S-adenosyl-L-methionine-dependent methyltransferases superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		173799	173799
No Yes	Homo sapiens 49_36k (all transcripts)	Human	260	250
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	190	183
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	100	95
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	131	129
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	215	210
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	210	204
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	100	95
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	98	95
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	85	78
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	160	157
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	212	210
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	90	87
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	100	96
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	118	115
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	89	85
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	107	105
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	89	88
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	87	86
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	159	156
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	80	79
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	119	116
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	161	157
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	83	82
No Yes	Equus caballus 49_2 (all transcripts)	Horse	126	123
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	98	96
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	108	105
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	87	86
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	89	86
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	103	101
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	92	89
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	111	107
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	78	77
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	102	99
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	166	162
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	142	135
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	124	121
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	116	114
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	105	102
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	128	123
No Yes	Xenopus laevis	African clawed frog	241	232
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	169	163
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	160	154
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	202	195
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	148	144
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	134	129
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	227	223
No Yes	Branchiostoma floridae 1.0	Florida lancelet	446	424
No Yes	Ciona savignyi 49_2f (all transcripts)		114	109
No Yes	Ciona intestinalis 49_2i (all transcripts)		159	154
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	296	288
No Yes	Helobdella robusta		121	117
No Yes	Capitella sp. I		200	194
No Yes	Bombyx mori	Domestic silkworm	69	65
No Yes	Nasonia vitripennis	Jewel wasp	87	85
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	179	171
No Yes	Drosophila grimshawi 1.3		79	77
No Yes	Drosophila willistoni 1.3		83	81
No Yes	Drosophila pseudoobscura 2.3		83	81
No Yes	Drosophila persimilis 1.3		83	81
No Yes	Drosophila yakuba 1.3		85	82
No Yes	Drosophila simulans 1.3		73	71
No Yes	Drosophila sechellia 1.3		84	81
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	99	96
No Yes	Drosophila erecta 1.3		80	77
No Yes	Drosophila ananassae 1.3		85	83
No Yes	Drosophila virilis 1.2		78	76
No Yes	Drosophila mojavensis 1.3		81	79
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	92	90
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	85	81
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	78	76
No Yes	Tribolium castaneum 3.0	Red flour beetle	77	75
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	77	76
No Yes	Acyrthosiphon pisum	Pea aphid	86	83
No Yes	Daphnia pulex	Common water flea	114	111
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	165	163
No Yes	Lottia gigantea		138	133
No Yes	Pristionchus pacificus		106	106
No Yes	Meloidogyne incognita	Southern root-knot nematode	81	81
No Yes	Meloidogyne hapla		59	58
No Yes	Brugia malayi	Agent of lymphatic filariasis	51	47
No Yes	Caenorhabditis japonica		88	87
No Yes	Caenorhabditis brenneri		86	83
No Yes	Caenorhabditis remanei		106	103
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	160	144
No Yes	Caenorhabditis briggsae 2		99	94
No Yes	Schistosoma mansoni		72	71
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	171	168
No Yes	Hydra magnipapillata		109	104
No Yes	Trichoplax adhaerens		105	102
No Yes	Proterospongia sp. ATCC 50818		113	110
No Yes	Monosiga brevicollis		99	98
No Yes	Capsaspora owczarzaki ATCC 30864		90	90
No Yes	Malassezia globosa CBS 7966		52	52
No Yes	Ustilago maydis		79	78
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		75	75
No Yes	Melampsora laricis-populina		76	76
No Yes	Sporobolomyces roseus IAM 13481		67	65
No Yes	Serpula lacrymans var. lacrymans S7.9		110	108
No Yes	Coprinopsis cinerea okayama7 130		96	95
No Yes	Pleurotus ostreatus	Oyster mushroom	109	108
No Yes	Laccaria bicolor S238N-H82		111	110
No Yes	Agaricus bisporus var. bisporus		115	114
No Yes	Schizophyllum commune		120	120
No Yes	Heterobasidion annosum		103	102
No Yes	Phanerochaete chrysosporium RP-78 2.1		100	100
No Yes	Postia placenta		179	175
No Yes	Tremella mesenterica		80	80
No Yes	Cryptococcus neoformans JEC21		64	64
No Yes	Magnaporthe grisea 70-15		156	155
No Yes	Podospora anserina		138	135
No Yes	Sporotrichum thermophile ATCC 42464		107	107
No Yes	Thielavia terrestris NRRL 8126		120	120
No Yes	Chaetomium globosum CBS 148.51		135	135
No Yes	Neurospora tetrasperma		120	118
No Yes	Neurospora discreta FGSC 8579		116	113
No Yes	Neurospora crassa OR74A		119	115
No Yes	Cryphonectria parasitica	Chestnut blight fungus	161	160
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		239	239
No Yes	Nectria haematococca mpVI		218	218
No Yes	Fusarium verticillioides 7600		189	189
No Yes	Fusarium graminearum		174	173
No Yes	Trichoderma atroviride		136	135
No Yes	Trichoderma reesei 1.2		124	122
No Yes	Trichoderma virens Gv29-8		170	165
No Yes	Verticillium dahliae VdLs.17		116	116
No Yes	Verticillium albo-atrum VaMs.102		103	102
No Yes	Botrytis cinerea B05.10		151	148
No Yes	Sclerotinia sclerotiorum		129	126
No Yes	Alternaria brassicicola		112	109
No Yes	Pyrenophora tritici-repentis		129	127
No Yes	Cochliobolus heterostrophus		123	122
No Yes	Stagonospora nodorum		151	149
No Yes	Mycosphaerella fijiensis CIRAD86		118	116
No Yes	Mycosphaerella graminicola IPO323		117	116
No Yes	Ajellomyces dermatitidis SLH14081		98	96
No Yes	Histoplasma capsulatum class NAmI strain WU24		89	88
No Yes	Microsporum gypseum		131	127
No Yes	Arthroderma benhamiae CBS 112371		124	121
No Yes	Microsporum canis CBS 113480		139	134
No Yes	Trichophyton equinum CBS 127.97		118	117
No Yes	Trichophyton verrucosum HKI 0517		123	119
No Yes	Trichophyton tonsurans CBS 112818		120	119
No Yes	Trichophyton rubrum CBS 118892		123	121
No Yes	Paracoccidioides brasiliensis Pb18		95	94
No Yes	Coccidioides posadasii RMSCC 3488		108	108
No Yes	Coccidioides immitis RS		109	109
No Yes	Uncinocarpus reesii 1704		102	99
No Yes	Aspergillus fumigatus Af293		120	118
No Yes	Neosartorya fischeri NRRL 181		138	137
No Yes	Penicillium chrysogenum Wisconsin 54-1255		127	127
No Yes	Penicillium marneffei ATCC 18224		133	132
No Yes	Aspergillus carbonarius ITEM 5010		154	153
No Yes	Aspergillus terreus NIH2624		154	152
No Yes	Aspergillus oryzae RIB40		175	173
No Yes	Aspergillus niger ATCC 1015		148	147
No Yes	Aspergillus flavus NRRL3357		190	185
No Yes	Aspergillus clavatus NRRL 1		128	126
No Yes	Aspergillus nidulans FGSC A4		136	136
No Yes	Tuber melanosporum Vittad	Perigord truffle	105	102
No Yes	Candida dubliniensis CD36		58	57
No Yes	Candida tropicalis MYA-3404		62	62
No Yes	Candida parapsilosis		60	60
No Yes	Candida albicans SC5314		60	59
No Yes	Yarrowia lipolytica CLIB122		63	63
No Yes	Candida lusitaniae ATCC 42720		63	63
No Yes	Vanderwaltozyma polyspora DSM 70294		43	43
No Yes	Candida glabrata CBS138		50	49
No Yes	Kluyveromyces thermotolerans CBS 6340		51	51
No Yes	Lachancea kluyveri		51	51
No Yes	Kluyveromyces waltii		48	48
No Yes	Lodderomyces elongisporus NRRL YB-4239		60	59
No Yes	Ashbya gossypii ATCC 10895		52	51
No Yes	Debaromyces hansenii		62	62
No Yes	Zygosaccharomyces rouxii		51	50
No Yes	Saccharomyces mikatae MIT		51	51
No Yes	Saccharomyces paradoxus MIT		50	50
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	50	50
No Yes	Saccharomyces bayanus MIT		51	51
No Yes	Candida guilliermondii ATCC 6260		135	135
No Yes	Pichia stipitis CBS 6054		60	59
No Yes	Pichia pastoris GS115		57	56
No Yes	Kluyveromyces lactis		49	49
No Yes	Schizosaccharomyces octosporus yFS286		62	62
No Yes	Schizosaccharomyces japonicus yFS275		57	57
No Yes	Schizosaccharomyces pombe	Fission yeast	66	66
No Yes	Allomyces macrogynus ATCC 38327		158	157
No Yes	Rhizopus oryzae RA 99-880		147	146
No Yes	Phycomyces blakesleeanus		133	132
No Yes	Mucor circinelloides		130	128
No Yes	Encephalitozoon intestinalis		16	16
No Yes	Encephalitozoon cuniculi		16	16
No Yes	Spizellomyces punctatus DAOM BR117		110	107
No Yes	Batrachochytrium dendrobatidis JEL423		72	72
No Yes	Dictyostelium discoideum		155	154
No Yes	Dictyostelium purpureum		170	169
No Yes	Entamoeba dispar		50	48
No Yes	Entamoeba invadens		44	43
No Yes	Entamoeba histolytica 1		53	52
No Yes	Arabidopsis lyrata	Lyrate rockcress	279	254
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	369	339
No Yes	Carica papaya	Papaya	217	207
No Yes	Medicago truncatula	Barrel medic	207	187
No Yes	Glycine max	Soybean	488	448
No Yes	Cucumis sativus	Cucumber	378	343
No Yes	Populus trichocarpa 1.1	Black cottonwood	390	366
No Yes	Vitis vinifera	Wine grape	309	293
No Yes	Brachypodium distachyon		320	294
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	428	397
No Yes	Zea mays subsp. mays	Maize	505	475
No Yes	Sorghum bicolor	Sorghum	300	275
No Yes	Selaginella moellendorffii		420	392
No Yes	Physcomitrella patens subsp. patens		239	221
No Yes	Coccomyxa sp. C-169		153	144
No Yes	Chlorella sp. NC64A		144	140
No Yes	Chlorella vulgaris		150	145
No Yes	Volvox carteri f. nagariensis		180	171
No Yes	Chlamydomonas reinhardtii 4.0		170	166
No Yes	Ostreococcus sp. RCC809		157	154
No Yes	Ostreococcus lucimarinus CCE9901		166	165
No Yes	Ostreococcus tauri		153	149
No Yes	Micromonas sp. RCC299		201	199
No Yes	Micromonas pusilla CCMP1545		192	186
No Yes	Cyanidioschyzon merolae		77	77
No Yes	Giardia lamblia		29	29
No Yes	Trypanosoma cruzi strain CL Brener		181	180
No Yes	Trypanosoma brucei		90	89
No Yes	Leishmania mexicana		92	92
No Yes	Leishmania major strain Friedlin		85	85
No Yes	Leishmania infantum JPCM5		92	91
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		90	88
No Yes	Aureococcus anophagefferens		261	247
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	147	144
No Yes	Phytophthora sojae 1.1		145	139
No Yes	Phytophthora infestans T30-4		164	160
No Yes	Phytophthora capsici		158	153
No Yes	Phaeodactylum tricornutum		199	195
No Yes	Fragilariopsis cylindrus		360	353
No Yes	Thalassiosira pseudonana		202	190
No Yes	Paramecium tetraurelia		129	126
No Yes	Tetrahymena thermophila SB210 1		92	89
No Yes	Babesia bovis T2Bo		39	39
No Yes	Theileria parva		42	42
No Yes	Theileria annulata		45	43
No Yes	Plasmodium falciparum 3D7		54	52
No Yes	Plasmodium vivax SaI-1		51	50
No Yes	Plasmodium knowlesi strain H		54	53
No Yes	Plasmodium yoelii ssp. yoelii 1		54	54
No Yes	Plasmodium chabaudi		64	64
No Yes	Plasmodium berghei ANKA		60	59
No Yes	Cryptosporidium hominis		38	36
No Yes	Cryptosporidium muris		39	38
No Yes	Cryptosporidium parvum Iowa II		39	38
No Yes	Neospora caninum Nc-Liverpool		84	77
No Yes	Neospora caninum		76	70
No Yes	Toxoplasma gondii ME49		77	72
No Yes	Naegleria gruberi		116	112
No Yes	Trichomonas vaginalis		564	564
No Yes	Guillardia theta		3	3
No Yes	Emiliania huxleyi CCMP1516		642	623
No Yes	Candidatus Phytoplasma mali		8	8
No Yes	Aster yellows witches-broom phytoplasma AYWB		11	11
No Yes	Onion yellows phytoplasma OY-M		15	15
No Yes	Acholeplasma laidlawii PG-8A		24	24
No Yes	Mesoplasma florum L1		13	13
No Yes	Ureaplasma parvum ser. 3 ATCC 700970		13	13
No Yes	Ureaplasma urealyticum ser. 10 ATCC 33699		11	11
No Yes	Mycoplasma mycoides ssp. mycoides SC PG1		17	15
No Yes	Mycoplasma capricolum ssp. capricolum ATCC 27343		15	15
No Yes	Mycoplasma crocodyli MP145		18	18
No Yes	Mycoplasma conjunctivae		15	15
No Yes	Mycoplasma penetrans HF-2		16	16
No Yes	Mycoplasma mobile 163K		15	15
No Yes	Mycoplasma arthritidis 158L3-1		12	12
No Yes	Mycoplasma agalactiae PG2		15	15
No Yes	Mycoplasma synoviae 53		11	11
No Yes	Mycoplasma pulmonis UAB CTIP		18	18
No Yes	Mycoplasma pneumoniae M129		9	9
No Yes	Mycoplasma hyopneumoniae 232		15	15
No Yes	Mycoplasma hominis		12	12
No Yes	Mycoplasma genitalium G37		6	6
No Yes	Mycoplasma gallisepticum R		9	9
No Yes	Aminobacterium colombiense DSM 12261		23	23
No Yes	Thermanaerovibrio acidaminovorans DSM 6589		24	23
No Yes	Brachyspira hyodysenteriae WA1		44	42
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis L550		49	49
No Yes	Leptospira interrogans ser. Lai 56601		55	55
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Paris)		47	46
No Yes	Treponema pallidum ssp. pallidum Nichols		11	11
No Yes	Treponema denticola ATCC 35405		35	33
No Yes	Borrelia garinii PBi		10	10
No Yes	Borrelia afzelii PKo		10	10
No Yes	Borrelia burgdorferi B31		10	10
No Yes	Borrelia recurrentis A1		11	11
No Yes	Borrelia duttonii Ly		10	10
No Yes	Borrelia turicatae 91E135		12	12
No Yes	Borrelia hermsii DAH		11	11
No Yes	Rhodopirellula baltica SH 1		58	58
No Yes	Pirellula staleyi DSM 6068		55	53
No Yes	Gardnerella vaginalis 409-05		14	14
No Yes	Bifidobacterium longum NCC2705		17	17
No Yes	Bifidobacterium animalis ssp. lactis AD011		16	16
No Yes	Bifidobacterium dentium Bd1		15	14
No Yes	Bifidobacterium adolescentis ATCC 15703		15	15
No Yes	Kineococcus radiotolerans SRS30216		45	44
No Yes	Catenulispora acidiphila DSM 44928		111	111
No Yes	Stackebrandtia nassauensis DSM 44728		100	99
No Yes	Acidothermus cellulolyticus 11B		19	18
No Yes	Nakamurella multipartita DSM 44233		52	52
No Yes	Geodermatophilus obscurus DSM 43160		61	61
No Yes	Frankia sp. CcI3		92	92
No Yes	Frankia alni ACN14a		131	131
No Yes	Thermobifida fusca YX		52	52
No Yes	Thermomonospora curvata DSM 43183		95	95
No Yes	Streptosporangium roseum DSM 43021		115	113
No Yes	Streptomyces griseus ssp. griseus NBRC 13350		120	118
No Yes	Streptomyces avermitilis MA-4680		99	98
No Yes	Streptomyces scabiei 87.22		134	133
No Yes	Streptomyces coelicolor A3(2)		111	111
No Yes	Actinosynnema mirum DSM 43827		94	94
No Yes	Saccharomonospora viridis DSM 43017		63	62
No Yes	Saccharopolyspora erythraea NRRL 2338		138	136
No Yes	Kribbella flavida DSM 17836		125	125
No Yes	Nocardioides sp. JS614		66	66
No Yes	Propionibacterium acnes KPA171202		26	26
No Yes	Salinispora arenicola CNS-205		93	92
No Yes	Salinispora tropica CNB-440		84	84
No Yes	Gordonia bronchialis DSM 43247		56	56
No Yes	Rhodococcus jostii RHA1		75	75
No Yes	Rhodococcus opacus B4		73	73
No Yes	Rhodococcus erythropolis PR4		61	61
No Yes	Nocardia farcinica IFM 10152		71	70
No Yes	Mycobacterium abscessus		82	82
No Yes	Mycobacterium sp. MCS		74	74
No Yes	Mycobacterium avium ssp. paratuberculosis K-10		89	89
No Yes	Mycobacterium vanbaalenii PYR-1		84	84
No Yes	Mycobacterium tuberculosis H37Rv		89	89
No Yes	Mycobacterium bovis AF2122/97		85	85
No Yes	Mycobacterium ulcerans Agy99		79	79
No Yes	Mycobacterium gilvum PYR-GCK		70	70
No Yes	Mycobacterium marinum M		124	120
No Yes	Mycobacterium smegmatis MC2 155		91	91
No Yes	Mycobacterium leprae TN		29	29
No Yes	Corynebacterium aurimucosum		29	28
No Yes	Corynebacterium kroppenstedtii DSM 44385		28	26
No Yes	Corynebacterium efficiens YS-314		33	33
No Yes	Corynebacterium urealyticum DSM 7109		31	31
No Yes	Corynebacterium jeikeium K411		27	25
No Yes	Corynebacterium glutamicum ATCC 13032 Kitasato		35	35
No Yes	Corynebacterium diphtheriae NCTC 13129		28	28
No Yes	Tropheryma whipplei Twist		8	8
No Yes	Sanguibacter keddieii DSM 10542		37	37
No Yes	Kytococcus sedentarius DSM 20547		31	31
No Yes	Beutenbergia cavernae DSM 12333		57	57
No Yes	Leifsonia xyli ssp. xyli CTCB07		17	17
No Yes	Clavibacter michiganensis ssp. michiganensis NCPPB 382		32	32
No Yes	Jonesia denitrificans DSM 20603		26	26
No Yes	Brachybacterium faecium DSM 4810		40	40
No Yes	Xylanimonas cellulosilytica DSM 15894		36	36
No Yes	Kocuria rhizophila DC2201		24	24
No Yes	Rothia mucilaginosa DY-18		22	22
No Yes	Arthrobacter sp. FB24		44	44
No Yes	Arthrobacter chlorophenolicus A6		39	39
No Yes	Arthrobacter aurescens TC1		36	36
No Yes	Renibacterium salmoninarum ATCC 33209		36	36
No Yes	Micrococcus luteus NCTC 2665		27	27
No Yes	Cryptobacterium curtum DSM 15641		17	17
No Yes	Eggerthella lenta DSM 2243		22	21
No Yes	Slackia heliotrinireducens DSM 20476		38	37
No Yes	Atopobium parvulum DSM 20469		25	25
No Yes	Conexibacter woesei DSM 14684		75	75
No Yes	Rubrobacter xylanophilus DSM 9941		35	35
No Yes	Acidimicrobium ferrooxidans DSM 10331		22	22
No Yes	Denitrovibrio acetiphilus DSM 12809		45	44
No Yes	Deferribacter desulfuricans SSM1		37	37
No Yes	Kosmotoga olearia TBF 19.5.1		25	25
No Yes	Petrotoga mobilis SJ95		23	23
No Yes	Fervidobacterium nodosum Rt17-B1		25	25
No Yes	Thermosipho melanesiensis BI429		29	28
No Yes	Thermosipho africanus TCF52B		24	24
No Yes	Thermotoga lettingae TMO		22	22
No Yes	Thermotoga sp. RQ2		26	26
No Yes	Thermotoga naphthophila RKU-10		26	26
No Yes	Thermotoga petrophila RKU-1		26	26
No Yes	Thermotoga neapolitana DSM 4359		26	26
No Yes	Thermotoga maritima MSB8		27	27
No Yes	Dehalococcoides sp. CBDB1		18	18
No Yes	Dehalococcoides ethenogenes 195		20	20
No Yes	Thermomicrobium roseum DSM 5159		21	21
No Yes	Sphaerobacter thermophilus DSM 20745		45	43
No Yes	Herpetosiphon aurantiacus ATCC 23779		99	98
No Yes	Roseiflexus sp. RS-1		112	109
No Yes	Roseiflexus castenholzii DSM 13941		115	110
No Yes	Chloroflexus sp. Y-400-fl		81	78
No Yes	Chloroflexus aggregans DSM 9485		77	74
No Yes	Chloroflexus aurantiacus J-10-fl		82	79
No Yes	Sulfurihydrogenibium sp. YO3AOP1		33	30
No Yes	Sulfurihydrogenibium azorense Az-Fu1		25	25
No Yes	Persephonella marina EX-H1		28	28
No Yes	Hydrogenobaculum sp. Y04AAS1		23	23
No Yes	Thermocrinis albus DSM 14484		25	23
No Yes	Aquifex aeolicus VF5		29	29
No Yes	Hydrogenobacter thermophilus TK-6		31	30
No Yes	Gemmatimonas aurantiaca T-27		42	41
No Yes	Fibrobacter succinogenes ssp. succinogenes S85		39	39
No Yes	Candidatus Koribacter versatilis Ellin345		55	54
No Yes	Candidatus Solibacter usitatus Ellin6076		127	124
No Yes	Acidobacterium capsulatum ATCC 51196		26	26
No Yes	Elusimicrobium minutum Pei191		17	17
No Yes	uncultured Termite group 1 bacterium phylotype Rs-D17		14	13
No Yes	Pelodictyon phaeoclathratiforme BU-1		53	53
No Yes	Pelodictyon luteolum DSM 273		28	28
No Yes	Chlorobium chlorochromatii CaD3		40	39
No Yes	Chlorobium phaeobacteroides DSM 266		52	51
No Yes	Chlorobium phaeovibrioides DSM 265		27	27
No Yes	Chlorobium limicola DSM 245		44	43
No Yes	Chlorobaculum parvum NCIB 8327		32	32
No Yes	Chlorobium tepidum TLS		37	36
No Yes	Chloroherpeton thalassium ATCC 35110		54	54
No Yes	Prosthecochloris aestuarii DSM 271		36	36
No Yes	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2		5	5
No Yes	Prevotella ruminicola 23		26	25
No Yes	Parabacteroides distasonis ATCC 8503		36	33
No Yes	Porphyromonas gingivalis W83		22	22
No Yes	Bacteroides vulgatus ATCC 8482		36	35
No Yes	Bacteroides thetaiotaomicron VPI-5482		37	37
No Yes	Bacteroides fragilis NCTC 9343		32	32
No Yes	Candidatus Amoebophilus asiaticus 5a2		7	7
No Yes	Salinibacter ruber DSM 13855		37	37
No Yes	Rhodothermus marinus DSM 4252		37	37
No Yes	Chitinophaga pinensis DSM 2588		77	75
No Yes	Dyadobacter fermentans DSM 18053		50	50
No Yes	Cytophaga hutchinsonii ATCC 33406		48	48
No Yes	Spirosoma linguale DSM 74		54	53
No Yes	Pedobacter heparinus DSM 2366		41	40
No Yes	Candidatus Sulcia muelleri GWSS		5	5
No Yes	Zunongwangia profunda SM-A87		40	39
No Yes	Gramella forsetii KT0803		48	48
No Yes	Robiginitalea biformata HTCC2501		33	33
No Yes	Flavobacteriaceae bacterium 3519-10		25	25
No Yes	Capnocytophaga ochracea DSM 7271		39	37
No Yes	Flavobacterium psychrophilum JIP02/86		40	40
No Yes	Flavobacterium johnsoniae UW101		44	44
No Yes	Blattabacterium sp. Bge		5	5
No Yes	Dictyoglomus turgidum DSM 6724		19	19
No Yes	Dictyoglomus thermophilum H-6-12		22	21
No Yes	Candidatus Protochlamydia amoebophila UWE25		26	26
No Yes	Chlamydophila pneumoniae TW-183		12	12
No Yes	Chlamydophila caviae GPIC		12	12
No Yes	Chlamydophila felis Fe/C-56		12	12
No Yes	Chlamydophila abortus S26/3		10	10
No Yes	Chlamydia muridarum Nigg		10	10
No Yes	Chlamydia trachomatis D/UW-3/CX		11	11
No Yes	Coraliomargarita akajimensis DSM 45221		38	38
No Yes	Opitutus terrae PB90-1		75	72
No Yes	Methylacidiphilum infernorum V4		54	51
No Yes	Akkermansia muciniphila ATCC BAA-835		26	25
No Yes	Thermodesulfovibrio yellowstonii DSM 11347		39	38
No Yes	Streptobacillus moniliformis DSM 12112		28	27
No Yes	Sebaldella termitidis ATCC 33386		33	33
No Yes	Leptotrichia buccalis DSM 1135		32	32
No Yes	Fusobacterium nucleatum ssp. nucleatum ATCC 25586		32	31
No Yes	Thermobaculum terrenum ATCC BAA-798		47	47
No Yes	Deinococcus deserti VCD115		32	32
No Yes	Deinococcus geothermalis DSM 11300		27	27
No Yes	Deinococcus radiodurans R1		38	38
No Yes	Meiothermus ruber DSM 1279		32	31
No Yes	Thermus thermophilus HB27 (First sequenced)		32	32
No Yes	Natranaerobius thermophilus JW/NM-WN-LF		38	38
No Yes	Symbiobacterium thermophilum IAM 14863		36	35
No Yes	Anaerococcus prevotii DSM 20548		18	18
No Yes	Finegoldia magna ATCC 29328		28	28
No Yes	Clostridiales genomosp. BVAB3 UPII9-5		27	27
No Yes	Anaerocellum thermophilum DSM 6725		31	30
No Yes	Candidatus Desulforudis audaxviator MP104C		38	36
No Yes	Pelotomaculum thermopropionicum SI		43	41
No Yes	Desulfitobacterium hafniense Y51		58	58
No Yes	Desulfotomaculum reducens MI-1		35	35
No Yes	Desulfotomaculum acetoxidans DSM 771		60	59
No Yes	Eubacterium rectale ATCC 33656		38	38
No Yes	Eubacterium eligens ATCC 27750		36	36
No Yes	Syntrophomonas wolfei ssp. wolfei Goettingen		37	35
No Yes	Heliobacterium modesticaldum Ice1		40	40
No Yes	Alkaliphilus oremlandii OhILAs		43	43
No Yes	Alkaliphilus metalliredigens QYMF		44	44
No Yes	Clostridium phytofermentans ISDg		47	47
No Yes	Clostridium novyi NT		32	32
No Yes	Clostridium kluyveri DSM 555		59	59
No Yes	Clostridium cellulolyticum H10		45	44
No Yes	Clostridium beijerinckii NCIMB 8052		55	55
No Yes	Clostridium thermocellum ATCC 27405		50	49
No Yes	Clostridium tetani E88		29	29
No Yes	Clostridium perfringens 13		31	31
No Yes	Clostridium difficile 630		39	39
No Yes	Clostridium botulinum A ATCC 3502		36	36
No Yes	Clostridium acetobutylicum ATCC 824		42	42
No Yes	Veillonella parvula DSM 2008		30	30
No Yes	Acidaminococcus fermentans DSM 20731		21	21
No Yes	Caldicellulosiruptor saccharolyticus DSM 8903		35	35
No Yes	Coprothermobacter proteolyticus DSM 5265		24	23
No Yes	Carboxydothermus hydrogenoformans Z-2901		36	35
No Yes	Moorella thermoacetica ATCC 39073		33	29
No Yes	Ammonifex degensii KC4		26	26
No Yes	Thermoanaerobacter pseudethanolicus ATCC 33223		28	26
No Yes	Thermoanaerobacter sp. X514		29	28
No Yes	Thermoanaerobacter tengcongensis MB4		28	28
No Yes	Thermoanaerobacter italicus Ab9		27	25
No Yes	Halothermothrix orenii H 168		26	26
No Yes	Enterococcus faecalis V583		28	28
No Yes	Oenococcus oeni PSU-1		15	15
No Yes	Leuconostoc citreum KM20		26	26
No Yes	Leuconostoc mesenteroides ssp. mesenteroides ATCC 8293		24	24
No Yes	Lactobacillus casei ATCC 334		27	27
No Yes	Lactobacillus crispatus ST1		21	21
No Yes	Lactobacillus rhamnosus GG		29	29
No Yes	Lactobacillus johnsonii NCC 533		21	21
No Yes	Lactobacillus salivarius UCC118		19	19
No Yes	Lactobacillus fermentum IFO 3956		23	23
No Yes	Lactobacillus sakei ssp. sakei 23K		24	24
No Yes	Lactobacillus reuteri DSM 20016		25	25
No Yes	Lactobacillus gasseri ATCC 33323		21	21
No Yes	Lactobacillus plantarum WCFS1		27	27
No Yes	Lactobacillus helveticus DPC 4571		23	23
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842		20	20
No Yes	Lactobacillus brevis ATCC 367		28	28
No Yes	Lactobacillus acidophilus NCFM		21	21
No Yes	Pediococcus pentosaceus ATCC 25745		23	23
No Yes	Lactococcus lactis ssp. lactis Il1403		25	25
No Yes	Streptococcus gallolyticus UCN34		27	27
No Yes	Streptococcus equi ssp. zooepidemicus MGCS10565		25	24
No Yes	Streptococcus dysgalactiae ssp. equisimilis GGS_124		22	22
No Yes	Streptococcus mitis B6		37	37
No Yes	Streptococcus uberis 0140J		25	25
No Yes	Streptococcus pyogenes M1 GAS		27	27
No Yes	Streptococcus pneumoniae TIGR4 (Virulent)		30	30
No Yes	Streptococcus agalactiae NEM316		32	32
No Yes	Streptococcus mutans UA159		32	32
No Yes	Streptococcus thermophilus LMG 18311 (Older strain)		30	30
No Yes	Streptococcus suis 05ZYH33		36	36
No Yes	Streptococcus sanguinis SK36		34	34
No Yes	Streptococcus gordonii Challis subCH1		31	30
No Yes	Exiguobacterium sp. AT1b		30	30
No Yes	Exiguobacterium sibiricum 255-15		34	34
No Yes	Bacillus tusciae DSM 2912		33	32
No Yes	Alicyclobacillus acidocaldarius ssp. acidocaldarius DSM 446		35	35
No Yes	Brevibacillus brevis NBRC 100599		77	75
No Yes	Paenibacillus sp. JDR-2		63	62
No Yes	Listeria welshimeri ser. 6b SLCC5334		30	30
No Yes	Listeria innocua Clip11262		34	34
No Yes	Listeria seeligeri ser. 1/2b SLCC3954		29	29
No Yes	Listeria monocytogenes EGD-e		31	31
No Yes	Lysinibacillus sphaericus C3-41		45	45
No Yes	Oceanobacillus iheyensis HTE831		38	38
No Yes	Anoxybacillus flavithermus WK1		40	39
No Yes	Geobacillus sp. WCH70		33	33
No Yes	Geobacillus thermodenitrificans NG80-2		38	38
No Yes	Geobacillus kaustophilus HTA426		37	37
No Yes	Bacillus subtilis ssp. subtilis 168		40	39
No Yes	Bacillus licheniformis ATCC 14580		38	38
No Yes	Bacillus amyloliquefaciens FZB42		41	41
No Yes	Bacillus halodurans C-125		46	46
No Yes	Bacillus weihenstephanensis KBAB4		69	69
No Yes	Bacillus thuringiensis ser. konkukian 97-27		69	68
No Yes	Bacillus cereus ATCC 14579		70	70
No Yes	Bacillus anthracis Ames Ancestor		70	69
No Yes	Bacillus pseudofirmus OF4		31	31
No Yes	Bacillus clausii KSM-K16		46	46
No Yes	Bacillus pumilus SAFR-032		37	37
No Yes	Bacillus megaterium QM B1551		50	49
No Yes	Macrococcus caseolyticus JCSC5402		30	30
No Yes	Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305		25	24
No Yes	Staphylococcus lugdunensis HKU09-01		25	25
No Yes	Staphylococcus haemolyticus JCSC1435		24	24
No Yes	Staphylococcus epidermidis RP62A		29	29
No Yes	Staphylococcus carnosus ssp. carnosus TM300		23	23
No Yes	Staphylococcus aureus ssp. aureus NCTC 8325		24	24
No Yes	Nautilia profundicola AmH		26	26
No Yes	Sulfurospirillum deleyianum DSM 6946		36	36
No Yes	Arcobacter butzleri RM4018		32	32
No Yes	Campylobacter hominis ATCC BAA-381		25	25
No Yes	Campylobacter lari RM2100		27	27
No Yes	Campylobacter curvus 525.92		30	30
No Yes	Campylobacter concisus 13826		23	23
No Yes	Campylobacter jejuni ssp. jejuni NCTC 11168		30	30
No Yes	Campylobacter fetus ssp. fetus 82-40		35	35
No Yes	Sulfurimonas denitrificans DSM 1251		49	48
No Yes	Wolinella succinogenes DSM 1740		31	31
No Yes	Helicobacter hepaticus ATCC 51449		36	35
No Yes	Helicobacter mustelae 12198		24	24
No Yes	Helicobacter acinonychis Sheeba		47	47
No Yes	Helicobacter pylori 26695		42	40
No Yes	Nitratiruptor sp. SB155-2		33	33
No Yes	Sulfurovum sp. NBC37-1		36	34
No Yes	Bdellovibrio bacteriovorus HD100		50	50
No Yes	Syntrophus aciditrophicus SB		47	46
No Yes	Syntrophobacter fumaroxidans MPOB		77	77
No Yes	Desulfotalea psychrophila LSv54		43	42
No Yes	Desulfatibacillum alkenivorans AK-01		74	73
No Yes	Desulfobacterium autotrophicum HRM2		69	67
No Yes	Desulfococcus oleovorans Hxd3		76	75
No Yes	Desulfohalobium retbaense DSM 5692		37	37
No Yes	Desulfomicrobium baculatum DSM 4028		55	54
No Yes	Lawsonia intracellularis PHE/MN1-00		27	27
No Yes	Desulfovibrio magneticus RS-1		85	83
No Yes	Desulfovibrio vulgaris Hildenborough		52	51
No Yes	Desulfovibrio salexigens DSM 2638		70	70
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans G20		63	61
No Yes	Pelobacter propionicus DSM 2379		55	55
No Yes	Pelobacter carbinolicus DSM 2380		56	55
No Yes	Geobacter uraniireducens Rf4		81	81
No Yes	Geobacter sp. FRC-32		68	66
No Yes	Geobacter lovleyi SZ		74	73
No Yes	Geobacter bemidjiensis Bem		72	72
No Yes	Geobacter sulfurreducens PCA		56	54
No Yes	Geobacter metallireducens GS-15		65	64
No Yes	Haliangium ochraceum DSM 14365		120	118
No Yes	Sorangium cellulosum So ce 56		141	138
No Yes	Anaeromyxobacter sp. Fw109-5		84	82
No Yes	Anaeromyxobacter dehalogenans 2CP-C		84	82
No Yes	Myxococcus xanthus DK 1622		119	117
No Yes	Magnetococcus sp. MC-1		86	84
No Yes	Sideroxydans lithotrophicus ES-1		60	59
No Yes	Aromatoleum aromaticum EbN1		57	57
No Yes	Dechloromonas aromatica RCB		62	62
No Yes	Thauera sp. MZ1T		66	65
No Yes	Laribacter hongkongensis HLHK9		47	47
No Yes	Chromobacterium violaceum ATCC 12472		57	57
No Yes	Neisseria meningitidis Z2491		38	37
No Yes	Neisseria gonorrhoeae FA 1090		43	43
No Yes	Methylotenera mobilis JLW8		36	36
No Yes	Methylovorus sp. SIP3-4		43	43
No Yes	Methylobacillus flagellatus KT		38	38
No Yes	Thiobacillus denitrificans ATCC 25259		49	48
No Yes	Candidatus Accumulibacter phosphatis clade IIA UW-1		79	79
No Yes	Methylibium petroleiphilum PM1		50	49
No Yes	Leptothrix cholodnii SP-6		52	51
No Yes	Ralstonia eutropha JMP134		55	54
No Yes	Cupriavidus taiwanensis		56	56
No Yes	Ralstonia metallidurans CH34		55	53
No Yes	Ralstonia pickettii 12J		51	51
No Yes	Ralstonia solanacearum GMI1000		44	44
No Yes	Polynucleobacter necessarius ssp. asymbioticus QLW-P1DMWA-1		33	33
No Yes	Burkholderia phytofirmans PsJN		64	63
No Yes	Burkholderia phymatum STM815		56	56
No Yes	Burkholderia thailandensis E264		88	87
No Yes	Burkholderia pseudomallei K96243		83	83
No Yes	Burkholderia mallei ATCC 23344		59	59
No Yes	Burkholderia sp. 383		74	74
No Yes	Burkholderia ambifaria AMMD		68	68
No Yes	Burkholderia cenocepacia AU 1054		67	66
No Yes	Burkholderia multivorans ATCC 17616		60	60
No Yes	Burkholderia vietnamiensis G4		64	63
No Yes	Burkholderia xenovorans LB400		73	72
No Yes	Burkholderia glumae BGR1		84	82
No Yes	Verminephrobacter eiseniae EF01-2		64	60
No Yes	Delftia acidovorans SPH-1		55	55
No Yes	Polaromonas sp. JS666		61	61
No Yes	Polaromonas naphthalenivorans CJ2		43	43
No Yes	Variovorax paradoxus S110		54	53
No Yes	Rhodoferax ferrireducens T118		59	59
No Yes	Diaphorobacter sp. TPSY		49	49
No Yes	Acidovorax sp. JS42		66	65
No Yes	Acidovorax citrulli AAC00-1		71	71
No Yes	Comamonas sp. CNB-1		46	46
No Yes	Herminiimonas arsenicoxydans		52	51
No Yes	Janthinobacterium sp. Marseille		56	55
No Yes	Bordetella petrii DSM 12804		50	50
No Yes	Bordetella avium 197N		39	39
No Yes	Bordetella pertussis Tohama I		30	29
No Yes	Bordetella parapertussis 12822		33	33
No Yes	Bordetella bronchiseptica RB50		43	43
No Yes	Nitrosospira multiformis ATCC 25196		47	47
No Yes	Nitrosomonas eutropha C91		43	43
No Yes	Nitrosomonas europaea ATCC 19718		40	40
No Yes	Caulobacter sp. K31		63	63
No Yes	Caulobacter crescentus CB15		55	54
No Yes	Caulobacter segnis ATCC 21756		56	56
No Yes	Phenylobacterium zucineum HLK1		65	64
No Yes	Erythrobacter litoralis HTCC2594		47	47
No Yes	Sphingopyxis alaskensis RB2256		42	42
No Yes	Novosphingobium aromaticivorans DSM 12444		47	44
No Yes	Sphingobium japonicum UT26S		50	50
No Yes	Sphingomonas wittichii RW1		62	62
No Yes	Zymomonas mobilis ssp. mobilis ZM4		23	23
No Yes	Maricaulis maris MCS10		47	47
No Yes	Hirschia baltica ATCC 49814		41	41
No Yes	Hyphomonas neptunium ATCC 15444		44	43
No Yes	Dinoroseobacter shibae DFL 12		41	41
No Yes	Jannaschia sp. CCS1		58	56
No Yes	Ruegeria sp. TM1040		38	37
No Yes	Ruegeria pomeroyi DSS-3		50	50
No Yes	Roseobacter denitrificans OCh 114		44	44
No Yes	Rhodobacter sphaeroides 2.4.1		47	47
No Yes	Rhodobacter capsulatus SB1003		55	54
No Yes	Paracoccus denitrificans PD1222		57	57
No Yes	Magnetospirillum magneticum AMB-1		80	80
No Yes	Rhodospirillum centenum SW		76	76
No Yes	Rhodospirillum rubrum ATCC 11170		67	65
No Yes	Azospirillum sp. B510		56	53
No Yes	Granulibacter bethesdensis CGDNIH1		51	50
No Yes	Gluconacetobacter diazotrophicus PAl 5		48	48
No Yes	Gluconobacter oxydans 621H		33	33
No Yes	Acetobacter pasteurianus IFO 3283-01		33	33
No Yes	alpha proteobacterium IMCC1322		41	40
No Yes	Candidatus Pelagibacter ubique HTCC1062		25	25
No Yes	Neorickettsia sennetsu Miyayama		13	13
No Yes	Neorickettsia risticii Illinois		13	13
No Yes	Ehrlichia chaffeensis Arkansas		12	12
No Yes	Ehrlichia canis Jake		12	12
No Yes	Ehrlichia ruminantium Welgevonden		11	11
No Yes	Anaplasma phagocytophilum HZ		12	12
No Yes	Anaplasma marginale St. Maries		13	13
No Yes	Anaplasma centrale Israel		12	12
No Yes	Orientia tsutsugamushi Boryong		25	25
No Yes	Rickettsia bellii RML369-C		31	30
No Yes	Rickettsia canadensis McKiel		17	17
No Yes	Rickettsia typhi Wilmington		17	16
No Yes	Rickettsia prowazekii Madrid E		17	16
No Yes	Rickettsia peacockii Rustic		16	15
No Yes	Rickettsia felis URRWXCal2		24	23
No Yes	Rickettsia massiliae MTU5		19	18
No Yes	Rickettsia africae ESF-5		20	19
No Yes	Rickettsia akari Hartford		21	20
No Yes	Rickettsia rickettsii Sheila Smith		21	20
No Yes	Rickettsia conorii Malish 7		20	19
No Yes	Wolbachia endosymbiont of Culex_quinquefasciatus Pel		15	15
No Yes	Wolbachia endosymbiont of Drosophila melanogaster (Genus only)		13	13
No Yes	Wolbachia endosymbiont TRS of Brugia malayi		10	10
No Yes	Wolbachia sp. wRi		13	13
No Yes	Xanthobacter autotrophicus Py2		64	62
No Yes	Azorhizobium caulinodans ORS 571		66	65
No Yes	Methylobacterium chloromethanicum CM4		67	66
No Yes	Methylobacterium extorquens PA1		72	72
No Yes	Methylobacterium sp. 4-46		89	89
No Yes	Methylobacterium populi BJ001		71	71
No Yes	Methylobacterium nodulans ORS 2060		110	110
No Yes	Methylobacterium radiotolerans JCM 2831		76	75
No Yes	Ochrobactrum anthropi ATCC 49188		53	52
No Yes	Brucella microti CCM 4915		36	36
No Yes	Brucella canis ATCC 23365		35	35
No Yes	Brucella suis 1330		36	36
No Yes	Brucella melitensis bv. 1 16M		37	37
No Yes	Brucella ovis ATCC 25840		33	33
No Yes	Brucella abortus bv. 1 9-941		32	32
No Yes	Sinorhizobium medicae WSM419		45	45
No Yes	Sinorhizobium meliloti 1021		39	39
No Yes	Rhizobium etli CFN 42		62	62
No Yes	Rhizobium sp. NGR234		46	46
No Yes	Rhizobium leguminosarum bv. viciae 3841		68	68
No Yes	Agrobacterium vitis S4		55	55
No Yes	Agrobacterium radiobacter K84		73	73
No Yes	Agrobacterium tumefaciens C58		57	56
No Yes	Candidatus Liberibacter asiaticus psy62		19	19
No Yes	Chelativorans sp. BNC1		59	58
No Yes	Parvibaculum lavamentivorans DS-1		73	71
No Yes	Mesorhizobium loti MAFF303099		87	87
No Yes	Methylocella silvestris BL2		59	59
No Yes	Beijerinckia indica ssp. indica ATCC 9039		58	56
No Yes	Oligotropha carboxidovorans OM5		59	59
No Yes	Rhodopseudomonas palustris CGA009		73	73
No Yes	Nitrobacter winogradskyi Nb-255		57	55
No Yes	Nitrobacter hamburgensis X14		59	58
No Yes	Bradyrhizobium sp. ORS278		87	85
No Yes	Bradyrhizobium japonicum USDA 110		87	87
No Yes	Bartonella tribocorum CIP 105476		46	46
No Yes	Bartonella henselae Houston-1		26	26
No Yes	Bartonella grahamii as4aup		37	36
No Yes	Bartonella quintana Toulouse		23	22
No Yes	Bartonella bacilliformis KC583		25	25
No Yes	Acidithiobacillus ferrooxidans ATCC 23270		50	50
No Yes	Mannheimia succiniciproducens MBEL55E		30	29
No Yes	Aggregatibacter aphrophilus NJ8700		37	36
No Yes	Aggregatibacter actinomycetemcomitans D11S-1		38	37
No Yes	Haemophilus somnus 129PT		27	26
No Yes	Pasteurella multocida ssp. multocida Pm70		35	34
No Yes	Haemophilus parasuis SH0165		43	42
No Yes	Haemophilus ducreyi 35000HP		34	33
No Yes	Haemophilus influenzae Rd KW20		32	32
No Yes	Actinobacillus succinogenes 130Z		32	31
No Yes	Actinobacillus pleuropneumoniae L20		35	34
No Yes	Tolumonas auensis DSM 9187		48	47
No Yes	Aeromonas salmonicida ssp. salmonicida A449		50	49
No Yes	Aeromonas hydrophila ssp. hydrophila ATCC 7966		55	54
No Yes	Aliivibrio salmonicida LFI1238		48	47
No Yes	Vibrio fischeri ES114		50	49
No Yes	Vibrio parahaemolyticus RIMD 2210633		53	52
No Yes	Vibrio harveyi ATCC BAA-1116		56	55
No Yes	Vibrio sp. Ex25		54	53
No Yes	Vibrio splendidus LGP32		57	55
No Yes	Vibrio vulnificus YJ016 (Good annotation)		57	55
No Yes	Vibrio cholerae O1 biov. El Tor N16961		49	48
No Yes	Photobacterium profundum SS9		53	52
No Yes	Psychromonas ingrahamii 37		52	50
No Yes	Idiomarina loihiensis L2TR		40	39
No Yes	Shewanella piezotolerans WP3		56	55
No Yes	Shewanella loihica PV-4		65	64
No Yes	Shewanella halifaxensis HAW-EB4		60	59
No Yes	Shewanella sediminis HAW-EB3		68	67
No Yes	Shewanella denitrificans OS217		64	62
No Yes	Shewanella pealeana ATCC 700345		55	54
No Yes	Shewanella oneidensis MR-1		66	65
No Yes	Shewanella baltica OS155		65	64
No Yes	Shewanella woodyi ATCC 51908		68	67
No Yes	Shewanella sp. MR-7		59	58
No Yes	Shewanella amazonensis SB2B		57	56
No Yes	Shewanella violacea DSS12		55	54
No Yes	Shewanella frigidimarina NCIMB 400		57	56
No Yes	Shewanella putrefaciens CN-32		69	67
No Yes	Colwellia psychrerythraea 34H		51	50
No Yes	Pseudoalteromonas atlantica T6c		53	52
No Yes	Pseudoalteromonas haloplanktis TAC125		50	48
No Yes	Teredinibacter turnerae T7901		65	64
No Yes	Saccharophagus degradans 2-40		58	57
No Yes	Marinobacter aquaeolei VT8		59	57
No Yes	Alteromonas macleodii Deep ecotype		50	49
No Yes	Hahella chejuensis KCTC 2396		80	79
No Yes	Alcanivorax borkumensis SK2		50	49
No Yes	Marinomonas sp. MWYL1		47	45
No Yes	Chromohalobacter salexigens DSM 3043		43	42
No Yes	Methylococcus capsulatus Bath		68	64
No Yes	Dichelobacter nodosus VCS1703A		26	24
No Yes	Stenotrophomonas maltophilia R551-3		49	48
No Yes	Xylella fastidiosa 9a5c		41	40
No Yes	Xanthomonas axonopodis pv. citri 306		59	58
No Yes	Xanthomonas albilineans		51	50
No Yes	Xanthomonas oryzae pv. oryzae KACC10331		55	54
No Yes	Xanthomonas campestris pv. campestris ATCC 33913 (Completed 2001)		60	58
No Yes	Halothiobacillus neapolitanus c2		44	43
No Yes	Alkalilimnicola ehrlichii MLHE-1		50	49
No Yes	Thioalkalivibrio sp. HL-EbGR7		60	60
No Yes	Halorhodospira halophila SL1		52	52
No Yes	Allochromatium vinosum DSM 180		65	61
No Yes	Nitrosococcus halophilus Nc4		68	68
No Yes	Nitrosococcus oceani ATCC 19707		65	63
No Yes	Coxiella burnetii RSA 493		19	19
No Yes	Legionella longbeachae NSW150		59	58
No Yes	Legionella pneumophila ssp. pneumophila Philadelphia 1		54	52
No Yes	Kangiella koreensis DSM 16069		51	50
No Yes	Baumannia cicadellinicola Hc		6	6
No Yes	Candidatus Vesicomyosocius okutanii HA		13	13
No Yes	Candidatus Ruthia magnifica Cm		17	17
No Yes	Cronobacter turicensis z3032		45	44
No Yes	Cronobacter sakazakii ATCC BAA-894		48	47
No Yes	Candidatus Riesia pediculicola USDA		12	12
No Yes	Dickeya zeae Ech1591		49	48
No Yes	Dickeya dadantii Ech703		55	52
No Yes	Candidatus Hamiltonella defensa 5AT		28	27
No Yes	Candidatus Blochmannia floridanus		8	8
No Yes	Pectobacterium wasabiae WPP163		51	50
No Yes	Pectobacterium atrosepticum SCRI1043		50	49
No Yes	Pectobacterium carotovorum ssp. carotovorum PC1		51	50
No Yes	Sodalis glossinidius morsitans		41	40
No Yes	Pantoea ananatis LMG 20103		51	50
No Yes	Wigglesworthia glossinidia		9	9
No Yes	Buchnera aphidicola APS		11	10
No Yes	Photorhabdus asymbiotica		62	61
No Yes	Photorhabdus luminescens ssp. laumondii TTO1		66	65
No Yes	Edwardsiella ictaluri 93-146		50	48
No Yes	Edwardsiella tarda EIB202		45	43
No Yes	Yersinia pseudotuberculosis IP 32953		53	51
No Yes	Yersinia pestis CO92		47	45
No Yes	Yersinia enterocolitica ssp. enterocolitica 8081		52	50
No Yes	Xenorhabdus bovienii SS-2004		47	46
No Yes	Shigella sonnei Ss046		45	44
No Yes	Shigella flexneri 2a 2457T		43	42
No Yes	Shigella dysenteriae Sd197		44	43
No Yes	Shigella boydii Sb227		48	47
No Yes	Serratia proteamaculans 568		48	47
No Yes	Salmonella enterica ssp. enterica ser. Typhimurium LT2		49	47
No Yes	Proteus mirabilis HI4320		53	48
No Yes	Klebsiella variicola At-22		51	50
No Yes	Klebsiella pneumoniae ssp. pneumoniae MGH 78578		49	48
No Yes	Escherichia fergusonii ATCC 35469		47	46
No Yes	Escherichia coli K-12 subMG1655		46	45
No Yes	Erwinia tasmaniensis Et1/99		47	46
No Yes	Erwinia pyrifoliae Ep1/96		56	54
No Yes	Erwinia amylovora ATCC 49946		51	49
No Yes	Enterobacter sp. 638		50	49
No Yes	Citrobacter rodentium ICC168		56	55
No Yes	Citrobacter koseri ATCC BAA-895		55	52
No Yes	Azotobacter vinelandii DJ		54	53
No Yes	Pseudomonas entomophila L48		65	64
No Yes	Pseudomonas syringae pv. tomato DC3000		67	65
No Yes	Pseudomonas stutzeri A1501		64	63
No Yes	Pseudomonas putida KT2440		60	59
No Yes	Pseudomonas fluorescens Pf-5		78	75
No Yes	Pseudomonas mendocina ymp		62	61
No Yes	Pseudomonas aeruginosa PAO1		80	79
No Yes	Cellvibrio japonicus Ueda107		51	50
No Yes	Psychrobacter sp. PRwf-1		31	30
No Yes	Psychrobacter arcticus 273-4		36	35
No Yes	Psychrobacter cryohalolentis K5		40	39
No Yes	Acinetobacter sp. ADP1		43	42
No Yes	Acinetobacter baumannii ATCC 17978		40	38
No Yes	Thiomicrospira crunogena XCL-2		47	46
No Yes	Francisella philomiragia ssp. philomiragia ATCC 25017		33	31
No Yes	Francisella tularensis ssp. tularensis SCHU S4		29	28
No Yes	Gloeobacter violaceus PCC 7421		74	73
No Yes	Acaryochloris marina MBIC11017		108	107
No Yes	Prochlorococcus marinus MIT 9313		37	37
No Yes	Nostoc punctiforme PCC 73102		102	101
No Yes	Nostoc sp. PCC 7120		82	81
No Yes	Anabaena variabilis ATCC 29413		80	78
No Yes	Trichodesmium erythraeum IMS101		115	110
No Yes	Thermosynechococcus elongatus BP-1		37	36
No Yes	cyanobacterium UCYN-A		21	21
No Yes	Cyanothece sp. ATCC 51142		86	86
No Yes	Synechocystis sp. PCC 6803		53	53
No Yes	Synechococcus elongatus PCC 6301		48	48
No Yes	Microcystis aeruginosa NIES-843		111	104
No Yes	Nitrosopumilus maritimus SCM1		30	30
No Yes	Nanoarchaeum equitans Kin4-M		12	12
No Yes	Candidatus Korarchaeum cryptofilum OPF8		25	24
No Yes	Methanocella paludicola SANAE		50	48
No Yes	Methanosaeta thermophila PT		29	29
No Yes	Methanococcoides burtonii DSM 6242		34	34
No Yes	Methanosarcina acetivorans C2A		115	115
No Yes	Methanosarcina mazei Go1		62	62
No Yes	Methanosarcina barkeri Fusaro		85	83
No Yes	Methanohalophilus mahii DSM 5219		31	31
No Yes	Methanosphaerula palustris E1-9c		59	58
No Yes	Candidatus Methanoregula boonei 6A8		46	45
No Yes	Methanospirillum hungatei JF-1		74	73
No Yes	Methanocorpusculum labreanum Z		34	34
No Yes	Methanoculleus marisnigri JR1		45	44
No Yes	Methanopyrus kandleri AV19		45	44
No Yes	Ferroglobus placidus DSM 10642		38	38
No Yes	Archaeoglobus profundus DSM 5631		28	28
No Yes	Archaeoglobus fulgidus DSM 4304		32	32
No Yes	Thermococcus onnurineus NA1		41	41
No Yes	Thermococcus kodakarensis KOD1		40	40
No Yes	Thermococcus gammatolerans EJ3		40	39
No Yes	Thermococcus sibiricus MM 739		34	34
No Yes	Pyrococcus horikoshii OT3		42	41
No Yes	Pyrococcus abyssi GE5		40	40
No Yes	Pyrococcus furiosus DSM 3638		37	37
No Yes	Thermoplasma volcanium GSS1		38	34
No Yes	Thermoplasma acidophilum DSM 1728		31	29
No Yes	Picrophilus torridus DSM 9790		22	22
No Yes	Haloquadratum walsbyi DSM 16790		33	33
No Yes	Halomicrobium mukohataei DSM 12286		36	36
No Yes	Halorhabdus utahensis DSM 12940		36	36
No Yes	Haloterrigena turkmenica DSM 5511		51	51
No Yes	Natronomonas pharaonis DSM 2160		37	37
No Yes	Natrialba magadii ATCC 43099		44	43
No Yes	Halorubrum lacusprofundi ATCC 49239		37	36
No Yes	Haloferax volcanii DS2		36	36
No Yes	Halobacterium salinarum R1		30	30
No Yes	Halobacterium sp. NRC-1		31	31
No Yes	Haloarcula marismortui ATCC 43049		35	35
No Yes	Methanocaldococcus sp. FS406-22		36	35
No Yes	Methanocaldococcus fervens AG86		42	42
No Yes	Methanocaldococcus vulcanius M7		43	41
No Yes	Methanocaldococcus jannaschii DSM 2661		44	44
No Yes	Methanococcus aeolicus Nankai-3		25	25
No Yes	Methanococcus maripaludis S2		31	31
No Yes	Methanococcus vannielii SB		35	35
No Yes	Methanothermobacter thermautotrophicus Delta H		22	22
No Yes	Methanosphaera stadtmanae DSM 3091		20	20
No Yes	Methanobrevibacter ruminantium M1		38	38
No Yes	Methanobrevibacter smithii ATCC 35061		29	29
No Yes	uncultured methanogenic archaeon RC-I		51	50
No Yes	Aciduliprofundum boonei T469		27	25
No Yes	Hyperthermus butylicus DSM 5456		35	34
No Yes	Aeropyrum pernix K1		29	28
No Yes	Ignicoccus hospitalis KIN4/I		27	27
No Yes	Staphylothermus marinus F1		32	31
No Yes	Desulfurococcus kamchatkensis 1221n		26	25
No Yes	Metallosphaera sedula DSM 5348		31	31
No Yes	Sulfolobus tokodaii 7		36	36
No Yes	Sulfolobus islandicus Y.N.15.51		35	34
No Yes	Sulfolobus solfataricus P2		39	38
No Yes	Sulfolobus acidocaldarius DSM 639		31	31
No Yes	Thermofilum pendens Hrk 5		27	27
No Yes	Caldivirga maquilingensis IC-167		31	31
No Yes	Pyrobaculum calidifontis JCM 11548		32	32
No Yes	Pyrobaculum arsenaticum DSM 13514		29	29
No Yes	Pyrobaculum aerophilum IM2		32	32
No Yes	Pyrobaculum islandicum DSM 4184		36	35
No Yes	Thermoproteus neutrophilus V24Sta		34	34
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	99	97
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	114	110
No Yes	Cryptococcus neoformans var. grubii H99		68	67
No Yes	Cryptococcus neoformans B-3501A		69	69
No Yes	Ajellomyces dermatitidis ER-3		95	94
No Yes	Histoplasma capsulatum H143		95	94
No Yes	Histoplasma capsulatum H88		100	98
No Yes	Histoplasma capsulatum G186AR		105	102
No Yes	Paracoccidioides brasiliensis Pb01		96	94
No Yes	Paracoccidioides brasiliensis Pb03		95	92
No Yes	Coccidioides posadasii str. Silveira		109	109
No Yes	Coccidioides immitis RMSCC 3703		103	103
No Yes	Coccidioides immitis RMSCC 2394		108	108
No Yes	Coccidioides immitis H538.4		94	94
No Yes	Aspergillus fumigatus A1163		119	117
No Yes	Candida albicans WO-1		60	59
No Yes	Saccharomyces cerevisiae YJM789		49	49
No Yes	Saccharomyces cerevisiae RM11-1a		44	44
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	50	50
No Yes	Schizosaccharomyces pombe 972h-		66	66
No Yes	Batrachochytrium dendrobatidis JAM81		77	77
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	318	300
No Yes	Plasmodium falciparum HB3		51	49
No Yes	Plasmodium falciparum Dd2		37	37
No Yes	Candidatus Phytoplasma australiense		23	23
No Yes	Ureaplasma parvum ser. 3 ATCC 27815		13	13
No Yes	Mycoplasma agalactiae		19	19
No Yes	Mycoplasma hyopneumoniae 7448		13	13
No Yes	Mycoplasma hyopneumoniae J		14	14
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis JB197		50	50
No Yes	Leptospira interrogans ser. Copenhageni Fiocruz L1-130		50	50
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Ames)		47	46
No Yes	Treponema pallidum ssp. pallidum SS14		11	11
No Yes	Borrelia burgdorferi ZS7		9	9
No Yes	Bifidobacterium longum ssp. infantis ATCC 15697		22	22
No Yes	Bifidobacterium longum		18	18
No Yes	Bifidobacterium animalis ssp. lactis Bl-04		16	16
No Yes	Bifidobacterium animalis ssp. lactis DSM 10140		16	16
No Yes	Frankia sp. EAN1pec		137	136
No Yes	Propionibacterium acnes SK137		24	24
No Yes	Mycobacterium sp. KMS		74	74
No Yes	Mycobacterium sp. JLS		82	81
No Yes	Mycobacterium avium 104		97	97
No Yes	Mycobacterium tuberculosis KZN 1435		91	91
No Yes	Mycobacterium tuberculosis H37Ra		89	89
No Yes	Mycobacterium tuberculosis F11		88	88
No Yes	Mycobacterium tuberculosis CDC1551		87	87
No Yes	Mycobacterium bovis BCG Tokyo 172		85	85
No Yes	Mycobacterium bovis BCG Pasteur 1173P2		85	85
No Yes	Mycobacterium leprae Br4923		29	29
No Yes	Corynebacterium glutamicum R		31	31
No Yes	Corynebacterium glutamicum ATCC 13032 Bielefeld		35	35
No Yes	Tropheryma whipplei TW08/27		8	8
No Yes	Clavibacter michiganensis ssp. sepedonicus		31	31
No Yes	Dehalococcoides sp. GT		20	19
No Yes	Dehalococcoides sp. VS		20	20
No Yes	Dehalococcoides sp. BAV1		21	20
No Yes	Chlorobium phaeobacteroides BS1		50	50
No Yes	Porphyromonas gingivalis ATCC 33277		22	21
No Yes	Bacteroides fragilis YCH46		37	37
No Yes	Salinibacter ruber		40	40
No Yes	Candidatus Sulcia muelleri DMIN		4	4
No Yes	Candidiatus Sulcia muelleri SMDSEM		4	4
No Yes	Blattabacterium sp. BPLAN		5	5
No Yes	Chlamydophila pneumoniae J138		12	12
No Yes	Chlamydophila pneumoniae CWL029		12	12
No Yes	Chlamydophila pneumoniae AR39		12	12
No Yes	Chlamydia trachomatis B/TZ1A828/OT		11	11
No Yes	Chlamydia trachomatis B/Jali20/OT		11	11
No Yes	Chlamydia trachomatis L2b/UCH-1/proctitis		11	11
No Yes	Chlamydia trachomatis 434/Bu		11	11
No Yes	Chlamydia trachomatis A/HAR-13		11	11
No Yes	Thermus thermophilus HB8		30	30
No Yes	Desulfitobacterium hafniense DCB-2		56	56
No Yes	Clostridium kluyveri NBRC 12016		59	59
No Yes	Clostridium perfringens SM101		30	30
No Yes	Clostridium perfringens ATCC 13124		36	36
No Yes	Clostridium difficile R20291		34	34
No Yes	Clostridium difficile CD196		33	33
No Yes	Clostridium botulinum F Langeland		37	37
No Yes	Clostridium botulinum E3 Alaska E43		35	35
No Yes	Clostridium botulinum B1 Okra		39	39
No Yes	Clostridium botulinum Ba4 657		42	41
No Yes	Clostridium botulinum B Eklund 17B		37	37
No Yes	Clostridium botulinum A2 Kyoto		39	39
No Yes	Clostridium botulinum A3 Loch Maree		36	36
No Yes	Clostridium botulinum A Hall		40	40
No Yes	Clostridium botulinum A ATCC 19397		39	39
No Yes	Lactobacillus casei BL23		28	28
No Yes	Lactobacillus rhamnosus Lc 705		28	28
No Yes	Lactobacillus johnsonii FI9785		24	24
No Yes	Lactobacillus reuteri JCM 1112		25	25
No Yes	Lactobacillus plantarum JDM1		27	27
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC BAA-365		19	19
No Yes	Lactococcus lactis ssp. lactis KF147		34	34
No Yes	Lactococcus lactis ssp. cremoris MG1363		29	29
No Yes	Lactococcus lactis ssp. cremoris SK11		30	30
No Yes	Streptococcus equi ssp. equi 4047		36	35
No Yes	Streptococcus equi ssp. zooepidemicus		31	30
No Yes	Streptococcus pyogenes MGAS10750		31	31
No Yes	Streptococcus pyogenes MGAS10270		27	27
No Yes	Streptococcus pyogenes MGAS2096		30	30
No Yes	Streptococcus pyogenes MGAS9429		26	26
No Yes	Streptococcus pyogenes MGAS6180		25	25
No Yes	Streptococcus pyogenes NZ131		24	24
No Yes	Streptococcus pyogenes MGAS8232		30	30
No Yes	Streptococcus pyogenes MGAS10394		26	26
No Yes	Streptococcus pyogenes Manfredo		28	28
No Yes	Streptococcus pyogenes MGAS315		26	26
No Yes	Streptococcus pyogenes SSI-1		26	26
No Yes	Streptococcus pyogenes MGAS5005		27	27
No Yes	Streptococcus pneumoniae ATCC 700669		31	31
No Yes	Streptococcus pneumoniae CGSP14		35	35
No Yes	Streptococcus pneumoniae G54		36	36
No Yes	Streptococcus pneumoniae P1031		32	32
No Yes	Streptococcus pneumoniae JJA		29	29
No Yes	Streptococcus pneumoniae 70585		31	31
No Yes	Streptococcus pneumoniae Hungary19A-6		34	34
No Yes	Streptococcus pneumoniae Taiwan19F-14		31	31
No Yes	Streptococcus pneumoniae D39		29	29
No Yes	Streptococcus pneumoniae R6 (Non-virulent)		29	29
No Yes	Streptococcus agalactiae A909		32	32
No Yes	Streptococcus agalactiae 2603V/R		30	30
No Yes	Streptococcus mutans NN2025		34	34
No Yes	Streptococcus thermophilus LMD-9		28	28
No Yes	Streptococcus thermophilus CNRZ1066 (Younger strain)		31	31
No Yes	Streptococcus suis BM407		32	32
No Yes	Streptococcus suis SC84		30	30
No Yes	Streptococcus suis 98HAH33		34	34
No Yes	Streptococcus suis P1/7		27	27
No Yes	Listeria monocytogenes 08-5578		36	36
No Yes	Listeria monocytogenes 08-5923		34	34
No Yes	Listeria monocytogenes Clip80459		31	31
No Yes	Listeria monocytogenes HCC23		31	31
No Yes	Listeria monocytogenes 4b F2365		30	30
No Yes	Geobacillus sp. Y412MC61		37	37
No Yes	Geobacillus sp. Y412MC10		69	68
No Yes	Bacillus licheniformis ATCC 14580		39	39
No Yes	Bacillus cytotoxicus NVH 391-98		42	42
No Yes	Bacillus thuringiensis Al Hakam		69	68
No Yes	Bacillus cereus 03BB102		72	71
No Yes	Bacillus cereus AH820		71	70
No Yes	Bacillus cereus AH187		70	70
No Yes	Bacillus cereus B4264		69	69
No Yes	Bacillus cereus G9842		68	68
No Yes	Bacillus cereus Q1		73	73
No Yes	Bacillus cereus E33L		72	71
No Yes	Bacillus cereus ATCC 10987		80	79
No Yes	Bacillus anthracis A0248		69	68
No Yes	Bacillus anthracis CDC 684		70	69
No Yes	Bacillus anthracis Sterne		70	69
No Yes	Bacillus anthracis Ames		70	69
No Yes	Bacillus megaterium DSM319		47	46
No Yes	Staphylococcus epidermidis ATCC 12228		20	20
No Yes	Staphylococcus aureus RF122		25	25
No Yes	Staphylococcus aureus ssp. aureus ED98		24	24
No Yes	Staphylococcus aureus ssp. aureus Newman		24	24
No Yes	Staphylococcus aureus ssp. aureus Mu3		28	28
No Yes	Staphylococcus aureus ssp. aureus USA300_TCH1516		25	25
No Yes	Staphylococcus aureus ssp. aureus USA300_FPR3757		25	25
No Yes	Staphylococcus aureus ssp. aureus JH1		27	27
No Yes	Staphylococcus aureus ssp. aureus JH9		27	27
No Yes	Staphylococcus aureus ssp. aureus MSSA476		25	25
No Yes	Staphylococcus aureus ssp. aureus MRSA252		27	27
No Yes	Staphylococcus aureus ssp. aureus MW2		24	24
No Yes	Staphylococcus aureus ssp. aureus N315		33	33
No Yes	Staphylococcus aureus ssp. aureus Mu50		28	28
No Yes	Staphylococcus aureus ssp. aureus COL		24	24
No Yes	Campylobacter jejuni RM1221		31	31
No Yes	Campylobacter jejuni ssp. jejuni 81116		31	31
No Yes	Campylobacter jejuni ssp. jejuni 81-176		29	29
No Yes	Campylobacter jejuni ssp. doylei 269.97		37	37
No Yes	Helicobacter pylori B38		34	34
No Yes	Helicobacter pylori P12		42	41
No Yes	Helicobacter pylori G27		48	48
No Yes	Helicobacter pylori Shi470		47	47
No Yes	Helicobacter pylori HPAG1		52	52
No Yes	Helicobacter pylori J99		44	44
No Yes	Desulfovibrio vulgaris DP4		50	49
No Yes	Desulfovibrio vulgaris Miyazaki F		45	44
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans ATCC 27774		41	41
No Yes	Geobacter sp. M21		61	61
No Yes	Anaeromyxobacter sp. K		81	81
No Yes	Anaeromyxobacter dehalogenans 2CP-1		87	86
No Yes	Azoarcus sp. BH72		67	66
No Yes	Neisseria meningitidis alpha14		41	41
No Yes	Neisseria meningitidis 053442		42	41
No Yes	Neisseria meningitidis FAM18		42	41
No Yes	Neisseria meningitidis MC58		39	39
No Yes	Neisseria gonorrhoeae NCCP11945		51	51
No Yes	Ralstonia eutropha H16		52	52
No Yes	Ralstonia pickettii 12D		44	44
No Yes	Polynucleobacter necessarius ssp. necessarius STIR1		23	23
No Yes	Burkholderia sp. CCGE1002		59	59
No Yes	Burkholderia pseudomallei MSHR346		50	50
No Yes	Burkholderia pseudomallei 1106a		82	82
No Yes	Burkholderia pseudomallei 668		84	84
No Yes	Burkholderia pseudomallei 1710b		81	81
No Yes	Burkholderia mallei NCTC 10229		61	61
No Yes	Burkholderia mallei NCTC 10247		63	63
No Yes	Burkholderia mallei SAVP1		59	59
No Yes	Burkholderia ambifaria MC40-6		60	60
No Yes	Burkholderia cenocepacia MC0-3		69	68
No Yes	Burkholderia cenocepacia HI2424		67	66
No Yes	Burkholderia cenocepacia J2315		64	64
No Yes	Burkholderia multivorans ATCC 17616		60	60
No Yes	Caulobacter crescentus NA1000		57	56
No Yes	Zymomonas mobilis ssp. mobilis NCIMB 11163		24	24
No Yes	Rhodobacter sphaeroides KD131		53	53
No Yes	Rhodobacter sphaeroides ATCC 17025		37	37
No Yes	Rhodobacter sphaeroides ATCC 17029		51	51
No Yes	Gluconacetobacter diazotrophicus PAl 5		48	47
No Yes	Ehrlichia ruminantium Gardel		12	12
No Yes	Ehrlichia ruminantium Welgevonden		12	12
No Yes	Anaplasma marginale Florida		13	13
No Yes	Orientia tsutsugamushi Ikeda		31	31
No Yes	Rickettsia bellii OSU 85-389		29	28
No Yes	Rickettsia rickettsii Iowa		20	19
No Yes	Methylobacterium extorquens DM4		66	66
No Yes	Methylobacterium extorquens AM1		65	65
No Yes	Brucella suis ATCC 23445		36	36
No Yes	Brucella melitensis ATCC 23457		33	33
No Yes	Brucella abortus S19		35	35
No Yes	Brucella melitensis biov. Abortus 2308		36	36
No Yes	Rhizobium etli CIAT 652		64	63
No Yes	Rhizobium leguminosarum bv. trifolii WSM2304		69	68
No Yes	Rhizobium leguminosarum bv. trifolii WSM1325		68	68
No Yes	Rhodopseudomonas palustris TIE-1		80	79
No Yes	Rhodopseudomonas palustris HaA2		74	74
No Yes	Rhodopseudomonas palustris BisB5		62	62
No Yes	Rhodopseudomonas palustris BisB18		80	79
No Yes	Rhodopseudomonas palustris BisA53		83	82
No Yes	Bradyrhizobium sp. BTAi1		82	82
No Yes	Acidithiobacillus ferrooxidans ATCC 53993		52	52
No Yes	Haemophilus somnus 2336		39	38
No Yes	Haemophilus influenzae PittGG		32	30
No Yes	Haemophilus influenzae PittEE		32	31
No Yes	Haemophilus influenzae 86-028NP		40	39
No Yes	Actinobacillus pleuropneumoniae ser. 3 JL03		34	33
No Yes	Actinobacillus pleuropneumoniae ser. 7 AP76		37	36
No Yes	Vibrio fischeri MJ11		47	46
No Yes	Vibrio vulnificus CMCP6 (Poor annotation)		52	52
No Yes	Vibrio cholerae M66-2		49	48
No Yes	Vibrio cholerae O395		50	49
No Yes	Vibrio cholerae MJ-1236		55	54
No Yes	Shewanella sp. W3-18-1		62	61
No Yes	Shewanella sp. ANA-3		60	59
No Yes	Shewanella baltica OS223		64	63
No Yes	Shewanella baltica OS185		63	62
No Yes	Shewanella baltica OS195		66	65
No Yes	Shewanella sp. MR-4		60	59
No Yes	Stenotrophomonas maltophilia K279a		57	56
No Yes	Xylella fastidiosa M23		37	36
No Yes	Xylella fastidiosa M12		37	36
No Yes	Xylella fastidiosa Temecula1		35	34
No Yes	Xanthomonas campestris pv. vesicatoria 85-10 (Completed 2005)		60	58
No Yes	Xanthomonas oryzae pv. oryzae PXO99A		54	53
No Yes	Xanthomonas oryzae pv. oryzae MAFF 311018		55	54
No Yes	Xanthomonas campestris pv. campestris B100		61	59
No Yes	Xanthomonas campestris pv. campestris 8004 (Completed 2005)		60	59
No Yes	Thioalkalivibrio sp. K90mix		58	55
No Yes	Coxiella burnetii CbuK_Q154		21	21
No Yes	Coxiella burnetii CbuG_Q212		20	20
No Yes	Coxiella burnetii Dugway 5J108-111		21	21
No Yes	Coxiella burnetii RSA 331		19	19
No Yes	Legionella pneumophila Corby		57	55
No Yes	Legionella pneumophila Paris		57	55
No Yes	Legionella pneumophila Lens		52	50
No Yes	Dickeya dadantii Ech586		51	50
No Yes	Candidatus Blochmannia pennsylvanicus BPEN		8	8
No Yes	Buchnera aphidicola Cc		6	6
No Yes	Buchnera aphidicola Bp		8	8
No Yes	Buchnera aphidicola Tuc7		10	9
No Yes	Buchnera aphidicola 5A		10	9
No Yes	Buchnera aphidicola Sg		10	9
No Yes	Yersinia pseudotuberculosis PB1/+		51	49
No Yes	Yersinia pseudotuberculosis YPIII		50	49
No Yes	Yersinia pseudotuberculosis IP 31758		43	42
No Yes	Yersinia pestis Z176003		43	42
No Yes	Yersinia pestis Pestoides F		46	44
No Yes	Yersinia pestis Nepal516		43	42
No Yes	Yersinia pestis Antiqua		46	44
No Yes	Yersinia pestis Angola		45	43
No Yes	Yersinia pestis biov. Microtus 91001		47	45
No Yes	Yersinia pestis KIM		46	44
No Yes	Shigella flexneri 5 8401		47	46
No Yes	Shigella flexneri 2a 301		47	46
No Yes	Shigella boydii CDC 3083-94		49	48
No Yes	Salmonella enterica ssp. arizonae ser. 62:z4,z23:--		46	45
No Yes	Salmonella enterica ssp. enterica ser. Schwarzengrund CVM19633		44	42
No Yes	Salmonella enterica ssp. enterica ser. Enteritidis P125109		49	47
No Yes	Salmonella enterica ssp. enterica ser. Choleraesuis str. SC-B67		48	45
No Yes	Salmonella enterica ssp. enterica ser. Newport SL254		47	45
No Yes	Salmonella enterica ssp. enterica ser. Dublin CT_02021853		49	47
No Yes	Salmonella enterica ssp. enterica ser. Typhi CT18		52	50
No Yes	Salmonella enterica ssp. enterica ser. Typhi Ty2		52	50
No Yes	Salmonella enterica ssp. enterica ser. Agona SL483		48	46
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi C RKS4594		48	46
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi B SPB7		50	48
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A AKU_12601		48	46
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A ATCC 9150		48	46
No Yes	Salmonella enterica ssp. enterica ser. Heidelberg SL476		48	46
No Yes	Salmonella enterica ssp. enterica ser. Gallinarum 287/91		45	43
No Yes	Klebsiella pneumoniae 342		55	53
No Yes	Klebsiella pneumoniae NTUH-K2044		51	49
No Yes	Escherichia coli ED1a		54	52
No Yes	Escherichia coli IAI39		52	50
No Yes	Escherichia coli UMN026		52	50
No Yes	Escherichia coli 55989		52	50
No Yes	Escherichia coli S88		54	52
No Yes	Escherichia coli IAI1		46	45
No Yes	Escherichia coli BL21		44	43
No Yes	Escherichia coli ATCC 8739		46	45
No Yes	Escherichia coli BL21(DE3)		45	44
No Yes	Escherichia coli SMS-3-5		48	47
No Yes	Escherichia coli SE11		47	46
No Yes	Escherichia coli APEC O1		52	50
No Yes	Escherichia coli O103:H2 12009		50	49
No Yes	Escherichia coli UTI89		53	51
No Yes	Escherichia coli 536		52	50
No Yes	Escherichia coli HS		47	46
No Yes	Escherichia coli E24377A		50	49
No Yes	Escherichia coli O55:H7 CB9615		48	47
No Yes	Escherichia coli O26:H11 11368		48	46
No Yes	Escherichia coli CFT073		52	51
No Yes	Escherichia coli O111:H- 11128		50	49
No Yes	Escherichia coli O127:H6 E2348/69		50	49
No Yes	Escherichia coli O157:H7 EDL933		50	49
No Yes	Escherichia coli O157:H7 TW14359		50	49
No Yes	Escherichia coli O157:H7 EC4115		50	49
No Yes	Escherichia coli O157:H7 Sakai		50	49
No Yes	Escherichia coli BW2952		45	44
No Yes	Escherichia coli K-12 subW3110		47	46
No Yes	Escherichia coli K-12 subDH10B		44	43
No Yes	Escherichia coli B REL606		44	43
No Yes	Erwinia amylovora CFBP1430		51	49
No Yes	Pseudomonas syringae pv. phaseolicola 1448A		64	62
No Yes	Pseudomonas syringae pv. syringae B728a		68	67
No Yes	Pseudomonas putida W619		63	62
No Yes	Pseudomonas putida F1		57	56
No Yes	Pseudomonas putida GB-1		64	62
No Yes	Pseudomonas fluorescens SBW25		62	61
No Yes	Pseudomonas fluorescens Pf0-1		78	76
No Yes	Pseudomonas aeruginosa LESB58		82	81
No Yes	Pseudomonas aeruginosa PA7		80	78
No Yes	Pseudomonas aeruginosa UCBPP-PA14		83	82
No Yes	Acinetobacter baumannii AB307-0294		39	38
No Yes	Acinetobacter baumannii AYE		40	39
No Yes	Acinetobacter baumannii SDF		36	35
No Yes	Acinetobacter baumannii AB0057		39	38
No Yes	Acinetobacter baumannii ACICU		41	40
No Yes	Francisella novicida U112		31	30
No Yes	Francisella tularensis ssp. mediasiatica FSC147		27	26
No Yes	Francisella tularensis ssp. holarctica FTNF002-00		27	26
No Yes	Francisella tularensis ssp. holarctica OSU18		27	26
No Yes	Francisella tularensis ssp. holarctica		30	29
No Yes	Francisella tularensis ssp. tularensis WY96-3418		29	28
No Yes	Francisella tularensis ssp. tularensis FSC198		29	28
No Yes	Prochlorococcus marinus NATL1A		30	30
No Yes	Prochlorococcus marinus MIT 9301		26	26
No Yes	Prochlorococcus marinus MIT 9515		34	34
No Yes	Prochlorococcus marinus AS9601		31	31
No Yes	Prochlorococcus marinus ssp. marinus CCMP1375		31	31
No Yes	Prochlorococcus marinus ssp. pastoris CCMP1986		31	31
No Yes	Prochlorococcus marinus MIT 9215		31	31
No Yes	Prochlorococcus marinus MIT 9211		24	24
No Yes	Prochlorococcus marinus MIT 9312		30	30
No Yes	Prochlorococcus marinus MIT 9303		39	39
No Yes	Prochlorococcus marinus NATL2A		28	28
No Yes	Cyanothece sp. PCC 8802		81	79
No Yes	Cyanothece sp. PCC 7425		109	106
No Yes	Cyanothece sp. PCC 7424		85	83
No Yes	Cyanothece sp. PCC 8801		76	74
No Yes	Synechococcus sp. JA-2-3Ba(2-13) (Poor annotation)		55	53
No Yes	Synechococcus sp. JA-3-3Ab (Poor annotation)		51	49
No Yes	Synechococcus sp. CC9902 (Poor annotation)		34	34
No Yes	Synechococcus sp. RCC307		37	37
No Yes	Synechococcus sp. CC9605 (Poor annotation)		34	34
No Yes	Synechococcus sp. WH 8102 (Good annotation)		41	41
No Yes	Synechococcus sp. CC9311		34	34
No Yes	Synechococcus sp. WH 7803		39	39
No Yes	Synechococcus sp. PCC 7002		46	46
No Yes	Synechococcus elongatus PCC 7942		48	48
No Yes	Methanococcus maripaludis C6		31	31
No Yes	Methanococcus maripaludis C7		38	38
No Yes	Methanococcus maripaludis C5		35	35
No Yes	Sulfolobus islandicus Y.G.57.14		34	33
No Yes	Sulfolobus islandicus L.S.2.15		33	33
No Yes	Sulfolobus islandicus M.16.27		30	30
No Yes	Sulfolobus islandicus M.14.25		29	29
No Yes	Sulfolobus islandicus M.16.4		35	34
No Yes	Sulfolobus islandicus L.D.8.5		32	32
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	120	116
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		60	60
No Yes	Lotus japonicus (Early assembly)		18	17
No Yes	Prunus persica (Early draft)	Peach	256	235
No Yes	Manihot esculenta (Early draft)	Cassava	341	317
No Yes	Ricinus communis (Early assembly)	Castor bean	308	286
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	299	268
No Yes	Phoenix dactylifera (Early draft)	Date palm	151	143
No Yes	Trypanosoma vivax (Parial)		86	86
No Yes	Trypanosoma congolense (Partial)		102	102
No Yes	Toxoplasma gondii GT1 (Early assembly)		71	67
No Yes	Toxoplasma gondii VEG (Early assembly)		73	68
No Yes	Toxoplasma gondii RH (Archived)		71	67
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	126	122
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	117	113
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	98	93
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	117	115
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	122	119
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	116	113
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	100	95
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	98	95
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	85	78
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	125	122
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	116	114
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	90	87
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	100	96
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	116	113
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	89	85
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	107	105
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	89	88
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	83	82
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	128	125
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	80	79
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	119	116
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	126	122
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	83	82
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	122	119
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	98	96
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	108	105
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	87	86
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	89	86
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	103	101
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	92	89
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	111	107
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	78	77
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	101	98
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	116	112
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	89	85
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	124	121
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	113	111
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	100	97
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	100	96
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	134	129
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	124	119
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	135	131
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	120	116
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	134	129
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	121	119
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		81	79
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		115	113
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	74	72
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	99	97
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	81	78
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	87	85
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	78	76
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	95	93
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	95	93
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	276	251
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	427	396
No Yes	NCBI viral sequences (Viral)		430	424
No Yes	PDB chains (SCOP 1.73) (PDB)		153	153
No Yes	TargetDB (Targets)		5158	5117
No Yes	UniProt 15.0 (UniProt)		75339	73979
No Yes	UniProt 15.0 viral sequences (Viral)		764	755