarum JDM1		14	14
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC BAA-365		22	22
No Yes	Lactococcus lactis ssp. lactis KF147		14	14
No Yes	Lactococcus lactis ssp. cremoris MG1363		42	42
No Yes	Lactococcus lactis ssp. cremoris SK11		52	52
No Yes	Streptococcus equi ssp. equi 4047		61	61
No Yes	Streptococcus equi ssp. zooepidemicus		27	27
No Yes	Streptococcus pyogenes MGAS10750		18	18
No Yes	Streptococcus pyogenes MGAS10270		14	14
No Yes	Streptococcus pyogenes MGAS2096		18	18
No Yes	Streptococcus pyogenes MGAS9429		17	17
No Yes	Streptococcus pyogenes MGAS6180		13	13
No Yes	Streptococcus pyogenes NZ131		17	17
No Yes	Streptococcus pyogenes MGAS8232		24	24
No Yes	Streptococcus pyogenes MGAS10394		25	25
No Yes	Streptococcus pyogenes Manfredo		17	17
No Yes	Streptococcus pyogenes MGAS315		15	15
No Yes	Streptococcus pyogenes SSI-1		11	11
No Yes	Streptococcus pyogenes MGAS5005		16	16
No Yes	Streptococcus pneumoniae ATCC 700669		15	15
No Yes	Streptococcus pneumoniae CGSP14		26	26
No Yes	Streptococcus pneumoniae G54		22	22
No Yes	Streptococcus pneumoniae P1031		19	19
No Yes	Streptococcus pneumoniae JJA		17	17
No Yes	Streptococcus pneumoniae 70585		16	16
No Yes	Streptococcus pneumoniae Hungary19A-6		16	16
No Yes	Streptococcus pneumoniae Taiwan19F-14		29	29
No Yes	Streptococcus pneumoniae D39		12	12
No Yes	Streptococcus pneumoniae R6 (Non-virulent)		24	24
No Yes	Streptococcus agalactiae A909		19	19
No Yes	Streptococcus agalactiae 2603V/R		14	14
No Yes	Streptococcus mutans NN2025		12	12
No Yes	Streptococcus thermophilus LMD-9		20	20
No Yes	Streptococcus thermophilus CNRZ1066 (Younger strain)		35	35
No Yes	Streptococcus suis BM407		17	17
No Yes	Streptococcus suis SC84		17	17
No Yes	Streptococcus suis 98HAH33		17	17
No Yes	Streptococcus suis P1/7		16	16
No Yes	Listeria monocytogenes 08-5578		10	10
No Yes	Listeria monocytogenes 08-5923		10	10
No Yes	Listeria monocytogenes Clip80459		7	7
No Yes	Listeria monocytogenes HCC23		7	7
No Yes	Listeria monocytogenes 4b F2365		7	7
No Yes	Geobacillus sp. Y412MC61		33	33
No Yes	Geobacillus sp. Y412MC10		12	12
No Yes	Bacillus licheniformis ATCC 14580		19	19
No Yes	Bacillus cytotoxicus NVH 391-98		24	24
No Yes	Bacillus thuringiensis Al Hakam		15	15
No Yes	Bacillus cereus 03BB102		16	16
No Yes	Bacillus cereus AH820		18	18
No Yes	Bacillus cereus AH187		28	28
No Yes	Bacillus cereus B4264		21	21
No Yes	Bacillus cereus G9842		21	21
No Yes	Bacillus cereus Q1		21	21
No Yes	Bacillus cereus E33L		14	14
No Yes	Bacillus cereus ATCC 10987		21	21
No Yes	Bacillus anthracis A0248		11	11
No Yes	Bacillus anthracis CDC 684		11	11
No Yes	Bacillus anthracis Sterne		12	12
No Yes	Bacillus anthracis Ames		11	11
No Yes	Bacillus megaterium DSM319		12	12
No Yes	Staphylococcus epidermidis ATCC 12228		13	13
No Yes	Staphylococcus aureus RF122		10	10
No Yes	Staphylococcus aureus ssp. aureus ED98		12	12
No Yes	Staphylococcus aureus ssp. aureus Newman		11	11
No Yes	Staphylococcus aureus ssp. aureus Mu3		12	12
No Yes	Staphylococcus aureus ssp. aureus USA300_TCH1516		15	15
No Yes	Staphylococcus aureus ssp. aureus USA300_FPR3757		13	13
No Yes	Staphylococcus aureus ssp. aureus JH1		11	11
No Yes	Staphylococcus aureus ssp. aureus JH9		12	12
No Yes	Staphylococcus aureus ssp. aureus MSSA476		9	9
No Yes	Staphylococcus aureus ssp. aureus MRSA252		27	27
No Yes	Staphylococcus aureus ssp. aureus MW2		11	11
No Yes	Staphylococcus aureus ssp. aureus N315		12	12
No Yes	Staphylococcus aureus ssp. aureus Mu50		12	12
No Yes	Staphylococcus aureus ssp. aureus COL		11	11
No Yes	Campylobacter jejuni RM1221		8	8
No Yes	Campylobacter jejuni ssp. jejuni 81116		7	7
No Yes	Campylobacter jejuni ssp. jejuni 81-176		7	7
No Yes	Campylobacter jejuni ssp. doylei 269.97		6	6
No Yes	Helicobacter pylori B38		7	7
No Yes	Helicobacter pylori P12		7	7
No Yes	Helicobacter pylori G27		7	7
No Yes	Helicobacter pylori Shi470		8	8
No Yes	Helicobacter pylori HPAG1		8	8
No Yes	Helicobacter pylori J99		7	7
No Yes	Desulfovibrio vulgaris DP4		11	11
No Yes	Desulfovibrio vulgaris Miyazaki F		10	10
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans ATCC 27774		13	13
No Yes	Geobacter sp. M21		21	21
No Yes	Anaeromyxobacter sp. K		18	18
No Yes	Anaeromyxobacter dehalogenans 2CP-1		17	17
No Yes	Azoarcus sp. BH72		13	13
No Yes	Neisseria meningitidis alpha14		9	9
No Yes	Neisseria meningitidis 053442		20	20
No Yes	Neisseria meningitidis FAM18		21	21
No Yes	Neisseria meningitidis MC58		24	24
No Yes	Neisseria gonorrhoeae NCCP11945		14	14
No Yes	Ralstonia eutropha H16		16	16
No Yes	Ralstonia pickettii 12D		20	20
No Yes	Polynucleobacter necessarius ssp. necessarius STIR1		7	7
No Yes	Burkholderia sp. CCGE1002		23	23
No Yes	Burkholderia pseudomallei MSHR346		14	14
No Yes	Burkholderia pseudomallei 1106a		27	27
No Yes	Burkholderia pseudomallei 668		25	25
No Yes	Burkholderia pseudomallei 1710b		30	30
No Yes	Burkholderia mallei NCTC 10229		100	100
No Yes	Burkholderia mallei NCTC 10247		99	99
No Yes	Burkholderia mallei SAVP1		92	92
No Yes	Burkholderia ambifaria MC40-6		20	20
No Yes	Burkholderia cenocepacia MC0-3		42	42
No Yes	Burkholderia cenocepacia HI2424		28	28
No Yes	Burkholderia cenocepacia J2315		39	39
No Yes	Burkholderia multivorans ATCC 17616		45	45
No Yes	Caulobacter crescentus NA1000		17	17
No Yes	Zymomonas mobilis ssp. mobilis NCIMB 11163		10	10
No Yes	Rhodobacter sphaeroides KD131		24	24
No Yes	Rhodobacter sphaeroides ATCC 17025		45	44
No Yes	Rhodobacter sphaeroides ATCC 17029		19	19
No Yes	Gluconacetobacter diazotrophicus PAl 5		62	62
No Yes	Ehrlichia ruminantium Gardel		9	9
No Yes	Ehrlichia ruminantium Welgevonden		9	9
No Yes	Anaplasma marginale Florida		9	9
No Yes	Orientia tsutsugamushi Ikeda		7	7
No Yes	Rickettsia bellii OSU 85-389		6	6
No Yes	Rickettsia rickettsii Iowa		7	7
No Yes	Methylobacterium extorquens DM4		30	30
No Yes	Methylobacterium extorquens AM1		11	11
No Yes	Brucella suis ATCC 23445		20	20
No Yes	Brucella melitensis ATCC 23457		19	19
No Yes	Brucella abortus S19		19	19
No Yes	Brucella melitensis biov. Abortus 2308		19	19
No Yes	Rhizobium etli CIAT 652		9	9
No Yes	Rhizobium leguminosarum bv. trifolii WSM2304		16	16
No Yes	Rhizobium leguminosarum bv. trifolii WSM1325		23	23
No Yes	Rhodopseudomonas palustris TIE-1		18	18
No Yes	Rhodopseudomonas palustris HaA2		9	9
No Yes	Rhodopseudomonas palustris BisB5		13	13
No Yes	Rhodopseudomonas palustris BisB18		12	12
No Yes	Rhodopseudomonas palustris BisA53		15	15
No Yes	Bradyrhizobium sp. BTAi1		26	26
No Yes	Acidithiobacillus ferrooxidans ATCC 53993		28	28
No Yes	Haemophilus somnus 2336		15	15
No Yes	Haemophilus influenzae PittGG		10	10
No Yes	Haemophilus influenzae PittEE		14	14
No Yes	Haemophilus influenzae 86-028NP		11	11
No Yes	Actinobacillus pleuropneumoniae ser. 3 JL03		22	22
No Yes	Actinobacillus pleuropneumoniae ser. 7 AP76		31	31
No Yes	Vibrio fischeri MJ11		17	17
No Yes	Vibrio vulnificus CMCP6 (Poor annotation)		37	37
No Yes	Vibrio cholerae M66-2		21	21
No Yes	Vibrio cholerae O395		24	24
No Yes	Vibrio cholerae MJ-1236		22	22
No Yes	Shewanella sp. W3-18-1		49	49
No Yes	Shewanella sp. ANA-3		35	35
No Yes	Shewanella baltica OS223		36	36
No Yes	Shewanella baltica OS185		31	31
No Yes	Shewanella baltica OS195		42	42
No Yes	Shewanella sp. MR-4		24	24
No Yes	Stenotrophomonas maltophilia K279a		34	34
No Yes	Xylella fastidiosa M23		12	12
No Yes	Xylella fastidiosa M12		11	11
No Yes	Xylella fastidiosa Temecula1		13	13
No Yes	Xanthomonas campestris pv. vesicatoria 85-10 (Completed 2005)		65	65
No Yes	Xanthomonas oryzae pv. oryzae PXO99A		212	210
No Yes	Xanthomonas oryzae pv. oryzae MAFF 311018		184	184
No Yes	Xanthomonas campestris pv. campestris B100		53	53
No Yes	Xanthomonas campestris pv. campestris 8004 (Completed 2005)		43	43
No Yes	Thioalkalivibrio sp. K90mix		21	21
No Yes	Coxiella burnetii CbuK_Q154		14	14
No Yes	Coxiella burnetii CbuG_Q212		10	10
No Yes	Coxiella burnetii Dugway 5J108-111		15	15
No Yes	Coxiella burnetii RSA 331		8	8
No Yes	Legionella pneumophila Corby		15	15
No Yes	Legionella pneumophila Paris		22	22
No Yes	Legionella pneumophila Lens		31	31
No Yes	Dickeya dadantii Ech586		15	15
No Yes	Candidatus Blochmannia pennsylvanicus BPEN		8	8
No Yes	Buchnera aphidicola Cc		5	5
No Yes	Buchnera aphidicola Bp		6	6
No Yes	Buchnera aphidicola Tuc7		4	4
No Yes	Buchnera aphidicola 5A		4	4
No Yes	Buchnera aphidicola Sg		6	6
No Yes	Yersinia pseudotuberculosis PB1/+		28	28
No Yes	Yersinia pseudotuberculosis YPIII		17	17
No Yes	Yersinia pseudotuberculosis IP 31758		14	14
No Yes	Yersinia pestis Z176003		50	50
No Yes	Yersinia pestis Pestoides F		47	47
No Yes	Yersinia pestis Nepal516		52	52
No Yes	Yersinia pestis Antiqua		93	93
No Yes	Yersinia pestis Angola		66	66
No Yes	Yersinia pestis biov. Microtus 91001		52	52
No Yes	Yersinia pestis KIM		59	59
No Yes	Shigella flexneri 5 8401		151	151
No Yes	Shigella flexneri 2a 301		174	174
No Yes	Shigella boydii CDC 3083-94		104	104
No Yes	Salmonella enterica ssp. arizonae ser. 62:z4,z23:--		33	33
No Yes	Salmonella enterica ssp. enterica ser. Schwarzengrund CVM19633		15	15
No Yes	Salmonella enterica ssp. enterica ser. Enteritidis P125109		16	16
No Yes	Salmonella enterica ssp. enterica ser. Choleraesuis str. SC-B67		38	38
No Yes	Salmonella enterica ssp. enterica ser. Newport SL254		13	13
No Yes	Salmonella enterica ssp. enterica ser. Dublin CT_02021853		14	14
No Yes	Salmonella enterica ssp. enterica ser. Typhi CT18		15	15
No Yes	Salmonella enterica ssp. enterica ser. Typhi Ty2		14	14
No Yes	Salmonella enterica ssp. enterica ser. Agona SL483		29	29
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi C RKS4594		29	29
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi B SPB7		17	17
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A AKU_12601		16	16
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A ATCC 9150		15	15
No Yes	Salmonella enterica ssp. enterica ser. Heidelberg SL476		21	21
No Yes	Salmonella enterica ssp. enterica ser. Gallinarum 287/91		15	15
No Yes	Klebsiella pneumoniae 342		13	13
No Yes	Klebsiella pneumoniae NTUH-K2044		21	21
No Yes	Escherichia coli ED1a		24	24
No Yes	Escherichia coli IAI39		105	105
No Yes	Escherichia coli UMN026		34	34
No Yes	Escherichia coli 55989		36	36
No Yes	Escherichia coli S88		24	24
No Yes	Escherichia coli IAI1		19	19
No Yes	Escherichia coli BL21		31	31
No Yes	Escherichia coli ATCC 8739		31	31
No Yes	Escherichia coli BL21(DE3)		35	35
No Yes	Escherichia coli SMS-3-5		37	37
No Yes	Escherichia coli SE11		18	18
No Yes	Escherichia coli APEC O1		26	26
No Yes	Escherichia coli O103:H2 12009		44	44
No Yes	Escherichia coli UTI89		25	25
No Yes	Escherichia coli 536		50	50
No Yes	Escherichia coli HS		28	28
No Yes	Escherichia coli E24377A		27	27
No Yes	Escherichia coli O55:H7 CB9615		24	24
No Yes	Escherichia coli O26:H11 11368		27	27
No Yes	Escherichia coli CFT073		45	45
No Yes	Escherichia coli O111:H- 11128		57	57
No Yes	Escherichia coli O127:H6 E2348/69		51	51
No Yes	Escherichia coli O157:H7 EDL933		45	45
No Yes	Escherichia coli O157:H7 TW14359		45	45
No Yes	Escherichia coli O157:H7 EC4115		43	43
No Yes	Escherichia coli O157:H7 Sakai		40	40
No Yes	Escherichia coli BW2952		35	35
No Yes	Escherichia coli K-12 subW3110		37	37
No Yes	Escherichia coli K-12 subDH10B		33	33
No Yes	Escherichia coli B REL606		33	33
No Yes	Erwinia amylovora CFBP1430		16	16
No Yes	Pseudomonas syringae pv. phaseolicola 1448A		22	22
No Yes	Pseudomonas syringae pv. syringae B728a		28	28
No Yes	Pseudomonas putida W619		18	18
No Yes	Pseudomonas putida F1		17	17
No Yes	Pseudomonas putida GB-1		20	20
No Yes	Pseudomonas fluorescens SBW25		21	21
No Yes	Pseudomonas fluorescens Pf0-1		21	21
No Yes	Pseudomonas aeruginosa LESB58		18	18
No Yes	Pseudomonas aeruginosa PA7		35	35
No Yes	Pseudomonas aeruginosa UCBPP-PA14		22	22
No Yes	Acinetobacter baumannii AB307-0294		12	11
No Yes	Acinetobacter baumannii AYE		62	61
No Yes	Acinetobacter baumannii SDF		152	151
No Yes	Acinetobacter baumannii AB0057		28	27
No Yes	Acinetobacter baumannii ACICU		24	23
No Yes	Francisella novicida U112		10	10
No Yes	Francisella tularensis ssp. mediasiatica FSC147		10	10
No Yes	Francisella tularensis ssp. holarctica FTNF002-00		60	60
No Yes	Francisella tularensis ssp. holarctica OSU18		47	47
No Yes	Francisella tularensis ssp. holarctica		60	60
No Yes	Francisella tularensis ssp. tularensis WY96-3418		58	58
No Yes	Francisella tularensis ssp. tularensis FSC198		10	10
No Yes	Prochlorococcus marinus NATL1A		9	9
No Yes	Prochlorococcus marinus MIT 9301		9	9
No Yes	Prochlorococcus marinus MIT 9515		9	9
No Yes	Prochlorococcus marinus AS9601		9	9
No Yes	Prochlorococcus marinus ssp. marinus CCMP1375		9	9
No Yes	Prochlorococcus marinus ssp. pastoris CCMP1986		9	9
No Yes	Prochlorococcus marinus MIT 9215		9	9
No Yes	Prochlorococcus marinus MIT 9211		9	9
No Yes	Prochlorococcus marinus MIT 9312		9	9
No Yes	Prochlorococcus marinus MIT 9303		9	9
No Yes	Prochlorococcus marinus NATL2A		9	9
No Yes	Cyanothece sp. PCC 8802		14	14
No Yes	Cyanothece sp. PCC 7425		11	11
No Yes	Cyanothece sp. PCC 7424		20	20
No Yes	Cyanothece sp. PCC 8801		25	25
No Yes	Synechococcus sp. JA-2-3Ba(2-13) (Poor annotation)		10	10
No Yes	Synechococcus sp. JA-3-3Ab (Poor annotation)		20	20
No Yes	Synechococcus sp. CC9902 (Poor annotation)		9	9
No Yes	Synechococcus sp. RCC307		9	9
No Yes	Synechococcus sp. CC9605 (Poor annotation)		9	9
No Yes	Synechococcus sp. WH 8102 (Good annotation)		9	9
No Yes	Synechococcus sp. CC9311		9	9
No Yes	Synechococcus sp. WH 7803		9	9
No Yes	Synechococcus sp. PCC 7002		12	12
No Yes	Synechococcus elongatus PCC 7942		10	10
No Yes	Methanococcus maripaludis C6		5	5
No Yes	Methanococcus maripaludis C7		5	5
No Yes	Methanococcus maripaludis C5		5	5
No Yes	Sulfolobus islandicus Y.G.57.14		4	4
No Yes	Sulfolobus islandicus L.S.2.15		5	5
No Yes	Sulfolobus islandicus M.16.27		16	16
No Yes	Sulfolobus islandicus M.14.25		14	14
No Yes	Sulfolobus islandicus M.16.4		10	10
No Yes	Sulfolobus islandicus L.D.8.5		4	4
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	53	52
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		82	82
No Yes	Lotus japonicus (Early assembly)		250	250
No Yes	Prunus persica (Early draft)	Peach	429	427
No Yes	Manihot esculenta (Early draft)	Cassava	462	462
No Yes	Ricinus communis (Early assembly)	Castor bean	145	145
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	218	217
No Yes	Phoenix dactylifera (Early draft)	Date palm	94	93
No Yes	Trypanosoma vivax (Parial)		74	74
No Yes	Trypanosoma congolense (Partial)		66	63
No Yes	Toxoplasma gondii GT1 (Early assembly)		18	18
No Yes	Toxoplasma gondii VEG (Early assembly)		18	18
No Yes	Toxoplasma gondii RH (Archived)		19	19
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	63	62
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	56	55
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	41	40
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	55	55
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	55	54
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	47	45
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	40	39
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	40	40
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	33	32
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	53	53
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	49	49
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	41	41
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	39	39
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	52	51
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	32	32
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	37	37
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	37	37
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	34	34
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	55	53
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	29	29
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	46	45
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	53	52
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	43	42
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	54	52
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	38	37
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	47	46
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	34	34
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	33	33
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	45	44
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	37	37
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	33	33
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	37	35
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	41	41
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	48	47
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	34	34
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	51	51
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	55	52
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	38	38
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	36	36
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	91	90
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	71	71
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	68	68
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	59	59
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	59	59
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	62	58
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		44	44
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		82	82
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	27	27
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	52	52
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	31	31
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	33	33
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	28	28
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	86	80
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	87	81
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	131	131
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	200	197
No Yes	NCBI viral sequences (Viral)		664	625
No Yes	PDB chains (SCOP 1.73) (PDB)		158	158
No Yes	TargetDB (Targets)		1090	1084
No Yes	UniProt 15.0 (UniProt)		51707	48285
No Yes	UniProt 15.0 viral sequences (Viral)		10872	8401