Nucleotide-diphospho-sugar transferases superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		83935	83935
No Yes	Homo sapiens 49_36k (all transcripts)	Human	163	162
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	128	127
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	76	76
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	86	86
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	127	126
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	158	156
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	78	78
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	77	76
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	60	59
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	132	129
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	156	152
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	65	65
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	76	75
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	88	85
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	68	68
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	79	79
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	68	68
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	67	66
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	115	115
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	50	49
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	77	75
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	119	119
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	67	67
No Yes	Equus caballus 49_2 (all transcripts)	Horse	100	99
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	72	72
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	78	78
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	46	46
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	73	71
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	72	72
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	62	62
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	71	71
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	61	59
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	71	69
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	113	113
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	109	109
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	86	86
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	79	78
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	87	86
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	92	92
No Yes	Xenopus laevis	African clawed frog	176	176
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	123	122
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	132	129
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	136	136
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	114	114
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	116	113
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	203	200
No Yes	Branchiostoma floridae 1.0	Florida lancelet	198	195
No Yes	Ciona savignyi 49_2f (all transcripts)		105	101
No Yes	Ciona intestinalis 49_2i (all transcripts)		108	106
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	168	166
No Yes	Helobdella robusta		68	68
No Yes	Capitella sp. I		128	127
No Yes	Bombyx mori	Domestic silkworm	38	38
No Yes	Nasonia vitripennis	Jewel wasp	30	30
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	96	96
No Yes	Drosophila grimshawi 1.3		45	45
No Yes	Drosophila willistoni 1.3		47	47
No Yes	Drosophila pseudoobscura 2.3		44	44
No Yes	Drosophila persimilis 1.3		43	43
No Yes	Drosophila yakuba 1.3		53	52
No Yes	Drosophila simulans 1.3		44	44
No Yes	Drosophila sechellia 1.3		48	48
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	71	70
No Yes	Drosophila erecta 1.3		46	46
No Yes	Drosophila ananassae 1.3		45	45
No Yes	Drosophila virilis 1.2		42	42
No Yes	Drosophila mojavensis 1.3		45	45
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	64	63
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	46	46
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	46	46
No Yes	Tribolium castaneum 3.0	Red flour beetle	42	42
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	42	41
No Yes	Acyrthosiphon pisum	Pea aphid	39	39
No Yes	Daphnia pulex	Common water flea	63	62
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	73	72
No Yes	Lottia gigantea		98	97
No Yes	Pristionchus pacificus		55	55
No Yes	Meloidogyne incognita	Southern root-knot nematode	43	43
No Yes	Meloidogyne hapla		43	42
No Yes	Brugia malayi	Agent of lymphatic filariasis	22	22
No Yes	Caenorhabditis japonica		50	50
No Yes	Caenorhabditis brenneri		41	41
No Yes	Caenorhabditis remanei		60	60
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	99	99
No Yes	Caenorhabditis briggsae 2		48	48
No Yes	Schistosoma mansoni		48	48
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	85	84
No Yes	Hydra magnipapillata		65	63
No Yes	Trichoplax adhaerens		52	51
No Yes	Proterospongia sp. ATCC 50818		55	54
No Yes	Monosiga brevicollis		58	58
No Yes	Capsaspora owczarzaki ATCC 30864		44	43
No Yes	Malassezia globosa CBS 7966		18	18
No Yes	Ustilago maydis		31	31
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		29	29
No Yes	Melampsora laricis-populina		31	31
No Yes	Sporobolomyces roseus IAM 13481		32	32
No Yes	Serpula lacrymans var. lacrymans S7.9		28	28
No Yes	Coprinopsis cinerea okayama7 130		33	33
No Yes	Pleurotus ostreatus	Oyster mushroom	37	37
No Yes	Laccaria bicolor S238N-H82		38	38
No Yes	Agaricus bisporus var. bisporus		26	26
No Yes	Schizophyllum commune		33	33
No Yes	Heterobasidion annosum		30	30
No Yes	Phanerochaete chrysosporium RP-78 2.1		35	35
No Yes	Postia placenta		59	58
No Yes	Tremella mesenterica		28	28
No Yes	Cryptococcus neoformans JEC21		18	18
No Yes	Magnaporthe grisea 70-15		37	37
No Yes	Podospora anserina		38	38
No Yes	Sporotrichum thermophile ATCC 42464		36	36
No Yes	Thielavia terrestris NRRL 8126		38	38
No Yes	Chaetomium globosum CBS 148.51		38	38
No Yes	Neurospora tetrasperma		36	36
No Yes	Neurospora discreta FGSC 8579		35	35
No Yes	Neurospora crassa OR74A		35	35
No Yes	Cryphonectria parasitica	Chestnut blight fungus	37	37
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		61	61
No Yes	Nectria haematococca mpVI		59	59
No Yes	Fusarium verticillioides 7600		56	56
No Yes	Fusarium graminearum		49	49
No Yes	Trichoderma atroviride		39	39
No Yes	Trichoderma reesei 1.2		38	38
No Yes	Trichoderma virens Gv29-8		39	39
No Yes	Verticillium dahliae VdLs.17		45	45
No Yes	Verticillium albo-atrum VaMs.102		39	39
No Yes	Botrytis cinerea B05.10		43	43
No Yes	Sclerotinia sclerotiorum		41	41
No Yes	Alternaria brassicicola		37	37
No Yes	Pyrenophora tritici-repentis		45	45
No Yes	Cochliobolus heterostrophus		43	43
No Yes	Stagonospora nodorum		46	46
No Yes	Mycosphaerella fijiensis CIRAD86		44	44
No Yes	Mycosphaerella graminicola IPO323		40	40
No Yes	Ajellomyces dermatitidis SLH14081		32	32
No Yes	Histoplasma capsulatum class NAmI strain WU24		31	31
No Yes	Microsporum gypseum		29	29
No Yes	Arthroderma benhamiae CBS 112371		27	27
No Yes	Microsporum canis CBS 113480		29	29
No Yes	Trichophyton equinum CBS 127.97		28	28
No Yes	Trichophyton verrucosum HKI 0517		28	28
No Yes	Trichophyton tonsurans CBS 112818		29	29
No Yes	Trichophyton rubrum CBS 118892		29	29
No Yes	Paracoccidioides brasiliensis Pb18		27	27
No Yes	Coccidioides posadasii RMSCC 3488		32	32
No Yes	Coccidioides immitis RS		35	35
No Yes	Uncinocarpus reesii 1704		29	29
No Yes	Aspergillus fumigatus Af293		38	38
No Yes	Neosartorya fischeri NRRL 181		39	39
No Yes	Penicillium chrysogenum Wisconsin 54-1255		39	39
No Yes	Penicillium marneffei ATCC 18224		48	48
No Yes	Aspergillus carbonarius ITEM 5010		39	39
No Yes	Aspergillus terreus NIH2624		34	34
No Yes	Aspergillus oryzae RIB40		38	38
No Yes	Aspergillus niger ATCC 1015		29	29
No Yes	Aspergillus flavus NRRL3357		43	43
No Yes	Aspergillus clavatus NRRL 1		38	38
No Yes	Aspergillus nidulans FGSC A4		36	36
No Yes	Tuber melanosporum Vittad	Perigord truffle	31	31
No Yes	Candida dubliniensis CD36		36	36
No Yes	Candida tropicalis MYA-3404		38	38
No Yes	Candida parapsilosis		34	34
No Yes	Candida albicans SC5314		38	38
No Yes	Yarrowia lipolytica CLIB122		28	28
No Yes	Candida lusitaniae ATCC 42720		28	28
No Yes	Vanderwaltozyma polyspora DSM 70294		34	34
No Yes	Candida glabrata CBS138		39	39
No Yes	Kluyveromyces thermotolerans CBS 6340		29	29
No Yes	Lachancea kluyveri		32	32
No Yes	Kluyveromyces waltii		30	30
No Yes	Lodderomyces elongisporus NRRL YB-4239		34	34
No Yes	Ashbya gossypii ATCC 10895		28	28
No Yes	Debaromyces hansenii		36	36
No Yes	Zygosaccharomyces rouxii		27	27
No Yes	Saccharomyces mikatae MIT		32	32
No Yes	Saccharomyces paradoxus MIT		34	34
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	33	33
No Yes	Saccharomyces bayanus MIT		34	34
No Yes	Candida guilliermondii ATCC 6260		38	38
No Yes	Pichia stipitis CBS 6054		39	39
No Yes	Pichia pastoris GS115		28	28
No Yes	Kluyveromyces lactis		29	29
No Yes	Schizosaccharomyces octosporus yFS286		23	23
No Yes	Schizosaccharomyces japonicus yFS275		22	22
No Yes	Schizosaccharomyces pombe	Fission yeast	25	25
No Yes	Allomyces macrogynus ATCC 38327		84	84
No Yes	Rhizopus oryzae RA 99-880		80	80
No Yes	Phycomyces blakesleeanus		65	64
No Yes	Mucor circinelloides		82	81
No Yes	Encephalitozoon intestinalis		8	8
No Yes	Encephalitozoon cuniculi		8	8
No Yes	Spizellomyces punctatus DAOM BR117		54	54
No Yes	Batrachochytrium dendrobatidis JEL423		42	41
No Yes	Dictyostelium discoideum		27	27
No Yes	Dictyostelium purpureum		24	24
No Yes	Entamoeba dispar		10	10
No Yes	Entamoeba invadens		14	14
No Yes	Entamoeba histolytica 1		11	11
No Yes	Arabidopsis lyrata	Lyrate rockcress	135	134
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	149	148
No Yes	Carica papaya	Papaya	95	95
No Yes	Medicago truncatula	Barrel medic	95	95
No Yes	Glycine max	Soybean	242	242
No Yes	Cucumis sativus	Cucumber	178	178
No Yes	Populus trichocarpa 1.1	Black cottonwood	189	189
No Yes	Vitis vinifera	Wine grape	150	149
No Yes	Brachypodium distachyon		143	143
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	182	181
No Yes	Zea mays subsp. mays	Maize	280	279
No Yes	Sorghum bicolor	Sorghum	135	133
No Yes	Selaginella moellendorffii		140	136
No Yes	Physcomitrella patens subsp. patens		121	121
No Yes	Coccomyxa sp. C-169		47	46
No Yes	Chlorella sp. NC64A		52	52
No Yes	Chlorella vulgaris		47	47
No Yes	Volvox carteri f. nagariensis		57	56
No Yes	Chlamydomonas reinhardtii 4.0		46	46
No Yes	Ostreococcus sp. RCC809		29	29
No Yes	Ostreococcus lucimarinus CCE9901		30	30
No Yes	Ostreococcus tauri		23	23
No Yes	Micromonas sp. RCC299		34	34
No Yes	Micromonas pusilla CCMP1545		30	30
No Yes	Cyanidioschyzon merolae		28	27
No Yes	Giardia lamblia		9	9
No Yes	Trypanosoma cruzi strain CL Brener		62	62
No Yes	Trypanosoma brucei		9	9
No Yes	Leishmania mexicana		14	14
No Yes	Leishmania major strain Friedlin		16	16
No Yes	Leishmania infantum JPCM5		14	14
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		14	14
No Yes	Aureococcus anophagefferens		78	77
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	60	60
No Yes	Phytophthora sojae 1.1		59	59
No Yes	Phytophthora infestans T30-4		69	69
No Yes	Phytophthora capsici		66	66
No Yes	Phaeodactylum tricornutum		49	49
No Yes	Fragilariopsis cylindrus		70	68
No Yes	Thalassiosira pseudonana		40	40
No Yes	Paramecium tetraurelia		27	27
No Yes	Tetrahymena thermophila SB210 1		15	15
No Yes	Babesia bovis T2Bo		6	6
No Yes	Theileria parva		6	6
No Yes	Theileria annulata		6	6
No Yes	Plasmodium falciparum 3D7		7	7
No Yes	Plasmodium vivax SaI-1		6	6
No Yes	Plasmodium knowlesi strain H		6	6
No Yes	Plasmodium yoelii ssp. yoelii 1		7	7
No Yes	Plasmodium chabaudi		9	9
No Yes	Plasmodium berghei ANKA		10	10
No Yes	Cryptosporidium hominis		14	14
No Yes	Cryptosporidium muris		14	14
No Yes	Cryptosporidium parvum Iowa II		15	15
No Yes	Neospora caninum Nc-Liverpool		17	17
No Yes	Neospora caninum		15	15
No Yes	Toxoplasma gondii ME49		17	17
No Yes	Naegleria gruberi		29	29
No Yes	Trichomonas vaginalis		74	74
No Yes	Emiliania huxleyi CCMP1516		207	203
No Yes	Acholeplasma laidlawii PG-8A		3	3
No Yes	Mesoplasma florum L1		1	1
No Yes	Ureaplasma parvum ser. 3 ATCC 700970		1	1
No Yes	Ureaplasma urealyticum ser. 10 ATCC 33699		1	1
No Yes	Mycoplasma mycoides ssp. mycoides SC PG1		12	12
No Yes	Mycoplasma capricolum ssp. capricolum ATCC 27343		3	3
No Yes	Mycoplasma crocodyli MP145		5	5
No Yes	Mycoplasma conjunctivae		2	2
No Yes	Mycoplasma penetrans HF-2		6	6
No Yes	Mycoplasma mobile 163K		8	8
No Yes	Mycoplasma arthritidis 158L3-1		1	1
No Yes	Mycoplasma agalactiae PG2		4	4
No Yes	Mycoplasma synoviae 53		1	1
No Yes	Mycoplasma pulmonis UAB CTIP		1	1
No Yes	Mycoplasma pneumoniae M129		5	5
No Yes	Mycoplasma hominis		1	1
No Yes	Mycoplasma genitalium G37		4	4
No Yes	Mycoplasma gallisepticum R		4	4
No Yes	Aminobacterium colombiense DSM 12261		8	8
No Yes	Thermanaerovibrio acidaminovorans DSM 6589		15	15
No Yes	Brachyspira hyodysenteriae WA1		30	29
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis L550		36	34
No Yes	Leptospira interrogans ser. Lai 56601		34	33
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Paris)		32	31
No Yes	Treponema pallidum ssp. pallidum Nichols		3	3
No Yes	Treponema denticola ATCC 35405		16	16
No Yes	Borrelia garinii PBi		4	4
No Yes	Borrelia afzelii PKo		4	4
No Yes	Borrelia burgdorferi B31		4	4
No Yes	Borrelia recurrentis A1		4	4
No Yes	Borrelia duttonii Ly		4	4
No Yes	Borrelia turicatae 91E135		4	4
No Yes	Borrelia hermsii DAH		4	4
No Yes	Rhodopirellula baltica SH 1		36	36
No Yes	Pirellula staleyi DSM 6068		40	40
No Yes	Gardnerella vaginalis 409-05		8	8
No Yes	Bifidobacterium longum NCC2705		18	18
No Yes	Bifidobacterium animalis ssp. lactis AD011		20	20
No Yes	Bifidobacterium dentium Bd1		30	30
No Yes	Bifidobacterium adolescentis ATCC 15703		15	15
No Yes	Kineococcus radiotolerans SRS30216		35	35
No Yes	Catenulispora acidiphila DSM 44928		47	47
No Yes	Stackebrandtia nassauensis DSM 44728		18	18
No Yes	Acidothermus cellulolyticus 11B		26	24
No Yes	Nakamurella multipartita DSM 44233		37	37
No Yes	Geodermatophilus obscurus DSM 43160		54	54
No Yes	Frankia sp. CcI3		47	47
No Yes	Frankia alni ACN14a		47	47
No Yes	Thermobifida fusca YX		23	23
No Yes	Thermomonospora curvata DSM 43183		34	34
No Yes	Streptosporangium roseum DSM 43021		57	57
No Yes	Streptomyces griseus ssp. griseus NBRC 13350		42	42
No Yes	Streptomyces avermitilis MA-4680		43	42
No Yes	Streptomyces scabiei 87.22		45	45
No Yes	Streptomyces coelicolor A3(2)		43	43
No Yes	Actinosynnema mirum DSM 43827		37	37
No Yes	Saccharomonospora viridis DSM 43017		23	23
No Yes	Saccharopolyspora erythraea NRRL 2338		30	30
No Yes	Kribbella flavida DSM 17836		29	29
No Yes	Nocardioides sp. JS614		28	28
No Yes	Propionibacterium acnes KPA171202		10	10
No Yes	Salinispora arenicola CNS-205		29	29
No Yes	Salinispora tropica CNB-440		25	25
No Yes	Gordonia bronchialis DSM 43247		28	28
No Yes	Rhodococcus jostii RHA1		31	31
No Yes	Rhodococcus opacus B4		29	29
No Yes	Rhodococcus erythropolis PR4		29	29
No Yes	Nocardia farcinica IFM 10152		24	24
No Yes	Mycobacterium abscessus		20	20
No Yes	Mycobacterium sp. MCS		27	27
No Yes	Mycobacterium avium ssp. paratuberculosis K-10		21	21
No Yes	Mycobacterium vanbaalenii PYR-1		28	27
No Yes	Mycobacterium tuberculosis H37Rv		26	26
No Yes	Mycobacterium bovis AF2122/97		23	23
No Yes	Mycobacterium ulcerans Agy99		22	22
No Yes	Mycobacterium gilvum PYR-GCK		25	25
No Yes	Mycobacterium marinum M		27	27
No Yes	Mycobacterium smegmatis MC2 155		25	25
No Yes	Mycobacterium leprae TN		13	13
No Yes	Corynebacterium aurimucosum		15	15
No Yes	Corynebacterium kroppenstedtii DSM 44385		10	10
No Yes	Corynebacterium efficiens YS-314		22	22
No Yes	Corynebacterium urealyticum DSM 7109		10	10
No Yes	Corynebacterium jeikeium K411		10	10
No Yes	Corynebacterium glutamicum ATCC 13032 Kitasato		21	21
No Yes	Corynebacterium diphtheriae NCTC 13129		12	12
No Yes	Tropheryma whipplei Twist		10	10
No Yes	Sanguibacter keddieii DSM 10542		28	28
No Yes	Kytococcus sedentarius DSM 20547		17	17
No Yes	Beutenbergia cavernae DSM 12333		29	28
No Yes	Leifsonia xyli ssp. xyli CTCB07		23	22
No Yes	Clavibacter michiganensis ssp. michiganensis NCPPB 382		26	25
No Yes	Jonesia denitrificans DSM 20603		16	16
No Yes	Brachybacterium faecium DSM 4810		27	26
No Yes	Xylanimonas cellulosilytica DSM 15894		31	31
No Yes	Kocuria rhizophila DC2201		22	22
No Yes	Rothia mucilaginosa DY-18		17	17
No Yes	Arthrobacter sp. FB24		32	31
No Yes	Arthrobacter chlorophenolicus A6		32	31
No Yes	Arthrobacter aurescens TC1		28	28
No Yes	Renibacterium salmoninarum ATCC 33209		14	13
No Yes	Micrococcus luteus NCTC 2665		12	12
No Yes	Cryptobacterium curtum DSM 15641		13	13
No Yes	Eggerthella lenta DSM 2243		30	28
No Yes	Slackia heliotrinireducens DSM 20476		19	19
No Yes	Atopobium parvulum DSM 20469		18	17
No Yes	Conexibacter woesei DSM 14684		37	36
No Yes	Rubrobacter xylanophilus DSM 9941		30	29
No Yes	Acidimicrobium ferrooxidans DSM 10331		21	20
No Yes	Denitrovibrio acetiphilus DSM 12809		20	20
No Yes	Deferribacter desulfuricans SSM1		15	15
No Yes	Kosmotoga olearia TBF 19.5.1		14	14
No Yes	Petrotoga mobilis SJ95		14	14
No Yes	Fervidobacterium nodosum Rt17-B1		11	11
No Yes	Thermosipho melanesiensis BI429		14	14
No Yes	Thermosipho africanus TCF52B		16	16
No Yes	Thermotoga lettingae TMO		12	11
No Yes	Thermotoga sp. RQ2		13	13
No Yes	Thermotoga naphthophila RKU-10		12	12
No Yes	Thermotoga petrophila RKU-1		11	11
No Yes	Thermotoga neapolitana DSM 4359		15	15
No Yes	Thermotoga maritima MSB8		10	10
No Yes	Dehalococcoides sp. CBDB1		6	6
No Yes	Dehalococcoides ethenogenes 195		11	11
No Yes	Thermomicrobium roseum DSM 5159		17	16
No Yes	Sphaerobacter thermophilus DSM 20745		27	26
No Yes	Herpetosiphon aurantiacus ATCC 23779		36	36
No Yes	Roseiflexus sp. RS-1		54	54
No Yes	Roseiflexus castenholzii DSM 13941		58	58
No Yes	Chloroflexus sp. Y-400-fl		51	50
No Yes	Chloroflexus aggregans DSM 9485		49	49
No Yes	Chloroflexus aurantiacus J-10-fl		51	50
No Yes	Sulfurihydrogenibium sp. YO3AOP1		20	18
No Yes	Sulfurihydrogenibium azorense Az-Fu1		22	20
No Yes	Persephonella marina EX-H1		17	17
No Yes	Hydrogenobaculum sp. Y04AAS1		18	17
No Yes	Thermocrinis albus DSM 14484		12	12
No Yes	Aquifex aeolicus VF5		12	12
No Yes	Hydrogenobacter thermophilus TK-6		12	12
No Yes	Gemmatimonas aurantiaca T-27		21	21
No Yes	Fibrobacter succinogenes ssp. succinogenes S85		41	41
No Yes	Candidatus Koribacter versatilis Ellin345		29	29
No Yes	Candidatus Solibacter usitatus Ellin6076		72	72
No Yes	Acidobacterium capsulatum ATCC 51196		36	36
No Yes	Elusimicrobium minutum Pei191		9	9
No Yes	uncultured Termite group 1 bacterium phylotype Rs-D17		2	2
No Yes	Pelodictyon phaeoclathratiforme BU-1		33	33
No Yes	Pelodictyon luteolum DSM 273		32	32
No Yes	Chlorobium chlorochromatii CaD3		26	26
No Yes	Chlorobium phaeobacteroides DSM 266		33	31
No Yes	Chlorobium phaeovibrioides DSM 265		28	28
No Yes	Chlorobium limicola DSM 245		25	25
No Yes	Chlorobaculum parvum NCIB 8327		26	25
No Yes	Chlorobium tepidum TLS		22	22
No Yes	Chloroherpeton thalassium ATCC 35110		36	36
No Yes	Prosthecochloris aestuarii DSM 271		25	25
No Yes	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2		8	8
No Yes	Prevotella ruminicola 23		47	47
No Yes	Parabacteroides distasonis ATCC 8503		58	58
No Yes	Porphyromonas gingivalis W83		17	17
No Yes	Bacteroides vulgatus ATCC 8482		55	55
No Yes	Bacteroides thetaiotaomicron VPI-5482		56	55
No Yes	Bacteroides fragilis NCTC 9343		65	64
No Yes	Candidatus Amoebophilus asiaticus 5a2		5	5
No Yes	Salinibacter ruber DSM 13855		19	19
No Yes	Rhodothermus marinus DSM 4252		23	23
No Yes	Chitinophaga pinensis DSM 2588		40	40
No Yes	Dyadobacter fermentans DSM 18053		64	64
No Yes	Cytophaga hutchinsonii ATCC 33406		38	38
No Yes	Spirosoma linguale DSM 74		73	73
No Yes	Pedobacter heparinus DSM 2366		35	35
No Yes	Zunongwangia profunda SM-A87		35	35
No Yes	Gramella forsetii KT0803		36	36
No Yes	Robiginitalea biformata HTCC2501		28	28
No Yes	Flavobacteriaceae bacterium 3519-10		36	36
No Yes	Capnocytophaga ochracea DSM 7271		17	17
No Yes	Flavobacterium psychrophilum JIP02/86		31	31
No Yes	Flavobacterium johnsoniae UW101		42	42
No Yes	Blattabacterium sp. Bge		1	1
No Yes	Dictyoglomus turgidum DSM 6724		11	11
No Yes	Dictyoglomus thermophilum H-6-12		16	16
No Yes	Candidatus Protochlamydia amoebophila UWE25		24	23
No Yes	Chlamydophila pneumoniae TW-183		4	4
No Yes	Chlamydophila caviae GPIC		4	4
No Yes	Chlamydophila felis Fe/C-56		4	4
No Yes	Chlamydophila abortus S26/3		4	4
No Yes	Chlamydia muridarum Nigg		4	4
No Yes	Chlamydia trachomatis D/UW-3/CX		4	4
No Yes	Coraliomargarita akajimensis DSM 45221		28	27
No Yes	Opitutus terrae PB90-1		53	51
No Yes	Methylacidiphilum infernorum V4		29	28
No Yes	Akkermansia muciniphila ATCC BAA-835		27	27
No Yes	Thermodesulfovibrio yellowstonii DSM 11347		16	16
No Yes	Streptobacillus moniliformis DSM 12112		3	3
No Yes	Sebaldella termitidis ATCC 33386		18	18
No Yes	Leptotrichia buccalis DSM 1135		19	18
No Yes	Fusobacterium nucleatum ssp. nucleatum ATCC 25586		16	16
No Yes	Thermobaculum terrenum ATCC BAA-798		20	20
No Yes	Deinococcus deserti VCD115		12	12
No Yes	Deinococcus geothermalis DSM 11300		15	15
No Yes	Deinococcus radiodurans R1		17	17
No Yes	Meiothermus ruber DSM 1279		20	20
No Yes	Thermus thermophilus HB27 (First sequenced)		12	12
No Yes	Natranaerobius thermophilus JW/NM-WN-LF		15	15
No Yes	Symbiobacterium thermophilum IAM 14863		19	19
No Yes	Anaerococcus prevotii DSM 20548		10	10
No Yes	Finegoldia magna ATCC 29328		9	9
No Yes	Clostridiales genomosp. BVAB3 UPII9-5		12	11
No Yes	Anaerocellum thermophilum DSM 6725		21	21
No Yes	Candidatus Desulforudis audaxviator MP104C		15	15
No Yes	Pelotomaculum thermopropionicum SI		27	25
No Yes	Desulfitobacterium hafniense Y51		29	28
No Yes	Desulfotomaculum reducens MI-1		35	32
No Yes	Desulfotomaculum acetoxidans DSM 771		27	27
No Yes	Eubacterium rectale ATCC 33656		25	24
No Yes	Eubacterium eligens ATCC 27750		28	26
No Yes	Syntrophomonas wolfei ssp. wolfei Goettingen		19	19
No Yes	Heliobacterium modesticaldum Ice1		18	18
No Yes	Alkaliphilus oremlandii OhILAs		13	13
No Yes	Alkaliphilus metalliredigens QYMF		17	17
No Yes	Clostridium phytofermentans ISDg		20	20
No Yes	Clostridium novyi NT		14	14
No Yes	Clostridium kluyveri DSM 555		25	24
No Yes	Clostridium cellulolyticum H10		17	17
No Yes	Clostridium beijerinckii NCIMB 8052		34	32
No Yes	Clostridium thermocellum ATCC 27405		23	23
No Yes	Clostridium tetani E88		11	11
No Yes	Clostridium perfringens 13		22	22
No Yes	Clostridium difficile 630		21	21
No Yes	Clostridium botulinum A ATCC 3502		25	24
No Yes	Clostridium acetobutylicum ATCC 824		49	49
No Yes	Veillonella parvula DSM 2008		12	12
No Yes	Acidaminococcus fermentans DSM 20731		20	20
No Yes	Caldicellulosiruptor saccharolyticus DSM 8903		18	18
No Yes	Coprothermobacter proteolyticus DSM 5265		15	15
No Yes	Carboxydothermus hydrogenoformans Z-2901		16	16
No Yes	Moorella thermoacetica ATCC 39073		17	17
No Yes	Ammonifex degensii KC4		19	17
No Yes	Thermoanaerobacter pseudethanolicus ATCC 33223		13	13
No Yes	Thermoanaerobacter sp. X514		9	9
No Yes	Thermoanaerobacter tengcongensis MB4		10	9
No Yes	Thermoanaerobacter italicus Ab9		15	15
No Yes	Halothermothrix orenii H 168		16	16
No Yes	Enterococcus faecalis V583		25	22
No Yes	Oenococcus oeni PSU-1		15	15
No Yes	Leuconostoc citreum KM20		14	14
No Yes	Leuconostoc mesenteroides ssp. mesenteroides ATCC 8293		11	11
No Yes	Lactobacillus casei ATCC 334		16	16
No Yes	Lactobacillus crispatus ST1		12	12
No Yes	Lactobacillus rhamnosus GG		19	19
No Yes	Lactobacillus johnsonii NCC 533		16	16
No Yes	Lactobacillus salivarius UCC118		14	14
No Yes	Lactobacillus fermentum IFO 3956		12	12
No Yes	Lactobacillus sakei ssp. sakei 23K		11	9
No Yes	Lactobacillus reuteri DSM 20016		8	8
No Yes	Lactobacillus gasseri ATCC 33323		12	12
No Yes	Lactobacillus plantarum WCFS1		20	20
No Yes	Lactobacillus helveticus DPC 4571		9	9
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842		9	9
No Yes	Lactobacillus brevis ATCC 367		6	6
No Yes	Lactobacillus acidophilus NCFM		16	16
No Yes	Pediococcus pentosaceus ATCC 25745		12	11
No Yes	Lactococcus lactis ssp. lactis Il1403		17	17
No Yes	Streptococcus gallolyticus UCN34		13	13
No Yes	Streptococcus equi ssp. zooepidemicus MGCS10565		13	13
No Yes	Streptococcus dysgalactiae ssp. equisimilis GGS_124		11	11
No Yes	Streptococcus mitis B6		17	16
No Yes	Streptococcus uberis 0140J		9	9
No Yes	Streptococcus pyogenes M1 GAS		10	10
No Yes	Streptococcus pneumoniae TIGR4 (Virulent)		18	17
No Yes	Streptococcus agalactiae NEM316		24	24
No Yes	Streptococcus mutans UA159		12	12
No Yes	Streptococcus thermophilus LMG 18311 (Older strain)		11	10
No Yes	Streptococcus suis 05ZYH33		18	18
No Yes	Streptococcus sanguinis SK36		21	20
No Yes	Streptococcus gordonii Challis subCH1		15	15
No Yes	Exiguobacterium sp. AT1b		17	17
No Yes	Exiguobacterium sibiricum 255-15		12	12
No Yes	Bacillus tusciae DSM 2912		27	26
No Yes	Alicyclobacillus acidocaldarius ssp. acidocaldarius DSM 446		18	18
No Yes	Brevibacillus brevis NBRC 100599		32	30
No Yes	Paenibacillus sp. JDR-2		44	44
No Yes	Listeria welshimeri ser. 6b SLCC5334		11	11
No Yes	Listeria innocua Clip11262		11	11
No Yes	Listeria seeligeri ser. 1/2b SLCC3954		14	14
No Yes	Listeria monocytogenes EGD-e		14	14
No Yes	Lysinibacillus sphaericus C3-41		13	13
No Yes	Oceanobacillus iheyensis HTE831		16	16
No Yes	Anoxybacillus flavithermus WK1		14	14
No Yes	Geobacillus sp. WCH70		11	11
No Yes	Geobacillus thermodenitrificans NG80-2		15	15
No Yes	Geobacillus kaustophilus HTA426		21	21
No Yes	Bacillus subtilis ssp. subtilis 168		30	30
No Yes	Bacillus licheniformis ATCC 14580		20	20
No Yes	Bacillus amyloliquefaciens FZB42		27	27
No Yes	Bacillus halodurans C-125		21	21
No Yes	Bacillus weihenstephanensis KBAB4		25	23
No Yes	Bacillus thuringiensis ser. konkukian 97-27		32	26
No Yes	Bacillus cereus ATCC 14579		38	32
No Yes	Bacillus anthracis Ames Ancestor		33	27
No Yes	Bacillus pseudofirmus OF4		12	12
No Yes	Bacillus clausii KSM-K16		25	24
No Yes	Bacillus pumilus SAFR-032		27	27
No Yes	Bacillus megaterium QM B1551		28	26
No Yes	Macrococcus caseolyticus JCSC5402		12	12
No Yes	Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305		14	14
No Yes	Staphylococcus lugdunensis HKU09-01		12	12
No Yes	Staphylococcus haemolyticus JCSC1435		9	9
No Yes	Staphylococcus epidermidis RP62A		9	9
No Yes	Staphylococcus carnosus ssp. carnosus TM300		12	12
No Yes	Staphylococcus aureus ssp. aureus NCTC 8325		12	11
No Yes	Nautilia profundicola AmH		9	9
No Yes	Sulfurospirillum deleyianum DSM 6946		19	19
No Yes	Arcobacter butzleri RM4018		11	11
No Yes	Campylobacter hominis ATCC BAA-381		9	9
No Yes	Campylobacter lari RM2100		22	21
No Yes	Campylobacter curvus 525.92		15	15
No Yes	Campylobacter concisus 13826		10	10
No Yes	Campylobacter jejuni ssp. jejuni NCTC 11168		22	21
No Yes	Campylobacter fetus ssp. fetus 82-40		11	11
No Yes	Sulfurimonas denitrificans DSM 1251		13	13
No Yes	Wolinella succinogenes DSM 1740		10	10
No Yes	Helicobacter hepaticus ATCC 51449		19	18
No Yes	Helicobacter mustelae 12198		20	20
No Yes	Helicobacter acinonychis Sheeba		13	13
No Yes	Helicobacter pylori 26695		12	12
No Yes	Nitratiruptor sp. SB155-2		12	12
No Yes	Sulfurovum sp. NBC37-1		22	19
No Yes	Bdellovibrio bacteriovorus HD100		12	12
No Yes	Syntrophus aciditrophicus SB		31	30
No Yes	Syntrophobacter fumaroxidans MPOB		33	33
No Yes	Desulfotalea psychrophila LSv54		17	17
No Yes	Desulfatibacillum alkenivorans AK-01		34	32
No Yes	Desulfobacterium autotrophicum HRM2		33	32
No Yes	Desulfococcus oleovorans Hxd3		36	36
No Yes	Desulfohalobium retbaense DSM 5692		20	20
No Yes	Desulfomicrobium baculatum DSM 4028		44	43
No Yes	Lawsonia intracellularis PHE/MN1-00		10	10
No Yes	Desulfovibrio magneticus RS-1		52	52
No Yes	Desulfovibrio vulgaris Hildenborough		37	37
No Yes	Desulfovibrio salexigens DSM 2638		39	37
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans G20		48	46
No Yes	Pelobacter propionicus DSM 2379		41	37
No Yes	Pelobacter carbinolicus DSM 2380		30	30
No Yes	Geobacter uraniireducens Rf4		58	57
No Yes	Geobacter sp. FRC-32		48	45
No Yes	Geobacter lovleyi SZ		44	37
No Yes	Geobacter bemidjiensis Bem		54	50
No Yes	Geobacter sulfurreducens PCA		36	34
No Yes	Geobacter metallireducens GS-15		41	41
No Yes	Haliangium ochraceum DSM 14365		29	29
No Yes	Sorangium cellulosum So ce 56		38	36
No Yes	Anaeromyxobacter sp. Fw109-5		33	33
No Yes	Anaeromyxobacter dehalogenans 2CP-C		36	36
No Yes	Myxococcus xanthus DK 1622		34	33
No Yes	Magnetococcus sp. MC-1		33	33
No Yes	Sideroxydans lithotrophicus ES-1		21	21
No Yes	Aromatoleum aromaticum EbN1		24	24
No Yes	Dechloromonas aromatica RCB		20	20
No Yes	Thauera sp. MZ1T		27	26
No Yes	Laribacter hongkongensis HLHK9		19	19
No Yes	Chromobacterium violaceum ATCC 12472		20	19
No Yes	Neisseria meningitidis Z2491		12	12
No Yes	Neisseria gonorrhoeae FA 1090		11	11
No Yes	Methylotenera mobilis JLW8		22	21
No Yes	Methylovorus sp. SIP3-4		23	23
No Yes	Methylobacillus flagellatus KT		18	16
No Yes	Thiobacillus denitrificans ATCC 25259		25	24
No Yes	Candidatus Accumulibacter phosphatis clade IIA UW-1		25	25
No Yes	Methylibium petroleiphilum PM1		22	22
No Yes	Leptothrix cholodnii SP-6		23	23
No Yes	Ralstonia eutropha JMP134		28	28
No Yes	Cupriavidus taiwanensis		29	29
No Yes	Ralstonia metallidurans CH34		23	23
No Yes	Ralstonia pickettii 12J		29	29
No Yes	Ralstonia solanacearum GMI1000		15	15
No Yes	Polynucleobacter necessarius ssp. asymbioticus QLW-P1DMWA-1		19	19
No Yes	Burkholderia phytofirmans PsJN		41	41
No Yes	Burkholderia phymatum STM815		46	45
No Yes	Burkholderia thailandensis E264		39	38
No Yes	Burkholderia pseudomallei K96243		41	40
No Yes	Burkholderia mallei ATCC 23344		29	29
No Yes	Burkholderia sp. 383		38	38
No Yes	Burkholderia ambifaria AMMD		38	38
No Yes	Burkholderia cenocepacia AU 1054		38	37
No Yes	Burkholderia multivorans ATCC 17616		30	30
No Yes	Burkholderia vietnamiensis G4		41	41
No Yes	Burkholderia xenovorans LB400		47	47
No Yes	Burkholderia glumae BGR1		37	36
No Yes	Verminephrobacter eiseniae EF01-2		16	16
No Yes	Delftia acidovorans SPH-1		16	16
No Yes	Polaromonas sp. JS666		20	20
No Yes	Polaromonas naphthalenivorans CJ2		21	21
No Yes	Variovorax paradoxus S110		32	30
No Yes	Rhodoferax ferrireducens T118		21	21
No Yes	Diaphorobacter sp. TPSY		13	13
No Yes	Acidovorax sp. JS42		18	17
No Yes	Acidovorax citrulli AAC00-1		23	22
No Yes	Comamonas sp. CNB-1		20	19
No Yes	Herminiimonas arsenicoxydans		24	24
No Yes	Janthinobacterium sp. Marseille		24	24
No Yes	Bordetella petrii DSM 12804		18	18
No Yes	Bordetella avium 197N		19	19
No Yes	Bordetella pertussis Tohama I		12	12
No Yes	Bordetella parapertussis 12822		12	12
No Yes	Bordetella bronchiseptica RB50		12	12
No Yes	Nitrosospira multiformis ATCC 25196		25	25
No Yes	Nitrosomonas eutropha C91		22	22
No Yes	Nitrosomonas europaea ATCC 19718		23	23
No Yes	Caulobacter sp. K31		30	30
No Yes	Caulobacter crescentus CB15		22	22
No Yes	Caulobacter segnis ATCC 21756		27	27
No Yes	Phenylobacterium zucineum HLK1		31	31
No Yes	Erythrobacter litoralis HTCC2594		15	15
No Yes	Sphingopyxis alaskensis RB2256		14	14
No Yes	Novosphingobium aromaticivorans DSM 12444		20	19
No Yes	Sphingobium japonicum UT26S		30	30
No Yes	Sphingomonas wittichii RW1		33	33
No Yes	Zymomonas mobilis ssp. mobilis ZM4		20	20
No Yes	Maricaulis maris MCS10		25	24
No Yes	Hirschia baltica ATCC 49814		29	29
No Yes	Hyphomonas neptunium ATCC 15444		22	22
No Yes	Dinoroseobacter shibae DFL 12		19	19
No Yes	Jannaschia sp. CCS1		20	20
No Yes	Ruegeria sp. TM1040		23	23
No Yes	Ruegeria pomeroyi DSS-3		19	19
No Yes	Roseobacter denitrificans OCh 114		20	20
No Yes	Rhodobacter sphaeroides 2.4.1		27	27
No Yes	Rhodobacter capsulatus SB1003		27	27
No Yes	Paracoccus denitrificans PD1222		21	21
No Yes	Magnetospirillum magneticum AMB-1		43	43
No Yes	Rhodospirillum centenum SW		37	37
No Yes	Rhodospirillum rubrum ATCC 11170		25	25
No Yes	Azospirillum sp. B510		15	15
No Yes	Granulibacter bethesdensis CGDNIH1		32	29
No Yes	Gluconacetobacter diazotrophicus PAl 5		34	32
No Yes	Gluconobacter oxydans 621H		31	31
No Yes	Acetobacter pasteurianus IFO 3283-01		28	28
No Yes	alpha proteobacterium IMCC1322		13	13
No Yes	Candidatus Pelagibacter ubique HTCC1062		11	11
No Yes	Neorickettsia sennetsu Miyayama		1	1
No Yes	Neorickettsia risticii Illinois		1	1
No Yes	Ehrlichia chaffeensis Arkansas		1	1
No Yes	Ehrlichia canis Jake		1	1
No Yes	Ehrlichia ruminantium Welgevonden		1	1
No Yes	Anaplasma phagocytophilum HZ		1	1
No Yes	Anaplasma marginale St. Maries		2	2
No Yes	Anaplasma centrale Israel		2	2
No Yes	Orientia tsutsugamushi Boryong		1	1
No Yes	Rickettsia bellii RML369-C		10	9
No Yes	Rickettsia canadensis McKiel		6	6
No Yes	Rickettsia typhi Wilmington		7	7
No Yes	Rickettsia prowazekii Madrid E		8	8
No Yes	Rickettsia peacockii Rustic		8	7
No Yes	Rickettsia felis URRWXCal2		11	10
No Yes	Rickettsia massiliae MTU5		7	6
No Yes	Rickettsia africae ESF-5		7	6
No Yes	Rickettsia akari Hartford		9	8
No Yes	Rickettsia rickettsii Sheila Smith		8	7
No Yes	Rickettsia conorii Malish 7		9	8
No Yes	Wolbachia endosymbiont of Culex_quinquefasciatus Pel		4	4
No Yes	Wolbachia endosymbiont of Drosophila melanogaster (Genus only)		5	5
No Yes	Wolbachia endosymbiont TRS of Brugia malayi		2	2
No Yes	Wolbachia sp. wRi		6	6
No Yes	Xanthobacter autotrophicus Py2		27	26
No Yes	Azorhizobium caulinodans ORS 571		32	31
No Yes	Methylobacterium chloromethanicum CM4		51	49
No Yes	Methylobacterium extorquens PA1		53	51
No Yes	Methylobacterium sp. 4-46		51	50
No Yes	Methylobacterium populi BJ001		49	47
No Yes	Methylobacterium nodulans ORS 2060		56	53
No Yes	Methylobacterium radiotolerans JCM 2831		57	56
No Yes	Ochrobactrum anthropi ATCC 49188		30	30
No Yes	Brucella microti CCM 4915		18	18
No Yes	Brucella canis ATCC 23365		16	16
No Yes	Brucella suis 1330		18	18
No Yes	Brucella melitensis bv. 1 16M		18	18
No Yes	Brucella ovis ATCC 25840		17	17
No Yes	Brucella abortus bv. 1 9-941		15	15
No Yes	Sinorhizobium medicae WSM419		14	14
No Yes	Sinorhizobium meliloti 1021		14	14
No Yes	Rhizobium etli CFN 42		39	39
No Yes	Rhizobium sp. NGR234		17	17
No Yes	Rhizobium leguminosarum bv. viciae 3841		36	36
No Yes	Agrobacterium vitis S4		33	32
No Yes	Agrobacterium radiobacter K84		42	40
No Yes	Agrobacterium tumefaciens C58		31	31
No Yes	Candidatus Liberibacter asiaticus psy62		6	5
No Yes	Chelativorans sp. BNC1		27	27
No Yes	Parvibaculum lavamentivorans DS-1		17	17
No Yes	Mesorhizobium loti MAFF303099		45	45
No Yes	Methylocella silvestris BL2		25	25
No Yes	Beijerinckia indica ssp. indica ATCC 9039		37	36
No Yes	Oligotropha carboxidovorans OM5		20	20
No Yes	Rhodopseudomonas palustris CGA009		25	25
No Yes	Nitrobacter winogradskyi Nb-255		23	22
No Yes	Nitrobacter hamburgensis X14		28	27
No Yes	Bradyrhizobium sp. ORS278		31	31
No Yes	Bradyrhizobium japonicum USDA 110		30	30
No Yes	Bartonella tribocorum CIP 105476		4	4
No Yes	Bartonella henselae Houston-1		4	4
No Yes	Bartonella grahamii as4aup		4	4
No Yes	Bartonella quintana Toulouse		4	4
No Yes	Bartonella bacilliformis KC583		4	4
No Yes	Acidithiobacillus ferrooxidans ATCC 23270		24	24
No Yes	Mannheimia succiniciproducens MBEL55E		14	14
No Yes	Aggregatibacter aphrophilus NJ8700		14	14
No Yes	Aggregatibacter actinomycetemcomitans D11S-1		16	16
No Yes	Haemophilus somnus 129PT		12	12
No Yes	Pasteurella multocida ssp. multocida Pm70		18	16
No Yes	Haemophilus parasuis SH0165		13	13
No Yes	Haemophilus ducreyi 35000HP		13	13
No Yes	Haemophilus influenzae Rd KW20		15	15
No Yes	Actinobacillus succinogenes 130Z		12	11
No Yes	Actinobacillus pleuropneumoniae L20		13	13
No Yes	Tolumonas auensis DSM 9187		21	21
No Yes	Aeromonas salmonicida ssp. salmonicida A449		21	21
No Yes	Aeromonas hydrophila ssp. hydrophila ATCC 7966		24	24
No Yes	Aliivibrio salmonicida LFI1238		31	31
No Yes	Vibrio fischeri ES114		22	22
No Yes	Vibrio parahaemolyticus RIMD 2210633		19	19
No Yes	Vibrio harveyi ATCC BAA-1116		15	15
No Yes	Vibrio sp. Ex25		18	18
No Yes	Vibrio splendidus LGP32		20	20
No Yes	Vibrio vulnificus YJ016 (Good annotation)		17	17
No Yes	Vibrio cholerae O1 biov. El Tor N16961		12	12
No Yes	Photobacterium profundum SS9		20	20
No Yes	Psychromonas ingrahamii 37		22	22
No Yes	Idiomarina loihiensis L2TR		14	14
No Yes	Shewanella piezotolerans WP3		18	18
No Yes	Shewanella loihica PV-4		16	16
No Yes	Shewanella halifaxensis HAW-EB4		22	22
No Yes	Shewanella sediminis HAW-EB3		23	23
No Yes	Shewanella denitrificans OS217		17	17
No Yes	Shewanella pealeana ATCC 700345		21	21
No Yes	Shewanella oneidensis MR-1		17	17
No Yes	Shewanella baltica OS155		21	21
No Yes	Shewanella woodyi ATCC 51908		21	20
No Yes	Shewanella sp. MR-7		15	15
No Yes	Shewanella amazonensis SB2B		17	17
No Yes	Shewanella violacea DSS12		24	24
No Yes	Shewanella frigidimarina NCIMB 400		20	20
No Yes	Shewanella putrefaciens CN-32		20	20
No Yes	Colwellia psychrerythraea 34H		19	19
No Yes	Pseudoalteromonas atlantica T6c		32	32
No Yes	Pseudoalteromonas haloplanktis TAC125		11	11
No Yes	Teredinibacter turnerae T7901		27	27
No Yes	Saccharophagus degradans 2-40		29	29
No Yes	Marinobacter aquaeolei VT8		30	29
No Yes	Alteromonas macleodii Deep ecotype		34	33
No Yes	Hahella chejuensis KCTC 2396		34	34
No Yes	Alcanivorax borkumensis SK2		14	14
No Yes	Marinomonas sp. MWYL1		14	14
No Yes	Chromohalobacter salexigens DSM 3043		19	19
No Yes	Methylococcus capsulatus Bath		32	31
No Yes	Dichelobacter nodosus VCS1703A		9	9
No Yes	Stenotrophomonas maltophilia R551-3		25	25
No Yes	Xylella fastidiosa 9a5c		14	14
No Yes	Xanthomonas axonopodis pv. citri 306		28	27
No Yes	Xanthomonas albilineans		20	19
No Yes	Xanthomonas oryzae pv. oryzae KACC10331		22	21
No Yes	Xanthomonas campestris pv. campestris ATCC 33913 (Completed 2001)		29	27
No Yes	Halothiobacillus neapolitanus c2		23	21
No Yes	Alkalilimnicola ehrlichii MLHE-1		23	23
No Yes	Thioalkalivibrio sp. HL-EbGR7		22	22
No Yes	Halorhodospira halophila SL1		16	16
No Yes	Allochromatium vinosum DSM 180		24	24
No Yes	Nitrosococcus halophilus Nc4		39	39
No Yes	Nitrosococcus oceani ATCC 19707		22	22
No Yes	Coxiella burnetii RSA 493		11	11
No Yes	Legionella longbeachae NSW150		19	19
No Yes	Legionella pneumophila ssp. pneumophila Philadelphia 1		12	12
No Yes	Kangiella koreensis DSM 16069		9	9
No Yes	Baumannia cicadellinicola Hc		2	2
No Yes	Candidatus Vesicomyosocius okutanii HA		6	6
No Yes	Candidatus Ruthia magnifica Cm		12	12
No Yes	Cronobacter turicensis z3032		24	24
No Yes	Cronobacter sakazakii ATCC BAA-894		24	24
No Yes	Candidatus Riesia pediculicola USDA		2	2
No Yes	Dickeya zeae Ech1591		22	21
No Yes	Dickeya dadantii Ech703		19	18
No Yes	Candidatus Hamiltonella defensa 5AT		12	12
No Yes	Candidatus Blochmannia floridanus		2	2
No Yes	Pectobacterium wasabiae WPP163		21	21
No Yes	Pectobacterium atrosepticum SCRI1043		23	23
No Yes	Pectobacterium carotovorum ssp. carotovorum PC1		21	21
No Yes	Sodalis glossinidius morsitans		15	15
No Yes	Pantoea ananatis LMG 20103		31	29
No Yes	Wigglesworthia glossinidia		6	6
No Yes	Buchnera aphidicola APS		2	2
No Yes	Photorhabdus asymbiotica		17	17
No Yes	Photorhabdus luminescens ssp. laumondii TTO1		23	23
No Yes	Edwardsiella ictaluri 93-146		16	16
No Yes	Edwardsiella tarda EIB202		24	24
No Yes	Yersinia pseudotuberculosis IP 32953		18	18
No Yes	Yersinia pestis CO92		17	17
No Yes	Yersinia enterocolitica ssp. enterocolitica 8081		23	23
No Yes	Xenorhabdus bovienii SS-2004		12	12
No Yes	Shigella sonnei Ss046		17	17
No Yes	Shigella flexneri 2a 2457T		18	18
No Yes	Shigella dysenteriae Sd197		19	19
No Yes	Shigella boydii Sb227		19	19
No Yes	Serratia proteamaculans 568		23	23
No Yes	Salmonella enterica ssp. enterica ser. Typhimurium LT2		28	28
No Yes	Proteus mirabilis HI4320		16	16
No Yes	Klebsiella variicola At-22		17	17
No Yes	Klebsiella pneumoniae ssp. pneumoniae MGH 78578		23	23
No Yes	Escherichia fergusonii ATCC 35469		27	27
No Yes	Escherichia coli K-12 subMG1655		23	23
No Yes	Erwinia tasmaniensis Et1/99		21	21
No Yes	Erwinia pyrifoliae Ep1/96		21	21
No Yes	Erwinia amylovora ATCC 49946		23	23
No Yes	Enterobacter sp. 638		22	22
No Yes	Citrobacter rodentium ICC168		24	24
No Yes	Citrobacter koseri ATCC BAA-895		22	22
No Yes	Azotobacter vinelandii DJ		35	34
No Yes	Pseudomonas entomophila L48		34	30
No Yes	Pseudomonas syringae pv. tomato DC3000		37	32
No Yes	Pseudomonas stutzeri A1501		18	17
No Yes	Pseudomonas putida KT2440		27	27
No Yes	Pseudomonas fluorescens Pf-5		40	36
No Yes	Pseudomonas mendocina ymp		22	21
No Yes	Pseudomonas aeruginosa PAO1		27	26
No Yes	Cellvibrio japonicus Ueda107		26	25
No Yes	Psychrobacter sp. PRwf-1		9	9
No Yes	Psychrobacter arcticus 273-4		15	14
No Yes	Psychrobacter cryohalolentis K5		14	13
No Yes	Acinetobacter sp. ADP1		19	19
No Yes	Acinetobacter baumannii ATCC 17978		13	13
No Yes	Thiomicrospira crunogena XCL-2		15	15
No Yes	Francisella philomiragia ssp. philomiragia ATCC 25017		22	22
No Yes	Francisella tularensis ssp. tularensis SCHU S4		14	14
No Yes	Gloeobacter violaceus PCC 7421		45	45
No Yes	Acaryochloris marina MBIC11017		42	42
No Yes	Prochlorococcus marinus MIT 9313		20	20
No Yes	Nostoc punctiforme PCC 73102		60	60
No Yes	Nostoc sp. PCC 7120		70	70
No Yes	Anabaena variabilis ATCC 29413		64	64
No Yes	Trichodesmium erythraeum IMS101		57	51
No Yes	Thermosynechococcus elongatus BP-1		30	30
No Yes	cyanobacterium UCYN-A		16	16
No Yes	Cyanothece sp. ATCC 51142		53	52
No Yes	Synechocystis sp. PCC 6803		32	32
No Yes	Synechococcus elongatus PCC 6301		26	26
No Yes	Microcystis aeruginosa NIES-843		48	48
No Yes	Nitrosopumilus maritimus SCM1		15	15
No Yes	Nanoarchaeum equitans Kin4-M		2	2
No Yes	Candidatus Korarchaeum cryptofilum OPF8		11	11
No Yes	Methanocella paludicola SANAE		36	33
No Yes	Methanosaeta thermophila PT		15	15
No Yes	Methanococcoides burtonii DSM 6242		25	24
No Yes	Methanosarcina acetivorans C2A		25	23
No Yes	Methanosarcina mazei Go1		33	32
No Yes	Methanosarcina barkeri Fusaro		31	28
No Yes	Methanohalophilus mahii DSM 5219		15	15
No Yes	Methanosphaerula palustris E1-9c		23	23
No Yes	Candidatus Methanoregula boonei 6A8		18	18
No Yes	Methanospirillum hungatei JF-1		23	23
No Yes	Methanocorpusculum labreanum Z		15	15
No Yes	Methanoculleus marisnigri JR1		26	25
No Yes	Methanopyrus kandleri AV19		10	10
No Yes	Ferroglobus placidus DSM 10642		15	15
No Yes	Archaeoglobus profundus DSM 5631		20	19
No Yes	Archaeoglobus fulgidus DSM 4304		17	17
No Yes	Thermococcus onnurineus NA1		20	20
No Yes	Thermococcus kodakarensis KOD1		20	20
No Yes	Thermococcus gammatolerans EJ3		22	22
No Yes	Thermococcus sibiricus MM 739		21	21
No Yes	Pyrococcus horikoshii OT3		22	22
No Yes	Pyrococcus abyssi GE5		24	23
No Yes	Pyrococcus furiosus DSM 3638		22	21
No Yes	Thermoplasma volcanium GSS1		20	20
No Yes	Thermoplasma acidophilum DSM 1728		15	15
No Yes	Picrophilus torridus DSM 9790		21	21
No Yes	Haloquadratum walsbyi DSM 16790		21	21
No Yes	Halomicrobium mukohataei DSM 12286		24	24
No Yes	Halorhabdus utahensis DSM 12940		24	24
No Yes	Haloterrigena turkmenica DSM 5511		24	24
No Yes	Natronomonas pharaonis DSM 2160		18	18
No Yes	Natrialba magadii ATCC 43099		18	18
No Yes	Halorubrum lacusprofundi ATCC 49239		12	12
No Yes	Haloferax volcanii DS2		16	16
No Yes	Halobacterium salinarum R1		19	19
No Yes	Halobacterium sp. NRC-1		18	18
No Yes	Haloarcula marismortui ATCC 43049		24	24
No Yes	Methanocaldococcus sp. FS406-22		9	9
No Yes	Methanocaldococcus fervens AG86		8	8
No Yes	Methanocaldococcus vulcanius M7		10	10
No Yes	Methanocaldococcus jannaschii DSM 2661		9	9
No Yes	Methanococcus aeolicus Nankai-3		13	13
No Yes	Methanococcus maripaludis S2		9	9
No Yes	Methanococcus vannielii SB		10	10
No Yes	Methanothermobacter thermautotrophicus Delta H		22	22
No Yes	Methanosphaera stadtmanae DSM 3091		41	34
No Yes	Methanobrevibacter ruminantium M1		34	32
No Yes	Methanobrevibacter smithii ATCC 35061		34	33
No Yes	uncultured methanogenic archaeon RC-I		21	21
No Yes	Aciduliprofundum boonei T469		12	12
No Yes	Hyperthermus butylicus DSM 5456		8	8
No Yes	Aeropyrum pernix K1		14	14
No Yes	Ignicoccus hospitalis KIN4/I		6	6
No Yes	Staphylothermus marinus F1		8	8
No Yes	Desulfurococcus kamchatkensis 1221n		9	9
No Yes	Metallosphaera sedula DSM 5348		20	20
No Yes	Sulfolobus tokodaii 7		24	24
No Yes	Sulfolobus islandicus Y.N.15.51		34	34
No Yes	Sulfolobus solfataricus P2		26	26
No Yes	Sulfolobus acidocaldarius DSM 639		25	25
No Yes	Thermofilum pendens Hrk 5		17	16
No Yes	Caldivirga maquilingensis IC-167		19	19
No Yes	Pyrobaculum calidifontis JCM 11548		19	19
No Yes	Pyrobaculum arsenaticum DSM 13514		17	17
No Yes	Pyrobaculum aerophilum IM2		19	19
No Yes	Pyrobaculum islandicum DSM 4184		18	18
No Yes	Thermoproteus neutrophilus V24Sta		24	24
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	71	70
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	74	74
No Yes	Cryptococcus neoformans var. grubii H99		25	25
No Yes	Cryptococcus neoformans B-3501A		26	26
No Yes	Ajellomyces dermatitidis ER-3		32	32
No Yes	Histoplasma capsulatum H143		30	30
No Yes	Histoplasma capsulatum H88		30	30
No Yes	Histoplasma capsulatum G186AR		30	30
No Yes	Paracoccidioides brasiliensis Pb01		27	27
No Yes	Paracoccidioides brasiliensis Pb03		28	28
No Yes	Coccidioides posadasii str. Silveira		35	35
No Yes	Coccidioides immitis RMSCC 3703		30	30
No Yes	Coccidioides immitis RMSCC 2394		34	34
No Yes	Coccidioides immitis H538.4		33	33
No Yes	Aspergillus fumigatus A1163		38	38
No Yes	Candida albicans WO-1		34	34
No Yes	Saccharomyces cerevisiae YJM789		33	33
No Yes	Saccharomyces cerevisiae RM11-1a		32	32
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	33	33
No Yes	Schizosaccharomyces pombe 972h-		25	25
No Yes	Batrachochytrium dendrobatidis JAM81		45	45
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	156	153
No Yes	Plasmodium falciparum HB3		7	7
No Yes	Plasmodium falciparum Dd2		4	4
No Yes	Ureaplasma parvum ser. 3 ATCC 27815		1	1
No Yes	Mycoplasma agalactiae		4	4
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis JB197		36	34
No Yes	Leptospira interrogans ser. Copenhageni Fiocruz L1-130		33	32
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Ames)		32	31
No Yes	Treponema pallidum ssp. pallidum SS14		3	3
No Yes	Borrelia burgdorferi ZS7		4	4
No Yes	Bifidobacterium longum ssp. infantis ATCC 15697		18	17
No Yes	Bifidobacterium longum		15	15
No Yes	Bifidobacterium animalis ssp. lactis Bl-04		23	23
No Yes	Bifidobacterium animalis ssp. lactis DSM 10140		23	23
No Yes	Frankia sp. EAN1pec		42	42
No Yes	Propionibacterium acnes SK137		10	10
No Yes	Mycobacterium sp. KMS		27	27
No Yes	Mycobacterium sp. JLS		25	25
No Yes	Mycobacterium avium 104		18	18
No Yes	Mycobacterium tuberculosis KZN 1435		26	26
No Yes	Mycobacterium tuberculosis H37Ra		26	26
No Yes	Mycobacterium tuberculosis F11		26	26
No Yes	Mycobacterium tuberculosis CDC1551		26	26
No Yes	Mycobacterium bovis BCG Tokyo 172		24	24
No Yes	Mycobacterium bovis BCG Pasteur 1173P2		24	24
No Yes	Mycobacterium leprae Br4923		13	13
No Yes	Corynebacterium glutamicum R		18	18
No Yes	Corynebacterium glutamicum ATCC 13032 Bielefeld		21	21
No Yes	Tropheryma whipplei TW08/27		10	10
No Yes	Clavibacter michiganensis ssp. sepedonicus		22	21
No Yes	Dehalococcoides sp. GT		5	5
No Yes	Dehalococcoides sp. VS		8	8
No Yes	Dehalococcoides sp. BAV1		11	11
No Yes	Chlorobium phaeobacteroides BS1		27	27
No Yes	Porphyromonas gingivalis ATCC 33277		19	19
No Yes	Bacteroides fragilis YCH46		60	59
No Yes	Salinibacter ruber		22	22
No Yes	Blattabacterium sp. BPLAN		1	1
No Yes	Chlamydophila pneumoniae J138		4	4
No Yes	Chlamydophila pneumoniae CWL029		4	4
No Yes	Chlamydophila pneumoniae AR39		4	4
No Yes	Chlamydia trachomatis B/TZ1A828/OT		4	4
No Yes	Chlamydia trachomatis B/Jali20/OT		4	4
No Yes	Chlamydia trachomatis L2b/UCH-1/proctitis		4	4
No Yes	Chlamydia trachomatis 434/Bu		4	4
No Yes	Chlamydia trachomatis A/HAR-13		4	4
No Yes	Thermus thermophilus HB8		12	12
No Yes	Desulfitobacterium hafniense DCB-2		27	26
No Yes	Clostridium kluyveri NBRC 12016		25	24
No Yes	Clostridium perfringens SM101		16	16
No Yes	Clostridium perfringens ATCC 13124		16	16
No Yes	Clostridium difficile R20291		22	22
No Yes	Clostridium difficile CD196		22	22
No Yes	Clostridium botulinum F Langeland		22	21
No Yes	Clostridium botulinum E3 Alaska E43		31	31
No Yes	Clostridium botulinum B1 Okra		28	26
No Yes	Clostridium botulinum Ba4 657		28	27
No Yes	Clostridium botulinum B Eklund 17B		30	29
No Yes	Clostridium botulinum A2 Kyoto		25	24
No Yes	Clostridium botulinum A3 Loch Maree		25	24
No Yes	Clostridium botulinum A Hall		25	24
No Yes	Clostridium botulinum A ATCC 19397		25	24
No Yes	Lactobacillus casei BL23		20	20
No Yes	Lactobacillus rhamnosus Lc 705		21	21
No Yes	Lactobacillus johnsonii FI9785		9	9
No Yes	Lactobacillus reuteri JCM 1112		9	9
No Yes	Lactobacillus plantarum JDM1		19	19
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC BAA-365		12	12
No Yes	Lactococcus lactis ssp. lactis KF147		23	23
No Yes	Lactococcus lactis ssp. cremoris MG1363		26	25
No Yes	Lactococcus lactis ssp. cremoris SK11		16	16
No Yes	Streptococcus equi ssp. equi 4047		13	13
No Yes	Streptococcus equi ssp. zooepidemicus		13	13
No Yes	Streptococcus pyogenes MGAS10750		8	8
No Yes	Streptococcus pyogenes MGAS10270		10	10
No Yes	Streptococcus pyogenes MGAS2096		10	10
No Yes	Streptococcus pyogenes MGAS9429		10	10
No Yes	Streptococcus pyogenes MGAS6180		10	10
No Yes	Streptococcus pyogenes NZ131		10	10
No Yes	Streptococcus pyogenes MGAS8232		10	10
No Yes	Streptococcus pyogenes MGAS10394		10	10
No Yes	Streptococcus pyogenes Manfredo		10	10
No Yes	Streptococcus pyogenes MGAS315		10	10
No Yes	Streptococcus pyogenes SSI-1		10	10
No Yes	Streptococcus pyogenes MGAS5005		10	10
No Yes	Streptococcus pneumoniae ATCC 700669		23	22
No Yes	Streptococcus pneumoniae CGSP14		25	24
No Yes	Streptococcus pneumoniae G54		12	12
No Yes	Streptococcus pneumoniae P1031		11	11
No Yes	Streptococcus pneumoniae JJA		21	20
No Yes	Streptococcus pneumoniae 70585		22	21
No Yes	Streptococcus pneumoniae Hungary19A-6		17	17
No Yes	Streptococcus pneumoniae Taiwan19F-14		12	12
No Yes	Streptococcus pneumoniae D39		15	15
No Yes	Streptococcus pneumoniae R6 (Non-virulent)		14	14
No Yes	Streptococcus agalactiae A909		22	22
No Yes	Streptococcus agalactiae 2603V/R		23	23
No Yes	Streptococcus mutans NN2025		12	12
No Yes	Streptococcus thermophilus LMD-9		14	13
No Yes	Streptococcus thermophilus CNRZ1066 (Younger strain)		13	12
No Yes	Streptococcus suis BM407		17	17
No Yes	Streptococcus suis SC84		18	18
No Yes	Streptococcus suis 98HAH33		18	18
No Yes	Streptococcus suis P1/7		17	17
No Yes	Listeria monocytogenes 08-5578		14	14
No Yes	Listeria monocytogenes 08-5923		14	14
No Yes	Listeria monocytogenes Clip80459		11	11
No Yes	Listeria monocytogenes HCC23		10	10
No Yes	Listeria monocytogenes 4b F2365		11	11
No Yes	Geobacillus sp. Y412MC61		21	21
No Yes	Geobacillus sp. Y412MC10		40	38
No Yes	Bacillus licheniformis ATCC 14580		20	20
No Yes	Bacillus cytotoxicus NVH 391-98		27	24
No Yes	Bacillus thuringiensis Al Hakam		30	25
No Yes	Bacillus cereus 03BB102		31	25
No Yes	Bacillus cereus AH820		32	26
No Yes	Bacillus cereus AH187		27	25
No Yes	Bacillus cereus B4264		35	29
No Yes	Bacillus cereus G9842		34	31
No Yes	Bacillus cereus Q1		32	29
No Yes	Bacillus cereus E33L		31	25
No Yes	Bacillus cereus ATCC 10987		30	27
No Yes	Bacillus anthracis A0248		26	21
No Yes	Bacillus anthracis CDC 684		35	29
No Yes	Bacillus anthracis Sterne		35	29
No Yes	Bacillus anthracis Ames		33	27
No Yes	Bacillus megaterium DSM319		28	26
No Yes	Staphylococcus epidermidis ATCC 12228		9	9
No Yes	Staphylococcus aureus RF122		11	11
No Yes	Staphylococcus aureus ssp. aureus ED98		12	11
No Yes	Staphylococcus aureus ssp. aureus Newman		12	11
No Yes	Staphylococcus aureus ssp. aureus Mu3		12	11
No Yes	Staphylococcus aureus ssp. aureus USA300_TCH1516		11	10
No Yes	Staphylococcus aureus ssp. aureus USA300_FPR3757		12	11
No Yes	Staphylococcus aureus ssp. aureus JH1		12	11
No Yes	Staphylococcus aureus ssp. aureus JH9		12	11
No Yes	Staphylococcus aureus ssp. aureus MSSA476		12	11
No Yes	Staphylococcus aureus ssp. aureus MRSA252		11	11
No Yes	Staphylococcus aureus ssp. aureus MW2		12	11
No Yes	Staphylococcus aureus ssp. aureus N315		13	12
No Yes	Staphylococcus aureus ssp. aureus Mu50		12	11
No Yes	Staphylococcus aureus ssp. aureus COL		12	11
No Yes	Campylobacter jejuni RM1221		18	16
No Yes	Campylobacter jejuni ssp. jejuni 81116		21	20
No Yes	Campylobacter jejuni ssp. jejuni 81-176		21	20
No Yes	Campylobacter jejuni ssp. doylei 269.97		27	27
No Yes	Helicobacter pylori B38		12	12
No Yes	Helicobacter pylori P12		12	12
No Yes	Helicobacter pylori G27		13	13
No Yes	Helicobacter pylori Shi470		14	14
No Yes	Helicobacter pylori HPAG1		14	14
No Yes	Helicobacter pylori J99		13	13
No Yes	Desulfovibrio vulgaris DP4		41	41
No Yes	Desulfovibrio vulgaris Miyazaki F		46	46
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans ATCC 27774		28	26
No Yes	Geobacter sp. M21		55	50
No Yes	Anaeromyxobacter sp. K		38	38
No Yes	Anaeromyxobacter dehalogenans 2CP-1		36	36
No Yes	Azoarcus sp. BH72		30	29
No Yes	Neisseria meningitidis alpha14		11	11
No Yes	Neisseria meningitidis 053442		13	13
No Yes	Neisseria meningitidis FAM18		13	13
No Yes	Neisseria meningitidis MC58		10	10
No Yes	Neisseria gonorrhoeae NCCP11945		13	13
No Yes	Ralstonia eutropha H16		25	25
No Yes	Ralstonia pickettii 12D		24	24
No Yes	Polynucleobacter necessarius ssp. necessarius STIR1		14	14
No Yes	Burkholderia sp. CCGE1002		48	47
No Yes	Burkholderia pseudomallei MSHR346		22	21
No Yes	Burkholderia pseudomallei 1106a		40	39
No Yes	Burkholderia pseudomallei 668		42	41
No Yes	Burkholderia pseudomallei 1710b		41	40
No Yes	Burkholderia mallei NCTC 10229		32	31
No Yes	Burkholderia mallei NCTC 10247		32	31
No Yes	Burkholderia mallei SAVP1		30	29
No Yes	Burkholderia ambifaria MC40-6		39	39
No Yes	Burkholderia cenocepacia MC0-3		40	40
No Yes	Burkholderia cenocepacia HI2424		40	39
No Yes	Burkholderia cenocepacia J2315		38	37
No Yes	Burkholderia multivorans ATCC 17616		30	30
No Yes	Caulobacter crescentus NA1000		22	22
No Yes	Zymomonas mobilis ssp. mobilis NCIMB 11163		20	20
No Yes	Rhodobacter sphaeroides KD131		29	29
No Yes	Rhodobacter sphaeroides ATCC 17025		23	23
No Yes	Rhodobacter sphaeroides ATCC 17029		28	28
No Yes	Gluconacetobacter diazotrophicus PAl 5		33	31
No Yes	Ehrlichia ruminantium Gardel		1	1
No Yes	Ehrlichia ruminantium Welgevonden		1	1
No Yes	Anaplasma marginale Florida		2	2
No Yes	Orientia tsutsugamushi Ikeda		1	1
No Yes	Rickettsia bellii OSU 85-389		10	9
No Yes	Rickettsia rickettsii Iowa		8	7
No Yes	Methylobacterium extorquens DM4		44	42
No Yes	Methylobacterium extorquens AM1		43	42
No Yes	Brucella suis ATCC 23445		17	17
No Yes	Brucella melitensis ATCC 23457		16	16
No Yes	Brucella abortus S19		15	15
No Yes	Brucella melitensis biov. Abortus 2308		15	15
No Yes	Rhizobium etli CIAT 652		34	34
No Yes	Rhizobium leguminosarum bv. trifolii WSM2304		38	38
No Yes	Rhizobium leguminosarum bv. trifolii WSM1325		36	36
No Yes	Rhodopseudomonas palustris TIE-1		22	22
No Yes	Rhodopseudomonas palustris HaA2		26	26
No Yes	Rhodopseudomonas palustris BisB5		22	22
No Yes	Rhodopseudomonas palustris BisB18		24	24
No Yes	Rhodopseudomonas palustris BisA53		23	23
No Yes	Bradyrhizobium sp. BTAi1		30	30
No Yes	Acidithiobacillus ferrooxidans ATCC 53993		22	22
No Yes	Haemophilus somnus 2336		15	14
No Yes	Haemophilus influenzae PittGG		14	14
No Yes	Haemophilus influenzae PittEE		18	18
No Yes	Haemophilus influenzae 86-028NP		15	15
No Yes	Actinobacillus pleuropneumoniae ser. 3 JL03		12	12
No Yes	Actinobacillus pleuropneumoniae ser. 7 AP76		16	16
No Yes	Vibrio fischeri MJ11		20	20
No Yes	Vibrio vulnificus CMCP6 (Poor annotation)		13	13
No Yes	Vibrio cholerae M66-2		11	11
No Yes	Vibrio cholerae O395		12	12
No Yes	Vibrio cholerae MJ-1236		12	12
No Yes	Shewanella sp. W3-18-1		17	17
No Yes	Shewanella sp. ANA-3		20	20
No Yes	Shewanella baltica OS223		14	14
No Yes	Shewanella baltica OS185		18	18
No Yes	Shewanella baltica OS195		21	21
No Yes	Shewanella sp. MR-4		18	18
No Yes	Stenotrophomonas maltophilia K279a		24	24
No Yes	Xylella fastidiosa M23		13	13
No Yes	Xylella fastidiosa M12		14	14
No Yes	Xylella fastidiosa Temecula1		14	14
No Yes	Xanthomonas campestris pv. vesicatoria 85-10 (Completed 2005)		26	25
No Yes	Xanthomonas oryzae pv. oryzae PXO99A		24	22
No Yes	Xanthomonas oryzae pv. oryzae MAFF 311018		22	21
No Yes	Xanthomonas campestris pv. campestris B100		29	27
No Yes	Xanthomonas campestris pv. campestris 8004 (Completed 2005)		29	27
No Yes	Thioalkalivibrio sp. K90mix		16	16
No Yes	Coxiella burnetii CbuK_Q154		11	11
No Yes	Coxiella burnetii CbuG_Q212		11	11
No Yes	Coxiella burnetii Dugway 5J108-111		11	11
No Yes	Coxiella burnetii RSA 331		10	10
No Yes	Legionella pneumophila Corby		11	11
No Yes	Legionella pneumophila Paris		12	12
No Yes	Legionella pneumophila Lens		11	11
No Yes	Dickeya dadantii Ech586		25	25
No Yes	Candidatus Blochmannia pennsylvanicus BPEN		3	3
No Yes	Buchnera aphidicola Bp		1	1
No Yes	Buchnera aphidicola Tuc7		2	2
No Yes	Buchnera aphidicola 5A		2	2
No Yes	Buchnera aphidicola Sg		2	2
No Yes	Yersinia pseudotuberculosis PB1/+		18	18
No Yes	Yersinia pseudotuberculosis YPIII		19	19
No Yes	Yersinia pseudotuberculosis IP 31758		18	18
No Yes	Yersinia pestis Z176003		17	17
No Yes	Yersinia pestis Pestoides F		18	18
No Yes	Yersinia pestis Nepal516		17	17
No Yes	Yersinia pestis Antiqua		17	17
No Yes	Yersinia pestis Angola		15	15
No Yes	Yersinia pestis biov. Microtus 91001		15	15
No Yes	Yersinia pestis KIM		18	18
No Yes	Shigella flexneri 5 8401		22	22
No Yes	Shigella flexneri 2a 301		19	19
No Yes	Shigella boydii CDC 3083-94		19	19
No Yes	Salmonella enterica ssp. arizonae ser. 62:z4,z23:--		15	15
No Yes	Salmonella enterica ssp. enterica ser. Schwarzengrund CVM19633		26	26
No Yes	Salmonella enterica ssp. enterica ser. Enteritidis P125109		23	23
No Yes	Salmonella enterica ssp. enterica ser. Choleraesuis str. SC-B67		22	22
No Yes	Salmonella enterica ssp. enterica ser. Newport SL254		28	28
No Yes	Salmonella enterica ssp. enterica ser. Dublin CT_02021853		25	25
No Yes	Salmonella enterica ssp. enterica ser. Typhi CT18		24	24
No Yes	Salmonella enterica ssp. enterica ser. Typhi Ty2		25	25
No Yes	Salmonella enterica ssp. enterica ser. Agona SL483		25	25
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi C RKS4594		22	22
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi B SPB7		27	27
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A AKU_12601		25	25
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A ATCC 9150		28	28
No Yes	Salmonella enterica ssp. enterica ser. Heidelberg SL476		28	28
No Yes	Salmonella enterica ssp. enterica ser. Gallinarum 287/91		22	22
No Yes	Klebsiella pneumoniae 342		19	19
No Yes	Klebsiella pneumoniae NTUH-K2044		23	23
No Yes	Escherichia coli ED1a		23	23
No Yes	Escherichia coli IAI39		28	28
No Yes	Escherichia coli UMN026		27	27
No Yes	Escherichia coli 55989		23	23
No Yes	Escherichia coli S88		26	26
No Yes	Escherichia coli IAI1		24	24
No Yes	Escherichia coli BL21		26	26
No Yes	Escherichia coli ATCC 8739		27	27
No Yes	Escherichia coli BL21(DE3)		22	22
No Yes	Escherichia coli SMS-3-5		31	31
No Yes	Escherichia coli SE11		24	24
No Yes	Escherichia coli APEC O1		26	26
No Yes	Escherichia coli O103:H2 12009		24	24
No Yes	Escherichia coli UTI89		29	29
No Yes	Escherichia coli 536		27	27
No Yes	Escherichia coli HS		23	23
No Yes	Escherichia coli E24377A		26	26
No Yes	Escherichia coli O55:H7 CB9615		24	24
No Yes	Escherichia coli O26:H11 11368		22	22
No Yes	Escherichia coli CFT073		27	27
No Yes	Escherichia coli O111:H- 11128		22	22
No Yes	Escherichia coli O127:H6 E2348/69		21	21
No Yes	Escherichia coli O157:H7 EDL933		24	24
No Yes	Escherichia coli O157:H7 TW14359		24	24
No Yes	Escherichia coli O157:H7 EC4115		23	23
No Yes	Escherichia coli O157:H7 Sakai		24	24
No Yes	Escherichia coli BW2952		23	23
No Yes	Escherichia coli K-12 subW3110		23	23
No Yes	Escherichia coli K-12 subDH10B		24	24
No Yes	Escherichia coli B REL606		26	26
No Yes	Erwinia amylovora CFBP1430		22	22
No Yes	Pseudomonas syringae pv. phaseolicola 1448A		36	32
No Yes	Pseudomonas syringae pv. syringae B728a		34	32
No Yes	Pseudomonas putida W619		32	29
No Yes	Pseudomonas putida F1		33	30
No Yes	Pseudomonas putida GB-1		23	23
No Yes	Pseudomonas fluorescens SBW25		23	23
No Yes	Pseudomonas fluorescens Pf0-1		39	36
No Yes	Pseudomonas aeruginosa LESB58		24	23
No Yes	Pseudomonas aeruginosa PA7		21	20
No Yes	Pseudomonas aeruginosa UCBPP-PA14		24	23
No Yes	Acinetobacter baumannii AB307-0294		11	11
No Yes	Acinetobacter baumannii AYE		12	12
No Yes	Acinetobacter baumannii SDF		9	9
No Yes	Acinetobacter baumannii AB0057		13	13
No Yes	Acinetobacter baumannii ACICU		15	15
No Yes	Francisella novicida U112		13	13
No Yes	Francisella tularensis ssp. mediasiatica FSC147		15	15
No Yes	Francisella tularensis ssp. holarctica FTNF002-00		15	15
No Yes	Francisella tularensis ssp. holarctica OSU18		15	15
No Yes	Francisella tularensis ssp. holarctica		15	15
No Yes	Francisella tularensis ssp. tularensis WY96-3418		15	15
No Yes	Francisella tularensis ssp. tularensis FSC198		14	14
No Yes	Prochlorococcus marinus NATL1A		11	11
No Yes	Prochlorococcus marinus MIT 9301		16	16
No Yes	Prochlorococcus marinus MIT 9515		25	24
No Yes	Prochlorococcus marinus AS9601		21	21
No Yes	Prochlorococcus marinus ssp. marinus CCMP1375		16	16
No Yes	Prochlorococcus marinus ssp. pastoris CCMP1986		20	20
No Yes	Prochlorococcus marinus MIT 9215		21	21
No Yes	Prochlorococcus marinus MIT 9211		17	17
No Yes	Prochlorococcus marinus MIT 9312		17	17
No Yes	Prochlorococcus marinus MIT 9303		26	26
No Yes	Prochlorococcus marinus NATL2A		11	11
No Yes	Cyanothece sp. PCC 8802		55	54
No Yes	Cyanothece sp. PCC 7425		72	72
No Yes	Cyanothece sp. PCC 7424		46	45
No Yes	Cyanothece sp. PCC 8801		53	52
No Yes	Synechococcus sp. JA-2-3Ba(2-13) (Poor annotation)		20	20
No Yes	Synechococcus sp. JA-3-3Ab (Poor annotation)		17	17
No Yes	Synechococcus sp. CC9902 (Poor annotation)		27	27
No Yes	Synechococcus sp. RCC307		26	26
No Yes	Synechococcus sp. CC9605 (Poor annotation)		30	29
No Yes	Synechococcus sp. WH 8102 (Good annotation)		38	36
No Yes	Synechococcus sp. CC9311		19	19
No Yes	Synechococcus sp. WH 7803		20	20
No Yes	Synechococcus sp. PCC 7002		22	22
No Yes	Synechococcus elongatus PCC 7942		26	26
No Yes	Methanococcus maripaludis C6		11	11
No Yes	Methanococcus maripaludis C7		14	14
No Yes	Methanococcus maripaludis C5		13	13
No Yes	Sulfolobus islandicus Y.G.57.14		25	25
No Yes	Sulfolobus islandicus L.S.2.15		34	34
No Yes	Sulfolobus islandicus M.16.27		34	34
No Yes	Sulfolobus islandicus M.14.25		37	37
No Yes	Sulfolobus islandicus M.16.4		33	33
No Yes	Sulfolobus islandicus L.D.8.5		40	40
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	92	92
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		24	24
No Yes	Lotus japonicus (Early assembly)		15	15
No Yes	Prunus persica (Early draft)	Peach	115	114
No Yes	Manihot esculenta (Early draft)	Cassava	170	167
No Yes	Ricinus communis (Early assembly)	Castor bean	126	126
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	137	136
No Yes	Phoenix dactylifera (Early draft)	Date palm	100	100
No Yes	Trypanosoma vivax (Parial)		9	9
No Yes	Trypanosoma congolense (Partial)		11	11
No Yes	Toxoplasma gondii GT1 (Early assembly)		16	16
No Yes	Toxoplasma gondii VEG (Early assembly)		17	17
No Yes	Toxoplasma gondii RH (Archived)		17	17
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	85	84
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	84	83
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	76	76
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	78	78
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	81	81
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	88	87
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	78	78
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	77	76
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	60	59
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	93	91
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	89	87
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	65	65
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	76	75
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	84	82
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	68	68
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	79	79
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	68	68
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	64	63
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	92	92
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	50	49
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	77	75
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	92	92
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	67	67
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	90	89
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	72	72
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	78	78
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	46	46
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	73	71
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	72	72
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	62	62
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	71	71
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	61	59
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	71	69
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	81	81
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	74	74
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	86	86
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	78	77
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	75	74
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	72	72
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	94	93
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	100	99
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	94	94
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	88	88
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	116	113
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	96	96
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		58	56
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		75	73
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	35	35
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	71	70
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	46	45
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	55	54
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	44	44
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	53	53
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	54	54
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	129	128
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	182	181
No Yes	NCBI viral sequences (Viral)		151	150
No Yes	PDB chains (SCOP 1.73) (PDB)		87	87
No Yes	TargetDB (Targets)		1778	1753
No Yes	UniProt 15.0 (UniProt)		37632	37029
No Yes	UniProt 15.0 viral sequences (Viral)		190	189