Cysteine proteinases superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		57743	57743
No Yes	Homo sapiens 49_36k (all transcripts)	Human	269	269
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	178	178
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	123	123
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	141	141
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	191	190
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	253	253
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	104	104
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	100	100
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	106	106
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	203	203
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	230	230
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	91	91
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	109	109
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	124	124
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	111	111
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	104	104
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	95	94
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	116	116
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	162	162
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	84	84
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	111	111
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	162	162
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	85	85
No Yes	Equus caballus 49_2 (all transcripts)	Horse	126	126
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	104	104
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	114	113
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	83	83
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	98	98
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	106	106
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	96	96
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	112	111
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	97	96
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	105	105
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	200	200
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	178	178
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	128	128
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	136	136
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	114	114
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	135	135
No Yes	Xenopus laevis	African clawed frog	164	164
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	174	174
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	213	213
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	187	187
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	148	148
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	157	157
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	324	324
No Yes	Branchiostoma floridae 1.0	Florida lancelet	275	267
No Yes	Ciona savignyi 49_2f (all transcripts)		130	130
No Yes	Ciona intestinalis 49_2i (all transcripts)		117	117
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	217	215
No Yes	Helobdella robusta		98	98
No Yes	Capitella sp. I		112	112
No Yes	Bombyx mori	Domestic silkworm	72	72
No Yes	Nasonia vitripennis	Jewel wasp	53	51
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	123	123
No Yes	Drosophila grimshawi 1.3		89	89
No Yes	Drosophila willistoni 1.3		65	65
No Yes	Drosophila pseudoobscura 2.3		65	62
No Yes	Drosophila persimilis 1.3		70	69
No Yes	Drosophila yakuba 1.3		64	63
No Yes	Drosophila simulans 1.3		60	58
No Yes	Drosophila sechellia 1.3		68	66
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	122	120
No Yes	Drosophila erecta 1.3		61	61
No Yes	Drosophila ananassae 1.3		62	62
No Yes	Drosophila virilis 1.2		67	67
No Yes	Drosophila mojavensis 1.3		62	62
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	73	73
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	74	74
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	66	66
No Yes	Tribolium castaneum 3.0	Red flour beetle	80	80
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	57	57
No Yes	Acyrthosiphon pisum	Pea aphid	87	87
No Yes	Daphnia pulex	Common water flea	149	149
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	75	75
No Yes	Lottia gigantea		118	117
No Yes	Pristionchus pacificus		85	85
No Yes	Meloidogyne incognita	Southern root-knot nematode	153	152
No Yes	Meloidogyne hapla		65	65
No Yes	Brugia malayi	Agent of lymphatic filariasis	58	58
No Yes	Caenorhabditis japonica		72	71
No Yes	Caenorhabditis brenneri		70	69
No Yes	Caenorhabditis remanei		137	134
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	121	119
No Yes	Caenorhabditis briggsae 2		96	94
No Yes	Schistosoma mansoni		90	84
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	146	144
No Yes	Hydra magnipapillata		137	137
No Yes	Trichoplax adhaerens		58	57
No Yes	Proterospongia sp. ATCC 50818		61	60
No Yes	Monosiga brevicollis		55	54
No Yes	Capsaspora owczarzaki ATCC 30864		56	55
No Yes	Malassezia globosa CBS 7966		22	22
No Yes	Ustilago maydis		23	23
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		49	48
No Yes	Melampsora laricis-populina		59	58
No Yes	Sporobolomyces roseus IAM 13481		29	29
No Yes	Serpula lacrymans var. lacrymans S7.9		26	26
No Yes	Coprinopsis cinerea okayama7 130		47	47
No Yes	Pleurotus ostreatus	Oyster mushroom	32	32
No Yes	Laccaria bicolor S238N-H82		49	49
No Yes	Agaricus bisporus var. bisporus		33	33
No Yes	Schizophyllum commune		35	35
No Yes	Heterobasidion annosum		29	29
No Yes	Phanerochaete chrysosporium RP-78 2.1		29	29
No Yes	Postia placenta		48	48
No Yes	Tremella mesenterica		37	37
No Yes	Cryptococcus neoformans JEC21		25	25
No Yes	Magnaporthe grisea 70-15		37	37
No Yes	Podospora anserina		39	39
No Yes	Sporotrichum thermophile ATCC 42464		37	37
No Yes	Thielavia terrestris NRRL 8126		38	38
No Yes	Chaetomium globosum CBS 148.51		35	35
No Yes	Neurospora tetrasperma		35	35
No Yes	Neurospora discreta FGSC 8579		35	35
No Yes	Neurospora crassa OR74A		34	34
No Yes	Cryphonectria parasitica	Chestnut blight fungus	36	36
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		57	56
No Yes	Nectria haematococca mpVI		46	46
No Yes	Fusarium verticillioides 7600		43	43
No Yes	Fusarium graminearum		39	39
No Yes	Trichoderma atroviride		33	33
No Yes	Trichoderma reesei 1.2		34	34
No Yes	Trichoderma virens Gv29-8		35	35
No Yes	Verticillium dahliae VdLs.17		37	37
No Yes	Verticillium albo-atrum VaMs.102		35	35
No Yes	Botrytis cinerea B05.10		36	36
No Yes	Sclerotinia sclerotiorum		39	39
No Yes	Alternaria brassicicola		33	33
No Yes	Pyrenophora tritici-repentis		41	41
No Yes	Cochliobolus heterostrophus		37	37
No Yes	Stagonospora nodorum		45	45
No Yes	Mycosphaerella fijiensis CIRAD86		42	42
No Yes	Mycosphaerella graminicola IPO323		43	43
No Yes	Ajellomyces dermatitidis SLH14081		38	38
No Yes	Histoplasma capsulatum class NAmI strain WU24		35	35
No Yes	Microsporum gypseum		38	38
No Yes	Arthroderma benhamiae CBS 112371		37	37
No Yes	Microsporum canis CBS 113480		34	34
No Yes	Trichophyton equinum CBS 127.97		36	36
No Yes	Trichophyton verrucosum HKI 0517		35	35
No Yes	Trichophyton tonsurans CBS 112818		35	35
No Yes	Trichophyton rubrum CBS 118892		36	36
No Yes	Paracoccidioides brasiliensis Pb18		36	36
No Yes	Coccidioides posadasii RMSCC 3488		34	34
No Yes	Coccidioides immitis RS		35	35
No Yes	Uncinocarpus reesii 1704		35	35
No Yes	Aspergillus fumigatus Af293		38	38
No Yes	Neosartorya fischeri NRRL 181		39	39
No Yes	Penicillium chrysogenum Wisconsin 54-1255		39	39
No Yes	Penicillium marneffei ATCC 18224		37	37
No Yes	Aspergillus carbonarius ITEM 5010		39	39
No Yes	Aspergillus terreus NIH2624		43	43
No Yes	Aspergillus oryzae RIB40		40	40
No Yes	Aspergillus niger ATCC 1015		33	33
No Yes	Aspergillus flavus NRRL3357		40	40
No Yes	Aspergillus clavatus NRRL 1		36	36
No Yes	Aspergillus nidulans FGSC A4		37	37
No Yes	Tuber melanosporum Vittad	Perigord truffle	37	37
No Yes	Candida dubliniensis CD36		28	28
No Yes	Candida tropicalis MYA-3404		29	29
No Yes	Candida parapsilosis		26	26
No Yes	Candida albicans SC5314		28	28
No Yes	Yarrowia lipolytica CLIB122		29	29
No Yes	Candida lusitaniae ATCC 42720		25	25
No Yes	Vanderwaltozyma polyspora DSM 70294		30	30
No Yes	Candida glabrata CBS138		29	29
No Yes	Kluyveromyces thermotolerans CBS 6340		26	25
No Yes	Lachancea kluyveri		25	25
No Yes	Kluyveromyces waltii		25	25
No Yes	Lodderomyces elongisporus NRRL YB-4239		27	27
No Yes	Ashbya gossypii ATCC 10895		26	26
No Yes	Debaromyces hansenii		27	27
No Yes	Zygosaccharomyces rouxii		26	25
No Yes	Saccharomyces mikatae MIT		31	30
No Yes	Saccharomyces paradoxus MIT		32	31
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	29	29
No Yes	Saccharomyces bayanus MIT		28	27
No Yes	Candida guilliermondii ATCC 6260		35	35
No Yes	Pichia stipitis CBS 6054		28	28
No Yes	Pichia pastoris GS115		24	24
No Yes	Kluyveromyces lactis		25	25
No Yes	Schizosaccharomyces octosporus yFS286		29	29
No Yes	Schizosaccharomyces japonicus yFS275		29	29
No Yes	Schizosaccharomyces pombe	Fission yeast	30	30
No Yes	Allomyces macrogynus ATCC 38327		72	72
No Yes	Rhizopus oryzae RA 99-880		40	40
No Yes	Phycomyces blakesleeanus		43	43
No Yes	Mucor circinelloides		45	45
No Yes	Encephalitozoon intestinalis		8	8
No Yes	Encephalitozoon cuniculi		6	6
No Yes	Spizellomyces punctatus DAOM BR117		36	36
No Yes	Batrachochytrium dendrobatidis JEL423		38	38
No Yes	Dictyostelium discoideum		80	78
No Yes	Dictyostelium purpureum		148	146
No Yes	Entamoeba dispar		61	61
No Yes	Entamoeba invadens		88	88
No Yes	Entamoeba histolytica 1		71	71
No Yes	Arabidopsis lyrata	Lyrate rockcress	192	191
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	141	141
No Yes	Carica papaya	Papaya	95	95
No Yes	Medicago truncatula	Barrel medic	148	148
No Yes	Glycine max	Soybean	219	219
No Yes	Cucumis sativus	Cucumber	161	160
No Yes	Populus trichocarpa 1.1	Black cottonwood	148	148
No Yes	Vitis vinifera	Wine grape	86	85
No Yes	Brachypodium distachyon		205	205
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	1021	1021
No Yes	Zea mays subsp. mays	Maize	314	314
No Yes	Sorghum bicolor	Sorghum	376	374
No Yes	Selaginella moellendorffii		157	157
No Yes	Physcomitrella patens subsp. patens		69	69
No Yes	Coccomyxa sp. C-169		40	40
No Yes	Chlorella sp. NC64A		56	55
No Yes	Chlorella vulgaris		41	41
No Yes	Volvox carteri f. nagariensis		67	65
No Yes	Chlamydomonas reinhardtii 4.0		62	62
No Yes	Ostreococcus sp. RCC809		39	39
No Yes	Ostreococcus lucimarinus CCE9901		38	38
No Yes	Ostreococcus tauri		36	36
No Yes	Micromonas sp. RCC299		42	42
No Yes	Micromonas pusilla CCMP1545		43	42
No Yes	Cyanidioschyzon merolae		23	23
No Yes	Giardia lamblia		42	42
No Yes	Trypanosoma cruzi strain CL Brener		128	123
No Yes	Trypanosoma brucei		65	60
No Yes	Leishmania mexicana		61	59
No Yes	Leishmania major strain Friedlin		69	66
No Yes	Leishmania infantum JPCM5		63	60
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		59	57
No Yes	Aureococcus anophagefferens		95	94
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	90	88
No Yes	Phytophthora sojae 1.1		78	76
No Yes	Phytophthora infestans T30-4		164	162
No Yes	Phytophthora capsici		107	104
No Yes	Phaeodactylum tricornutum		45	45
No Yes	Fragilariopsis cylindrus		100	99
No Yes	Thalassiosira pseudonana		51	51
No Yes	Paramecium tetraurelia		307	304
No Yes	Tetrahymena thermophila SB210 1		234	230
No Yes	Babesia bovis T2Bo		14	14
No Yes	Theileria parva		24	24
No Yes	Theileria annulata		24	24
No Yes	Plasmodium falciparum 3D7		35	35
No Yes	Plasmodium vivax SaI-1		39	39
No Yes	Plasmodium knowlesi strain H		32	32
No Yes	Plasmodium yoelii ssp. yoelii 1		28	28
No Yes	Plasmodium chabaudi		52	52
No Yes	Plasmodium berghei ANKA		37	37
No Yes	Cryptosporidium hominis		17	17
No Yes	Cryptosporidium muris		25	25
No Yes	Cryptosporidium parvum Iowa II		20	20
No Yes	Neospora caninum Nc-Liverpool		38	38
No Yes	Neospora caninum		35	35
No Yes	Toxoplasma gondii ME49		37	37
No Yes	Naegleria gruberi		111	111
No Yes	Trichomonas vaginalis		265	265
No Yes	Emiliania huxleyi CCMP1516		149	148
No Yes	Mycoplasma mycoides ssp. mycoides SC PG1		3	3
No Yes	Mycoplasma capricolum ssp. capricolum ATCC 27343		6	6
No Yes	Mycoplasma crocodyli MP145		1	1
No Yes	Mycoplasma penetrans HF-2		2	2
No Yes	Mycoplasma arthritidis 158L3-1		3	3
No Yes	Mycoplasma agalactiae PG2		3	3
No Yes	Mycoplasma synoviae 53		1	1
No Yes	Mycoplasma hominis		1	1
No Yes	Mycoplasma gallisepticum R		3	3
No Yes	Thermanaerovibrio acidaminovorans DSM 6589		1	1
No Yes	Brachyspira hyodysenteriae WA1		2	2
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis L550		2	2
No Yes	Leptospira interrogans ser. Lai 56601		2	2
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Paris)		7	7
No Yes	Treponema pallidum ssp. pallidum Nichols		1	1
No Yes	Treponema denticola ATCC 35405		6	6
No Yes	Rhodopirellula baltica SH 1		15	15
No Yes	Pirellula staleyi DSM 6068		10	10
No Yes	Gardnerella vaginalis 409-05		5	5
No Yes	Bifidobacterium longum NCC2705		9	9
No Yes	Bifidobacterium animalis ssp. lactis AD011		6	6
No Yes	Bifidobacterium dentium Bd1		10	9
No Yes	Bifidobacterium adolescentis ATCC 15703		8	8
No Yes	Kineococcus radiotolerans SRS30216		5	5
No Yes	Catenulispora acidiphila DSM 44928		23	23
No Yes	Stackebrandtia nassauensis DSM 44728		15	15
No Yes	Acidothermus cellulolyticus 11B		7	7
No Yes	Nakamurella multipartita DSM 44233		13	13
No Yes	Geodermatophilus obscurus DSM 43160		7	7
No Yes	Frankia sp. CcI3		10	10
No Yes	Frankia alni ACN14a		11	11
No Yes	Thermobifida fusca YX		7	7
No Yes	Thermomonospora curvata DSM 43183		14	14
No Yes	Streptosporangium roseum DSM 43021		16	16
No Yes	Streptomyces griseus ssp. griseus NBRC 13350		15	15
No Yes	Streptomyces avermitilis MA-4680		19	19
No Yes	Streptomyces scabiei 87.22		19	19
No Yes	Streptomyces coelicolor A3(2)		16	16
No Yes	Actinosynnema mirum DSM 43827		11	11
No Yes	Saccharomonospora viridis DSM 43017		8	8
No Yes	Saccharopolyspora erythraea NRRL 2338		7	7
No Yes	Kribbella flavida DSM 17836		11	11
No Yes	Nocardioides sp. JS614		6	6
No Yes	Propionibacterium acnes KPA171202		3	3
No Yes	Salinispora arenicola CNS-205		12	12
No Yes	Salinispora tropica CNB-440		9	9
No Yes	Gordonia bronchialis DSM 43247		9	9
No Yes	Rhodococcus jostii RHA1		12	12
No Yes	Rhodococcus opacus B4		13	13
No Yes	Rhodococcus erythropolis PR4		10	10
No Yes	Nocardia farcinica IFM 10152		9	9
No Yes	Mycobacterium abscessus		14	14
No Yes	Mycobacterium sp. MCS		16	16
No Yes	Mycobacterium avium ssp. paratuberculosis K-10		9	9
No Yes	Mycobacterium vanbaalenii PYR-1		19	19
No Yes	Mycobacterium tuberculosis H37Rv		12	12
No Yes	Mycobacterium bovis AF2122/97		11	11
No Yes	Mycobacterium ulcerans Agy99		10	10
No Yes	Mycobacterium gilvum PYR-GCK		21	21
No Yes	Mycobacterium marinum M		12	12
No Yes	Mycobacterium smegmatis MC2 155		10	10
No Yes	Mycobacterium leprae TN		7	7
No Yes	Corynebacterium aurimucosum		6	6
No Yes	Corynebacterium kroppenstedtii DSM 44385		6	6
No Yes	Corynebacterium efficiens YS-314		4	4
No Yes	Corynebacterium urealyticum DSM 7109		4	4
No Yes	Corynebacterium jeikeium K411		4	4
No Yes	Corynebacterium glutamicum ATCC 13032 Kitasato		4	4
No Yes	Corynebacterium diphtheriae NCTC 13129		4	4
No Yes	Tropheryma whipplei Twist		2	2
No Yes	Sanguibacter keddieii DSM 10542		4	4
No Yes	Kytococcus sedentarius DSM 20547		4	4
No Yes	Beutenbergia cavernae DSM 12333		8	7
No Yes	Leifsonia xyli ssp. xyli CTCB07		3	3
No Yes	Clavibacter michiganensis ssp. michiganensis NCPPB 382		6	6
No Yes	Jonesia denitrificans DSM 20603		6	6
No Yes	Brachybacterium faecium DSM 4810		10	10
No Yes	Xylanimonas cellulosilytica DSM 15894		7	7
No Yes	Kocuria rhizophila DC2201		4	4
No Yes	Rothia mucilaginosa DY-18		1	1
No Yes	Arthrobacter sp. FB24		8	8
No Yes	Arthrobacter chlorophenolicus A6		9	9
No Yes	Arthrobacter aurescens TC1		7	7
No Yes	Renibacterium salmoninarum ATCC 33209		10	10
No Yes	Micrococcus luteus NCTC 2665		1	1
No Yes	Cryptobacterium curtum DSM 15641		2	2
No Yes	Eggerthella lenta DSM 2243		8	8
No Yes	Slackia heliotrinireducens DSM 20476		12	12
No Yes	Atopobium parvulum DSM 20469		4	4
No Yes	Conexibacter woesei DSM 14684		6	6
No Yes	Rubrobacter xylanophilus DSM 9941		3	3
No Yes	Acidimicrobium ferrooxidans DSM 10331		4	4
No Yes	Denitrovibrio acetiphilus DSM 12809		3	3
No Yes	Deferribacter desulfuricans SSM1		1	1
No Yes	Kosmotoga olearia TBF 19.5.1		5	5
No Yes	Petrotoga mobilis SJ95		2	2
No Yes	Fervidobacterium nodosum Rt17-B1		3	3
No Yes	Thermosipho melanesiensis BI429		3	3
No Yes	Thermosipho africanus TCF52B		2	2
No Yes	Thermotoga lettingae TMO		3	3
No Yes	Thermotoga sp. RQ2		1	1
No Yes	Thermotoga naphthophila RKU-10		1	1
No Yes	Thermotoga petrophila RKU-1		1	1
No Yes	Thermotoga neapolitana DSM 4359		1	1
No Yes	Thermotoga maritima MSB8		1	1
No Yes	Dehalococcoides ethenogenes 195		1	1
No Yes	Thermomicrobium roseum DSM 5159		2	2
No Yes	Sphaerobacter thermophilus DSM 20745		3	3
No Yes	Herpetosiphon aurantiacus ATCC 23779		10	10
No Yes	Roseiflexus sp. RS-1		7	7
No Yes	Roseiflexus castenholzii DSM 13941		6	6
No Yes	Chloroflexus sp. Y-400-fl		5	5
No Yes	Chloroflexus aggregans DSM 9485		4	4
No Yes	Chloroflexus aurantiacus J-10-fl		5	5
No Yes	Sulfurihydrogenibium sp. YO3AOP1		2	2
No Yes	Sulfurihydrogenibium azorense Az-Fu1		2	2
No Yes	Persephonella marina EX-H1		3	3
No Yes	Hydrogenobaculum sp. Y04AAS1		3	3
No Yes	Thermocrinis albus DSM 14484		2	2
No Yes	Aquifex aeolicus VF5		2	2
No Yes	Hydrogenobacter thermophilus TK-6		4	4
No Yes	Gemmatimonas aurantiaca T-27		3	3
No Yes	Fibrobacter succinogenes ssp. succinogenes S85		4	4
No Yes	Candidatus Koribacter versatilis Ellin345		6	6
No Yes	Candidatus Solibacter usitatus Ellin6076		4	4
No Yes	Acidobacterium capsulatum ATCC 51196		2	2
No Yes	Pelodictyon phaeoclathratiforme BU-1		5	5
No Yes	Pelodictyon luteolum DSM 273		3	3
No Yes	Chlorobium chlorochromatii CaD3		3	3
No Yes	Chlorobium phaeobacteroides DSM 266		5	5
No Yes	Chlorobium phaeovibrioides DSM 265		2	2
No Yes	Chlorobium limicola DSM 245		4	4
No Yes	Chlorobaculum parvum NCIB 8327		4	4
No Yes	Chlorobium tepidum TLS		3	3
No Yes	Chloroherpeton thalassium ATCC 35110		2	2
No Yes	Prosthecochloris aestuarii DSM 271		4	4
No Yes	Prevotella ruminicola 23		10	10
No Yes	Parabacteroides distasonis ATCC 8503		8	8
No Yes	Porphyromonas gingivalis W83		7	7
No Yes	Bacteroides vulgatus ATCC 8482		8	8
No Yes	Bacteroides thetaiotaomicron VPI-5482		14	14
No Yes	Bacteroides fragilis NCTC 9343		17	17
No Yes	Candidatus Amoebophilus asiaticus 5a2		3	3
No Yes	Salinibacter ruber DSM 13855		1	1
No Yes	Rhodothermus marinus DSM 4252		2	2
No Yes	Chitinophaga pinensis DSM 2588		13	13
No Yes	Dyadobacter fermentans DSM 18053		16	16
No Yes	Cytophaga hutchinsonii ATCC 33406		6	6
No Yes	Spirosoma linguale DSM 74		11	11
No Yes	Pedobacter heparinus DSM 2366		8	8
No Yes	Zunongwangia profunda SM-A87		6	6
No Yes	Gramella forsetii KT0803		4	4
No Yes	Robiginitalea biformata HTCC2501		5	5
No Yes	Flavobacteriaceae bacterium 3519-10		3	3
No Yes	Capnocytophaga ochracea DSM 7271		3	3
No Yes	Flavobacterium psychrophilum JIP02/86		4	4
No Yes	Flavobacterium johnsoniae UW101		10	10
No Yes	Blattabacterium sp. Bge		1	1
No Yes	Dictyoglomus turgidum DSM 6724		1	1
No Yes	Dictyoglomus thermophilum H-6-12		2	2
No Yes	Candidatus Protochlamydia amoebophila UWE25		3	3
No Yes	Chlamydophila pneumoniae TW-183		2	2
No Yes	Chlamydophila caviae GPIC		3	3
No Yes	Chlamydophila felis Fe/C-56		3	3
No Yes	Chlamydophila abortus S26/3		3	3
No Yes	Chlamydia muridarum Nigg		3	3
No Yes	Chlamydia trachomatis D/UW-3/CX		3	3
No Yes	Coraliomargarita akajimensis DSM 45221		3	3
No Yes	Opitutus terrae PB90-1		6	6
No Yes	Methylacidiphilum infernorum V4		4	4
No Yes	Akkermansia muciniphila ATCC BAA-835		5	5
No Yes	Thermodesulfovibrio yellowstonii DSM 11347		4	4
No Yes	Streptobacillus moniliformis DSM 12112		5	5
No Yes	Sebaldella termitidis ATCC 33386		3	3
No Yes	Leptotrichia buccalis DSM 1135		4	4
No Yes	Fusobacterium nucleatum ssp. nucleatum ATCC 25586		1	1
No Yes	Thermobaculum terrenum ATCC BAA-798		5	5
No Yes	Deinococcus deserti VCD115		5	5
No Yes	Deinococcus geothermalis DSM 11300		4	4
No Yes	Deinococcus radiodurans R1		6	6
No Yes	Meiothermus ruber DSM 1279		2	2
No Yes	Thermus thermophilus HB27 (First sequenced)		1	1
No Yes	Natranaerobius thermophilus JW/NM-WN-LF		2	2
No Yes	Symbiobacterium thermophilum IAM 14863		1	1
No Yes	Anaerococcus prevotii DSM 20548		6	6
No Yes	Finegoldia magna ATCC 29328		6	6
No Yes	Clostridiales genomosp. BVAB3 UPII9-5		4	4
No Yes	Anaerocellum thermophilum DSM 6725		3	3
No Yes	Candidatus Desulforudis audaxviator MP104C		1	1
No Yes	Pelotomaculum thermopropionicum SI		1	1
No Yes	Desulfitobacterium hafniense Y51		10	10
No Yes	Desulfotomaculum reducens MI-1		2	2
No Yes	Desulfotomaculum acetoxidans DSM 771		3	3
No Yes	Eubacterium rectale ATCC 33656		17	17
No Yes	Eubacterium eligens ATCC 27750		5	5
No Yes	Syntrophomonas wolfei ssp. wolfei Goettingen		5	5
No Yes	Heliobacterium modesticaldum Ice1		2	2
No Yes	Alkaliphilus oremlandii OhILAs		3	3
No Yes	Alkaliphilus metalliredigens QYMF		5	5
No Yes	Clostridium phytofermentans ISDg		15	15
No Yes	Clostridium novyi NT		8	8
No Yes	Clostridium kluyveri DSM 555		5	5
No Yes	Clostridium cellulolyticum H10		15	14
No Yes	Clostridium beijerinckii NCIMB 8052		14	14
No Yes	Clostridium thermocellum ATCC 27405		6	6
No Yes	Clostridium tetani E88		8	8
No Yes	Clostridium perfringens 13		4	4
No Yes	Clostridium difficile 630		20	20
No Yes	Clostridium botulinum A ATCC 3502		6	5
No Yes	Clostridium acetobutylicum ATCC 824		9	9
No Yes	Veillonella parvula DSM 2008		1	1
No Yes	Acidaminococcus fermentans DSM 20731		4	4
No Yes	Caldicellulosiruptor saccharolyticus DSM 8903		3	3
No Yes	Coprothermobacter proteolyticus DSM 5265		1	1
No Yes	Carboxydothermus hydrogenoformans Z-2901		3	3
No Yes	Moorella thermoacetica ATCC 39073		2	2
No Yes	Ammonifex degensii KC4		3	3
No Yes	Thermoanaerobacter pseudethanolicus ATCC 33223		4	4
No Yes	Thermoanaerobacter sp. X514		4	4
No Yes	Thermoanaerobacter tengcongensis MB4		4	4
No Yes	Thermoanaerobacter italicus Ab9		3	3
No Yes	Halothermothrix orenii H 168		2	2
No Yes	Enterococcus faecalis V583		13	12
No Yes	Oenococcus oeni PSU-1		5	5
No Yes	Leuconostoc citreum KM20		3	3
No Yes	Leuconostoc mesenteroides ssp. mesenteroides ATCC 8293		5	5
No Yes	Lactobacillus casei ATCC 334		7	7
No Yes	Lactobacillus crispatus ST1		9	9
No Yes	Lactobacillus rhamnosus GG		6	6
No Yes	Lactobacillus johnsonii NCC 533		7	7
No Yes	Lactobacillus salivarius UCC118		2	2
No Yes	Lactobacillus fermentum IFO 3956		4	4
No Yes	Lactobacillus sakei ssp. sakei 23K		7	7
No Yes	Lactobacillus reuteri DSM 20016		8	8
No Yes	Lactobacillus gasseri ATCC 33323		5	5
No Yes	Lactobacillus plantarum WCFS1		6	6
No Yes	Lactobacillus helveticus DPC 4571		7	7
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842		9	9
No Yes	Lactobacillus brevis ATCC 367		8	8
No Yes	Lactobacillus acidophilus NCFM		9	9
No Yes	Pediococcus pentosaceus ATCC 25745		3	3
No Yes	Lactococcus lactis ssp. lactis Il1403		9	9
No Yes	Streptococcus gallolyticus UCN34		8	8
No Yes	Streptococcus equi ssp. zooepidemicus MGCS10565		8	8
No Yes	Streptococcus dysgalactiae ssp. equisimilis GGS_124		9	9
No Yes	Streptococcus mitis B6		5	5
No Yes	Streptococcus uberis 0140J		3	3
No Yes	Streptococcus pyogenes M1 GAS		9	9
No Yes	Streptococcus pneumoniae TIGR4 (Virulent)		3	3
No Yes	Streptococcus agalactiae NEM316		10	10
No Yes	Streptococcus mutans UA159		5	5
No Yes	Streptococcus thermophilus LMG 18311 (Older strain)		5	5
No Yes	Streptococcus suis 05ZYH33		8	8
No Yes	Streptococcus sanguinis SK36		7	7
No Yes	Streptococcus gordonii Challis subCH1		5	5
No Yes	Exiguobacterium sp. AT1b		6	6
No Yes	Exiguobacterium sibiricum 255-15		7	7
No Yes	Bacillus tusciae DSM 2912		5	5
No Yes	Alicyclobacillus acidocaldarius ssp. acidocaldarius DSM 446		8	8
No Yes	Brevibacillus brevis NBRC 100599		10	9
No Yes	Paenibacillus sp. JDR-2		15	14
No Yes	Listeria welshimeri ser. 6b SLCC5334		9	9
No Yes	Listeria innocua Clip11262		8	8
No Yes	Listeria seeligeri ser. 1/2b SLCC3954		7	7
No Yes	Listeria monocytogenes EGD-e		7	7
No Yes	Lysinibacillus sphaericus C3-41		14	12
No Yes	Oceanobacillus iheyensis HTE831		6	6
No Yes	Anoxybacillus flavithermus WK1		3	3
No Yes	Geobacillus sp. WCH70		6	6
No Yes	Geobacillus thermodenitrificans NG80-2		5	5
No Yes	Geobacillus kaustophilus HTA426		4	4
No Yes	Bacillus subtilis ssp. subtilis 168		11	9
No Yes	Bacillus licheniformis ATCC 14580		10	8
No Yes	Bacillus amyloliquefaciens FZB42		10	8
No Yes	Bacillus halodurans C-125		5	5
No Yes	Bacillus weihenstephanensis KBAB4		9	9
No Yes	Bacillus thuringiensis ser. konkukian 97-27		11	11
No Yes	Bacillus cereus ATCC 14579		11	11
No Yes	Bacillus anthracis Ames Ancestor		9	9
No Yes	Bacillus pseudofirmus OF4		16	7
No Yes	Bacillus clausii KSM-K16		6	6
No Yes	Bacillus pumilus SAFR-032		9	7
No Yes	Bacillus megaterium QM B1551		17	15
No Yes	Macrococcus caseolyticus JCSC5402		6	6
No Yes	Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305		7	7
No Yes	Staphylococcus lugdunensis HKU09-01		14	14
No Yes	Staphylococcus haemolyticus JCSC1435		13	13
No Yes	Staphylococcus epidermidis RP62A		13	13
No Yes	Staphylococcus carnosus ssp. carnosus TM300		9	9
No Yes	Staphylococcus aureus ssp. aureus NCTC 8325		18	18
No Yes	Nautilia profundicola AmH		1	1
No Yes	Sulfurospirillum deleyianum DSM 6946		2	2
No Yes	Arcobacter butzleri RM4018		7	7
No Yes	Campylobacter hominis ATCC BAA-381		2	2
No Yes	Campylobacter curvus 525.92		3	3
No Yes	Campylobacter concisus 13826		3	3
No Yes	Campylobacter jejuni ssp. jejuni NCTC 11168		2	2
No Yes	Campylobacter fetus ssp. fetus 82-40		1	1
No Yes	Sulfurimonas denitrificans DSM 1251		2	2
No Yes	Wolinella succinogenes DSM 1740		1	1
No Yes	Helicobacter hepaticus ATCC 51449		2	2
No Yes	Helicobacter mustelae 12198		2	2
No Yes	Helicobacter acinonychis Sheeba		1	1
No Yes	Helicobacter pylori 26695		1	1
No Yes	Sulfurovum sp. NBC37-1		6	6
No Yes	Bdellovibrio bacteriovorus HD100		7	7
No Yes	Syntrophus aciditrophicus SB		6	6
No Yes	Syntrophobacter fumaroxidans MPOB		9	9
No Yes	Desulfotalea psychrophila LSv54		2	2
No Yes	Desulfatibacillum alkenivorans AK-01		7	7
No Yes	Desulfobacterium autotrophicum HRM2		8	8
No Yes	Desulfococcus oleovorans Hxd3		4	4
No Yes	Desulfomicrobium baculatum DSM 4028		7	7
No Yes	Lawsonia intracellularis PHE/MN1-00		3	3
No Yes	Desulfovibrio magneticus RS-1		10	10
No Yes	Desulfovibrio vulgaris Hildenborough		5	5
No Yes	Desulfovibrio salexigens DSM 2638		3	3
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans G20		2	2
No Yes	Pelobacter propionicus DSM 2379		10	10
No Yes	Pelobacter carbinolicus DSM 2380		4	4
No Yes	Geobacter uraniireducens Rf4		12	12
No Yes	Geobacter sp. FRC-32		12	12
No Yes	Geobacter lovleyi SZ		14	14
No Yes	Geobacter bemidjiensis Bem		9	9
No Yes	Geobacter sulfurreducens PCA		7	7
No Yes	Geobacter metallireducens GS-15		8	8
No Yes	Haliangium ochraceum DSM 14365		11	11
No Yes	Sorangium cellulosum So ce 56		13	13
No Yes	Anaeromyxobacter sp. Fw109-5		7	7
No Yes	Anaeromyxobacter dehalogenans 2CP-C		9	9
No Yes	Myxococcus xanthus DK 1622		10	10
No Yes	Magnetococcus sp. MC-1		2	2
No Yes	Sideroxydans lithotrophicus ES-1		2	2
No Yes	Aromatoleum aromaticum EbN1		6	6
No Yes	Dechloromonas aromatica RCB		10	10
No Yes	Thauera sp. MZ1T		7	7
No Yes	Laribacter hongkongensis HLHK9		4	4
No Yes	Chromobacterium violaceum ATCC 12472		5	5
No Yes	Neisseria meningitidis Z2491		2	2
No Yes	Neisseria gonorrhoeae FA 1090		3	3
No Yes	Methylotenera mobilis JLW8		2	2
No Yes	Methylovorus sp. SIP3-4		8	8
No Yes	Methylobacillus flagellatus KT		4	4
No Yes	Thiobacillus denitrificans ATCC 25259		1	1
No Yes	Candidatus Accumulibacter phosphatis clade IIA UW-1		12	12
No Yes	Methylibium petroleiphilum PM1		9	9
No Yes	Leptothrix cholodnii SP-6		7	7
No Yes	Ralstonia eutropha JMP134		8	8
No Yes	Cupriavidus taiwanensis		5	5
No Yes	Ralstonia metallidurans CH34		6	6
No Yes	Ralstonia pickettii 12J		4	4
No Yes	Ralstonia solanacearum GMI1000		6	6
No Yes	Polynucleobacter necessarius ssp. asymbioticus QLW-P1DMWA-1		7	7
No Yes	Burkholderia phytofirmans PsJN		14	14
No Yes	Burkholderia phymatum STM815		8	8
No Yes	Burkholderia thailandensis E264		11	11
No Yes	Burkholderia pseudomallei K96243		10	10
No Yes	Burkholderia mallei ATCC 23344		9	9
No Yes	Burkholderia sp. 383		10	10
No Yes	Burkholderia ambifaria AMMD		9	9
No Yes	Burkholderia cenocepacia AU 1054		7	7
No Yes	Burkholderia multivorans ATCC 17616		9	9
No Yes	Burkholderia vietnamiensis G4		9	9
No Yes	Burkholderia xenovorans LB400		13	13
No Yes	Burkholderia glumae BGR1		7	7
No Yes	Verminephrobacter eiseniae EF01-2		6	6
No Yes	Delftia acidovorans SPH-1		8	8
No Yes	Polaromonas sp. JS666		8	8
No Yes	Polaromonas naphthalenivorans CJ2		13	13
No Yes	Variovorax paradoxus S110		9	9
No Yes	Rhodoferax ferrireducens T118		5	5
No Yes	Diaphorobacter sp. TPSY		3	3
No Yes	Acidovorax sp. JS42		4	4
No Yes	Acidovorax citrulli AAC00-1		7	7
No Yes	Comamonas sp. CNB-1		4	4
No Yes	Herminiimonas arsenicoxydans		3	3
No Yes	Janthinobacterium sp. Marseille		4	4
No Yes	Bordetella petrii DSM 12804		3	3
No Yes	Bordetella avium 197N		2	2
No Yes	Bordetella pertussis Tohama I		4	4
No Yes	Bordetella parapertussis 12822		3	3
No Yes	Bordetella bronchiseptica RB50		6	6
No Yes	Nitrosospira multiformis ATCC 25196		2	2
No Yes	Nitrosomonas eutropha C91		3	3
No Yes	Nitrosomonas europaea ATCC 19718		3	3
No Yes	Caulobacter sp. K31		13	13
No Yes	Caulobacter crescentus CB15		5	5
No Yes	Caulobacter segnis ATCC 21756		8	8
No Yes	Phenylobacterium zucineum HLK1		4	4
No Yes	Erythrobacter litoralis HTCC2594		4	4
No Yes	Sphingopyxis alaskensis RB2256		6	6
No Yes	Novosphingobium aromaticivorans DSM 12444		7	7
No Yes	Sphingobium japonicum UT26S		10	10
No Yes	Sphingomonas wittichii RW1		9	9
No Yes	Zymomonas mobilis ssp. mobilis ZM4		1	1
No Yes	Maricaulis maris MCS10		4	4
No Yes	Hirschia baltica ATCC 49814		6	6
No Yes	Hyphomonas neptunium ATCC 15444		4	4
No Yes	Dinoroseobacter shibae DFL 12		6	6
No Yes	Jannaschia sp. CCS1		6	6
No Yes	Ruegeria sp. TM1040		4	4
No Yes	Ruegeria pomeroyi DSS-3		3	3
No Yes	Roseobacter denitrificans OCh 114		4	4
No Yes	Rhodobacter sphaeroides 2.4.1		7	7
No Yes	Rhodobacter capsulatus SB1003		8	8
No Yes	Paracoccus denitrificans PD1222		5	5
No Yes	Magnetospirillum magneticum AMB-1		8	8
No Yes	Rhodospirillum centenum SW		4	4
No Yes	Rhodospirillum rubrum ATCC 11170		7	7
No Yes	Azospirillum sp. B510		5	5
No Yes	Granulibacter bethesdensis CGDNIH1		7	7
No Yes	Gluconacetobacter diazotrophicus PAl 5		6	6
No Yes	Gluconobacter oxydans 621H		3	3
No Yes	Acetobacter pasteurianus IFO 3283-01		3	3
No Yes	alpha proteobacterium IMCC1322		2	2
No Yes	Candidatus Pelagibacter ubique HTCC1062		1	1
No Yes	Rickettsia bellii RML369-C		4	4
No Yes	Rickettsia canadensis McKiel		1	1
No Yes	Rickettsia peacockii Rustic		1	1
No Yes	Rickettsia felis URRWXCal2		2	2
No Yes	Rickettsia massiliae MTU5		2	2
No Yes	Rickettsia africae ESF-5		1	1
No Yes	Rickettsia rickettsii Sheila Smith		1	1
No Yes	Rickettsia conorii Malish 7		1	1
No Yes	Wolbachia endosymbiont of Culex_quinquefasciatus Pel		1	1
No Yes	Wolbachia endosymbiont of Drosophila melanogaster (Genus only)		1	1
No Yes	Wolbachia endosymbiont TRS of Brugia malayi		1	1
No Yes	Xanthobacter autotrophicus Py2		10	10
No Yes	Azorhizobium caulinodans ORS 571		8	8
No Yes	Methylobacterium chloromethanicum CM4		7	7
No Yes	Methylobacterium extorquens PA1		8	8
No Yes	Methylobacterium sp. 4-46		6	6
No Yes	Methylobacterium populi BJ001		9	9
No Yes	Methylobacterium nodulans ORS 2060		17	17
No Yes	Methylobacterium radiotolerans JCM 2831		11	11
No Yes	Ochrobactrum anthropi ATCC 49188		3	3
No Yes	Brucella microti CCM 4915		2	2
No Yes	Brucella canis ATCC 23365		2	2
No Yes	Brucella suis 1330		2	2
No Yes	Brucella melitensis bv. 1 16M		2	2
No Yes	Brucella ovis ATCC 25840		2	2
No Yes	Brucella abortus bv. 1 9-941		2	2
No Yes	Sinorhizobium medicae WSM419		3	3
No Yes	Sinorhizobium meliloti 1021		2	2
No Yes	Rhizobium etli CFN 42		7	7
No Yes	Rhizobium sp. NGR234		6	6
No Yes	Rhizobium leguminosarum bv. viciae 3841		9	9
No Yes	Agrobacterium vitis S4		8	8
No Yes	Agrobacterium radiobacter K84		5	5
No Yes	Agrobacterium tumefaciens C58		5	5
No Yes	Chelativorans sp. BNC1		3	3
No Yes	Parvibaculum lavamentivorans DS-1		4	4
No Yes	Mesorhizobium loti MAFF303099		10	10
No Yes	Methylocella silvestris BL2		8	8
No Yes	Beijerinckia indica ssp. indica ATCC 9039		6	6
No Yes	Oligotropha carboxidovorans OM5		7	7
No Yes	Rhodopseudomonas palustris CGA009		9	9
No Yes	Nitrobacter winogradskyi Nb-255		4	4
No Yes	Nitrobacter hamburgensis X14		3	3
No Yes	Bradyrhizobium sp. ORS278		12	12
No Yes	Bradyrhizobium japonicum USDA 110		17	17
No Yes	Bartonella tribocorum CIP 105476		2	2
No Yes	Bartonella henselae Houston-1		2	2
No Yes	Bartonella grahamii as4aup		2	2
No Yes	Bartonella quintana Toulouse		1	1
No Yes	Bartonella bacilliformis KC583		1	1
No Yes	Acidithiobacillus ferrooxidans ATCC 23270		7	7
No Yes	Mannheimia succiniciproducens MBEL55E		4	4
No Yes	Aggregatibacter aphrophilus NJ8700		5	5
No Yes	Aggregatibacter actinomycetemcomitans D11S-1		3	3
No Yes	Pasteurella multocida ssp. multocida Pm70		4	4
No Yes	Haemophilus parasuis SH0165		4	4
No Yes	Haemophilus ducreyi 35000HP		3	3
No Yes	Haemophilus influenzae Rd KW20		3	3
No Yes	Actinobacillus succinogenes 130Z		5	5
No Yes	Actinobacillus pleuropneumoniae L20		4	4
No Yes	Tolumonas auensis DSM 9187		3	3
No Yes	Aeromonas salmonicida ssp. salmonicida A449		3	3
No Yes	Aeromonas hydrophila ssp. hydrophila ATCC 7966		4	4
No Yes	Aliivibrio salmonicida LFI1238		1	1
No Yes	Vibrio fischeri ES114		1	1
No Yes	Vibrio parahaemolyticus RIMD 2210633		2	2
No Yes	Vibrio harveyi ATCC BAA-1116		4	4
No Yes	Vibrio sp. Ex25		2	2
No Yes	Vibrio splendidus LGP32		1	1
No Yes	Vibrio vulnificus YJ016 (Good annotation)		4	4
No Yes	Vibrio cholerae O1 biov. El Tor N16961		2	2
No Yes	Photobacterium profundum SS9		4	4
No Yes	Psychromonas ingrahamii 37		4	4
No Yes	Shewanella piezotolerans WP3		3	3
No Yes	Shewanella loihica PV-4		1	1
No Yes	Shewanella halifaxensis HAW-EB4		3	3
No Yes	Shewanella sediminis HAW-EB3		6	6
No Yes	Shewanella denitrificans OS217		2	2
No Yes	Shewanella pealeana ATCC 700345		3	3
No Yes	Shewanella oneidensis MR-1		6	6
No Yes	Shewanella baltica OS155		3	3
No Yes	Shewanella woodyi ATCC 51908		4	4
No Yes	Shewanella sp. MR-7		4	4
No Yes	Shewanella amazonensis SB2B		4	4
No Yes	Shewanella violacea DSS12		4	4
No Yes	Shewanella frigidimarina NCIMB 400		3	3
No Yes	Shewanella putrefaciens CN-32		3	3
No Yes	Colwellia psychrerythraea 34H		3	3
No Yes	Pseudoalteromonas atlantica T6c		3	3
No Yes	Pseudoalteromonas haloplanktis TAC125		3	3
No Yes	Teredinibacter turnerae T7901		9	9
No Yes	Saccharophagus degradans 2-40		11	11
No Yes	Marinobacter aquaeolei VT8		5	5
No Yes	Alteromonas macleodii Deep ecotype		3	3
No Yes	Hahella chejuensis KCTC 2396		12	12
No Yes	Alcanivorax borkumensis SK2		4	4
No Yes	Marinomonas sp. MWYL1		7	7
No Yes	Chromohalobacter salexigens DSM 3043		2	2
No Yes	Methylococcus capsulatus Bath		2	2
No Yes	Dichelobacter nodosus VCS1703A		3	3
No Yes	Stenotrophomonas maltophilia R551-3		8	8
No Yes	Xylella fastidiosa 9a5c		4	4
No Yes	Xanthomonas axonopodis pv. citri 306		7	7
No Yes	Xanthomonas albilineans		6	6
No Yes	Xanthomonas oryzae pv. oryzae KACC10331		7	7
No Yes	Xanthomonas campestris pv. campestris ATCC 33913 (Completed 2001)		8	8
No Yes	Halothiobacillus neapolitanus c2		4	4
No Yes	Alkalilimnicola ehrlichii MLHE-1		2	2
No Yes	Thioalkalivibrio sp. HL-EbGR7		4	4
No Yes	Allochromatium vinosum DSM 180		5	5
No Yes	Nitrosococcus halophilus Nc4		1	1
No Yes	Coxiella burnetii RSA 493		2	2
No Yes	Legionella longbeachae NSW150		2	2
No Yes	Legionella pneumophila ssp. pneumophila Philadelphia 1		6	6
No Yes	Kangiella koreensis DSM 16069		3	3
No Yes	Baumannia cicadellinicola Hc		1	1
No Yes	Cronobacter turicensis z3032		8	8
No Yes	Cronobacter sakazakii ATCC BAA-894		8	8
No Yes	Dickeya zeae Ech1591		6	6
No Yes	Dickeya dadantii Ech703		6	6
No Yes	Candidatus Hamiltonella defensa 5AT		2	2
No Yes	Pectobacterium wasabiae WPP163		4	4
No Yes	Pectobacterium atrosepticum SCRI1043		5	5
No Yes	Pectobacterium carotovorum ssp. carotovorum PC1		5	5
No Yes	Sodalis glossinidius morsitans		4	4
No Yes	Pantoea ananatis LMG 20103		6	6
No Yes	Photorhabdus asymbiotica		5	5
No Yes	Photorhabdus luminescens ssp. laumondii TTO1		7	7
No Yes	Edwardsiella ictaluri 93-146		4	4
No Yes	Edwardsiella tarda EIB202		5	5
No Yes	Yersinia pseudotuberculosis IP 32953		5	5
No Yes	Yersinia pestis CO92		6	6
No Yes	Yersinia enterocolitica ssp. enterocolitica 8081		5	5
No Yes	Xenorhabdus bovienii SS-2004		8	8
No Yes	Shigella sonnei Ss046		9	9
No Yes	Shigella flexneri 2a 2457T		7	7
No Yes	Shigella dysenteriae Sd197		6	6
No Yes	Shigella boydii Sb227		6	6
No Yes	Serratia proteamaculans 568		7	7
No Yes	Salmonella enterica ssp. enterica ser. Typhimurium LT2		10	10
No Yes	Proteus mirabilis HI4320		4	4
No Yes	Klebsiella variicola At-22		10	10
No Yes	Klebsiella pneumoniae ssp. pneumoniae MGH 78578		8	8
No Yes	Escherichia fergusonii ATCC 35469		9	9
No Yes	Escherichia coli K-12 subMG1655		8	8
No Yes	Erwinia tasmaniensis Et1/99		4	4
No Yes	Erwinia pyrifoliae Ep1/96		5	5
No Yes	Erwinia amylovora ATCC 49946		6	6
No Yes	Enterobacter sp. 638		7	7
No Yes	Citrobacter rodentium ICC168		6	6
No Yes	Citrobacter koseri ATCC BAA-895		7	7
No Yes	Azotobacter vinelandii DJ		5	5
No Yes	Pseudomonas entomophila L48		5	5
No Yes	Pseudomonas syringae pv. tomato DC3000		10	10
No Yes	Pseudomonas stutzeri A1501		3	3
No Yes	Pseudomonas putida KT2440		5	5
No Yes	Pseudomonas fluorescens Pf-5		14	14
No Yes	Pseudomonas mendocina ymp		10	10
No Yes	Pseudomonas aeruginosa PAO1		11	11
No Yes	Cellvibrio japonicus Ueda107		8	8
No Yes	Psychrobacter sp. PRwf-1		1	1
No Yes	Psychrobacter arcticus 273-4		2	2
No Yes	Psychrobacter cryohalolentis K5		1	1
No Yes	Acinetobacter sp. ADP1		4	4
No Yes	Acinetobacter baumannii ATCC 17978		1	1
No Yes	Francisella philomiragia ssp. philomiragia ATCC 25017		2	2
No Yes	Francisella tularensis ssp. tularensis SCHU S4		1	1
No Yes	Gloeobacter violaceus PCC 7421		5	5
No Yes	Acaryochloris marina MBIC11017		6	6
No Yes	Prochlorococcus marinus MIT 9313		2	2
No Yes	Nostoc punctiforme PCC 73102		4	4
No Yes	Nostoc sp. PCC 7120		8	8
No Yes	Anabaena variabilis ATCC 29413		7	7
No Yes	Trichodesmium erythraeum IMS101		4	4
No Yes	Thermosynechococcus elongatus BP-1		4	4
No Yes	Cyanothece sp. ATCC 51142		4	4
No Yes	Synechocystis sp. PCC 6803		5	5
No Yes	Synechococcus elongatus PCC 6301		4	4
No Yes	Microcystis aeruginosa NIES-843		10	10
No Yes	Candidatus Korarchaeum cryptofilum OPF8		2	2
No Yes	Methanocella paludicola SANAE		2	2
No Yes	Methanosaeta thermophila PT		1	1
No Yes	Methanococcoides burtonii DSM 6242		3	3
No Yes	Methanosarcina acetivorans C2A		9	9
No Yes	Methanosarcina mazei Go1		7	7
No Yes	Methanosarcina barkeri Fusaro		7	7
No Yes	Methanohalophilus mahii DSM 5219		6	5
No Yes	Methanosphaerula palustris E1-9c		6	6
No Yes	Candidatus Methanoregula boonei 6A8		1	1
No Yes	Methanospirillum hungatei JF-1		6	6
No Yes	Methanocorpusculum labreanum Z		2	2
No Yes	Methanoculleus marisnigri JR1		2	2
No Yes	Methanopyrus kandleri AV19		3	3
No Yes	Ferroglobus placidus DSM 10642		1	1
No Yes	Archaeoglobus profundus DSM 5631		1	1
No Yes	Archaeoglobus fulgidus DSM 4304		5	5
No Yes	Thermococcus onnurineus NA1		2	2
No Yes	Thermococcus kodakarensis KOD1		3	3
No Yes	Thermococcus gammatolerans EJ3		1	1
No Yes	Thermococcus sibiricus MM 739		2	2
No Yes	Pyrococcus horikoshii OT3		4	4
No Yes	Pyrococcus abyssi GE5		4	4
No Yes	Pyrococcus furiosus DSM 3638		2	2
No Yes	Picrophilus torridus DSM 9790		1	1
No Yes	Haloquadratum walsbyi DSM 16790		2	2
No Yes	Halomicrobium mukohataei DSM 12286		2	2
No Yes	Halorhabdus utahensis DSM 12940		1	1
No Yes	Haloterrigena turkmenica DSM 5511		1	1
No Yes	Natrialba magadii ATCC 43099		1	1
No Yes	Haloferax volcanii DS2		1	1
No Yes	Haloarcula marismortui ATCC 43049		2	2
No Yes	Methanocaldococcus sp. FS406-22		2	2
No Yes	Methanocaldococcus vulcanius M7		3	3
No Yes	Methanocaldococcus jannaschii DSM 2661		2	2
No Yes	Methanococcus aeolicus Nankai-3		1	1
No Yes	Methanococcus maripaludis S2		2	2
No Yes	Methanococcus vannielii SB		1	1
No Yes	Methanothermobacter thermautotrophicus Delta H		6	6
No Yes	Methanosphaera stadtmanae DSM 3091		4	4
No Yes	Methanobrevibacter ruminantium M1		17	17
No Yes	Methanobrevibacter smithii ATCC 35061		3	3
No Yes	uncultured methanogenic archaeon RC-I		5	5
No Yes	Aciduliprofundum boonei T469		5	5
No Yes	Hyperthermus butylicus DSM 5456		1	1
No Yes	Ignicoccus hospitalis KIN4/I		1	1
No Yes	Staphylothermus marinus F1		1	1
No Yes	Desulfurococcus kamchatkensis 1221n		1	1
No Yes	Metallosphaera sedula DSM 5348		1	1
No Yes	Sulfolobus tokodaii 7		1	1
No Yes	Sulfolobus islandicus Y.N.15.51		1	1
No Yes	Sulfolobus solfataricus P2		2	2
No Yes	Thermofilum pendens Hrk 5		5	5
No Yes	Pyrobaculum calidifontis JCM 11548		1	1
No Yes	Pyrobaculum arsenaticum DSM 13514		1	1
No Yes	Pyrobaculum aerophilum IM2		1	1
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	122	120
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	107	105
No Yes	Cryptococcus neoformans var. grubii H99		30	30
No Yes	Cryptococcus neoformans B-3501A		32	32
No Yes	Ajellomyces dermatitidis ER-3		38	38
No Yes	Histoplasma capsulatum H143		35	35
No Yes	Histoplasma capsulatum H88		37	37
No Yes	Histoplasma capsulatum G186AR		35	35
No Yes	Paracoccidioides brasiliensis Pb01		36	36
No Yes	Paracoccidioides brasiliensis Pb03		36	36
No Yes	Coccidioides posadasii str. Silveira		33	33
No Yes	Coccidioides immitis RMSCC 3703		36	36
No Yes	Coccidioides immitis RMSCC 2394		35	35
No Yes	Coccidioides immitis H538.4		33	33
No Yes	Aspergillus fumigatus A1163		38	38
No Yes	Candida albicans WO-1		27	27
No Yes	Saccharomyces cerevisiae YJM789		30	30
No Yes	Saccharomyces cerevisiae RM11-1a		28	28
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	29	29
No Yes	Schizosaccharomyces pombe 972h-		30	30
No Yes	Batrachochytrium dendrobatidis JAM81		38	38
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	298	296
No Yes	Plasmodium falciparum HB3		37	37
No Yes	Plasmodium falciparum Dd2		31	31
No Yes	Mycoplasma agalactiae		4	4
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis JB197		2	2
No Yes	Leptospira interrogans ser. Copenhageni Fiocruz L1-130		2	2
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Ames)		7	7
No Yes	Treponema pallidum ssp. pallidum SS14		1	1
No Yes	Bifidobacterium longum ssp. infantis ATCC 15697		11	11
No Yes	Bifidobacterium longum		10	10
No Yes	Bifidobacterium animalis ssp. lactis Bl-04		6	6
No Yes	Bifidobacterium animalis ssp. lactis DSM 10140		6	6
No Yes	Frankia sp. EAN1pec		24	24
No Yes	Propionibacterium acnes SK137		3	3
No Yes	Mycobacterium sp. KMS		16	16
No Yes	Mycobacterium sp. JLS		20	20
No Yes	Mycobacterium avium 104		8	8
No Yes	Mycobacterium tuberculosis KZN 1435		12	12
No Yes	Mycobacterium tuberculosis H37Ra		12	12
No Yes	Mycobacterium tuberculosis F11		12	12
No Yes	Mycobacterium tuberculosis CDC1551		12	12
No Yes	Mycobacterium bovis BCG Tokyo 172		11	11
No Yes	Mycobacterium bovis BCG Pasteur 1173P2		11	11
No Yes	Mycobacterium leprae Br4923		7	7
No Yes	Corynebacterium glutamicum R		4	4
No Yes	Corynebacterium glutamicum ATCC 13032 Bielefeld		4	4
No Yes	Tropheryma whipplei TW08/27		2	2
No Yes	Clavibacter michiganensis ssp. sepedonicus		6	6
No Yes	Chlorobium phaeobacteroides BS1		4	4
No Yes	Porphyromonas gingivalis ATCC 33277		7	7
No Yes	Bacteroides fragilis YCH46		16	16
No Yes	Salinibacter ruber		2	2
No Yes	Blattabacterium sp. BPLAN		1	1
No Yes	Chlamydophila pneumoniae J138		2	2
No Yes	Chlamydophila pneumoniae CWL029		2	2
No Yes	Chlamydophila pneumoniae AR39		2	2
No Yes	Chlamydia trachomatis B/TZ1A828/OT		3	3
No Yes	Chlamydia trachomatis B/Jali20/OT		3	3
No Yes	Chlamydia trachomatis L2b/UCH-1/proctitis		3	3
No Yes	Chlamydia trachomatis 434/Bu		3	3
No Yes	Chlamydia trachomatis A/HAR-13		3	3
No Yes	Thermus thermophilus HB8		1	1
No Yes	Desulfitobacterium hafniense DCB-2		6	6
No Yes	Clostridium kluyveri NBRC 12016		5	5
No Yes	Clostridium perfringens SM101		3	3
No Yes	Clostridium perfringens ATCC 13124		3	3
No Yes	Clostridium difficile R20291		14	14
No Yes	Clostridium difficile CD196		13	13
No Yes	Clostridium botulinum F Langeland		8	7
No Yes	Clostridium botulinum E3 Alaska E43		6	6
No Yes	Clostridium botulinum B1 Okra		7	6
No Yes	Clostridium botulinum Ba4 657		8	7
No Yes	Clostridium botulinum B Eklund 17B		8	8
No Yes	Clostridium botulinum A2 Kyoto		12	10
No Yes	Clostridium botulinum A3 Loch Maree		9	8
No Yes	Clostridium botulinum A Hall		5	4
No Yes	Clostridium botulinum A ATCC 19397		5	4
No Yes	Lactobacillus casei BL23		7	7
No Yes	Lactobacillus rhamnosus Lc 705		6	6
No Yes	Lactobacillus johnsonii FI9785		9	9
No Yes	Lactobacillus reuteri JCM 1112		8	8
No Yes	Lactobacillus plantarum JDM1		7	7
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC BAA-365		8	8
No Yes	Lactococcus lactis ssp. lactis KF147		10	10
No Yes	Lactococcus lactis ssp. cremoris MG1363		9	9
No Yes	Lactococcus lactis ssp. cremoris SK11		7	7
No Yes	Streptococcus equi ssp. equi 4047		11	11
No Yes	Streptococcus equi ssp. zooepidemicus		8	8
No Yes	Streptococcus pyogenes MGAS10750		13	13
No Yes	Streptococcus pyogenes MGAS10270		11	11
No Yes	Streptococcus pyogenes MGAS2096		12	12
No Yes	Streptococcus pyogenes MGAS9429		10	10
No Yes	Streptococcus pyogenes MGAS6180		9	9
No Yes	Streptococcus pyogenes NZ131		10	10
No Yes	Streptococcus pyogenes MGAS8232		11	11
No Yes	Streptococcus pyogenes MGAS10394		12	12
No Yes	Streptococcus pyogenes Manfredo		10	10
No Yes	Streptococcus pyogenes MGAS315		13	13
No Yes	Streptococcus pyogenes SSI-1		14	14
No Yes	Streptococcus pyogenes MGAS5005		13	13
No Yes	Streptococcus pneumoniae ATCC 700669		5	5
No Yes	Streptococcus pneumoniae CGSP14		5	5
No Yes	Streptococcus pneumoniae G54		5	5
No Yes	Streptococcus pneumoniae P1031		5	5
No Yes	Streptococcus pneumoniae JJA		3	3
No Yes	Streptococcus pneumoniae 70585		4	4
No Yes	Streptococcus pneumoniae Hungary19A-6		5	5
No Yes	Streptococcus pneumoniae Taiwan19F-14		4	4
No Yes	Streptococcus pneumoniae D39		3	3
No Yes	Streptococcus pneumoniae R6 (Non-virulent)		3	3
No Yes	Streptococcus agalactiae A909		5	5
No Yes	Streptococcus agalactiae 2603V/R		9	9
No Yes	Streptococcus mutans NN2025		4	4
No Yes	Streptococcus thermophilus LMD-9		4	4
No Yes	Streptococcus thermophilus CNRZ1066 (Younger strain)		5	5
No Yes	Streptococcus suis BM407		9	9
No Yes	Streptococcus suis SC84		8	8
No Yes	Streptococcus suis 98HAH33		9	9
No Yes	Streptococcus suis P1/7		6	6
No Yes	Listeria monocytogenes 08-5578		7	7
No Yes	Listeria monocytogenes 08-5923		7	7
No Yes	Listeria monocytogenes Clip80459		5	5
No Yes	Listeria monocytogenes HCC23		6	6
No Yes	Listeria monocytogenes 4b F2365		5	5
No Yes	Geobacillus sp. Y412MC61		4	4
No Yes	Geobacillus sp. Y412MC10		13	12
No Yes	Bacillus licheniformis ATCC 14580		10	8
No Yes	Bacillus cytotoxicus NVH 391-98		7	7
No Yes	Bacillus thuringiensis Al Hakam		10	10
No Yes	Bacillus cereus 03BB102		10	10
No Yes	Bacillus cereus AH820		11	11
No Yes	Bacillus cereus AH187		11	11
No Yes	Bacillus cereus B4264		11	11
No Yes	Bacillus cereus G9842		10	10
No Yes	Bacillus cereus Q1		10	10
No Yes	Bacillus cereus E33L		11	11
No Yes	Bacillus cereus ATCC 10987		10	10
No Yes	Bacillus anthracis A0248		10	10
No Yes	Bacillus anthracis CDC 684		11	11
No Yes	Bacillus anthracis Sterne		11	11
No Yes	Bacillus anthracis Ames		9	9
No Yes	Bacillus megaterium DSM319		16	14
No Yes	Staphylococcus epidermidis ATCC 12228		13	13
No Yes	Staphylococcus aureus RF122		15	15
No Yes	Staphylococcus aureus ssp. aureus ED98		19	19
No Yes	Staphylococcus aureus ssp. aureus Newman		21	21
No Yes	Staphylococcus aureus ssp. aureus Mu3		18	18
No Yes	Staphylococcus aureus ssp. aureus USA300_TCH1516		17	17
No Yes	Staphylococcus aureus ssp. aureus USA300_FPR3757		17	17
No Yes	Staphylococcus aureus ssp. aureus JH1		19	19
No Yes	Staphylococcus aureus ssp. aureus JH9		19	19
No Yes	Staphylococcus aureus ssp. aureus MSSA476		16	16
No Yes	Staphylococcus aureus ssp. aureus MRSA252		17	17
No Yes	Staphylococcus aureus ssp. aureus MW2		16	16
No Yes	Staphylococcus aureus ssp. aureus N315		15	15
No Yes	Staphylococcus aureus ssp. aureus Mu50		18	18
No Yes	Staphylococcus aureus ssp. aureus COL		16	16
No Yes	Campylobacter jejuni RM1221		2	2
No Yes	Campylobacter jejuni ssp. jejuni 81116		2	2
No Yes	Campylobacter jejuni ssp. jejuni 81-176		2	2
No Yes	Campylobacter jejuni ssp. doylei 269.97		1	1
No Yes	Helicobacter pylori B38		1	1
No Yes	Helicobacter pylori P12		1	1
No Yes	Helicobacter pylori G27		1	1
No Yes	Helicobacter pylori Shi470		1	1
No Yes	Helicobacter pylori HPAG1		1	1
No Yes	Helicobacter pylori J99		1	1
No Yes	Desulfovibrio vulgaris DP4		3	3
No Yes	Desulfovibrio vulgaris Miyazaki F		3	3
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans ATCC 27774		4	4
No Yes	Geobacter sp. M21		8	8
No Yes	Anaeromyxobacter sp. K		8	8
No Yes	Anaeromyxobacter dehalogenans 2CP-1		8	8
No Yes	Azoarcus sp. BH72		8	8
No Yes	Neisseria meningitidis alpha14		3	3
No Yes	Neisseria meningitidis 053442		2	2
No Yes	Neisseria meningitidis FAM18		3	3
No Yes	Neisseria meningitidis MC58		2	2
No Yes	Neisseria gonorrhoeae NCCP11945		3	3
No Yes	Ralstonia eutropha H16		6	6
No Yes	Ralstonia pickettii 12D		4	4
No Yes	Polynucleobacter necessarius ssp. necessarius STIR1		1	1
No Yes	Burkholderia sp. CCGE1002		10	10
No Yes	Burkholderia pseudomallei MSHR346		4	4
No Yes	Burkholderia pseudomallei 1106a		10	10
No Yes	Burkholderia pseudomallei 668		10	10
No Yes	Burkholderia pseudomallei 1710b		12	12
No Yes	Burkholderia mallei NCTC 10229		9	9
No Yes	Burkholderia mallei NCTC 10247		9	9
No Yes	Burkholderia mallei SAVP1		9	9
No Yes	Burkholderia ambifaria MC40-6		9	9
No Yes	Burkholderia cenocepacia MC0-3		8	8
No Yes	Burkholderia cenocepacia HI2424		8	8
No Yes	Burkholderia cenocepacia J2315		8	8
No Yes	Burkholderia multivorans ATCC 17616		9	9
No Yes	Caulobacter crescentus NA1000		5	5
No Yes	Zymomonas mobilis ssp. mobilis NCIMB 11163		1	1
No Yes	Rhodobacter sphaeroides KD131		7	7
No Yes	Rhodobacter sphaeroides ATCC 17025		5	5
No Yes	Rhodobacter sphaeroides ATCC 17029		7	7
No Yes	Gluconacetobacter diazotrophicus PAl 5		6	6
No Yes	Rickettsia bellii OSU 85-389		3	3
No Yes	Rickettsia rickettsii Iowa		1	1
No Yes	Methylobacterium extorquens DM4		8	8
No Yes	Methylobacterium extorquens AM1		7	7
No Yes	Brucella suis ATCC 23445		2	2
No Yes	Brucella melitensis ATCC 23457		2	2
No Yes	Brucella abortus S19		2	2
No Yes	Brucella melitensis biov. Abortus 2308		2	2
No Yes	Rhizobium etli CIAT 652		6	6
No Yes	Rhizobium leguminosarum bv. trifolii WSM2304		6	6
No Yes	Rhizobium leguminosarum bv. trifolii WSM1325		8	8
No Yes	Rhodopseudomonas palustris TIE-1		9	9
No Yes	Rhodopseudomonas palustris HaA2		11	11
No Yes	Rhodopseudomonas palustris BisB5		10	10
No Yes	Rhodopseudomonas palustris BisB18		10	10
No Yes	Rhodopseudomonas palustris BisA53		11	11
No Yes	Bradyrhizobium sp. BTAi1		11	11
No Yes	Acidithiobacillus ferrooxidans ATCC 53993		7	7
No Yes	Haemophilus somnus 2336		1	1
No Yes	Haemophilus influenzae PittGG		2	2
No Yes	Haemophilus influenzae PittEE		3	3
No Yes	Haemophilus influenzae 86-028NP		3	3
No Yes	Actinobacillus pleuropneumoniae ser. 3 JL03		3	3
No Yes	Actinobacillus pleuropneumoniae ser. 7 AP76		3	3
No Yes	Vibrio fischeri MJ11		1	1
No Yes	Vibrio vulnificus CMCP6 (Poor annotation)		4	4
No Yes	Vibrio cholerae M66-2		2	2
No Yes	Vibrio cholerae O395		2	2
No Yes	Vibrio cholerae MJ-1236		2	2
No Yes	Shewanella sp. W3-18-1		4	4
No Yes	Shewanella sp. ANA-3		4	4
No Yes	Shewanella baltica OS223		4	4
No Yes	Shewanella baltica OS185		3	3
No Yes	Shewanella baltica OS195		3	3
No Yes	Shewanella sp. MR-4		4	4
No Yes	Stenotrophomonas maltophilia K279a		7	7
No Yes	Xylella fastidiosa M23		5	5
No Yes	Xylella fastidiosa M12		5	5
No Yes	Xylella fastidiosa Temecula1		5	5
No Yes	Xanthomonas campestris pv. vesicatoria 85-10 (Completed 2005)		8	8
No Yes	Xanthomonas oryzae pv. oryzae PXO99A		8	8
No Yes	Xanthomonas oryzae pv. oryzae MAFF 311018		8	8
No Yes	Xanthomonas campestris pv. campestris B100		7	7
No Yes	Xanthomonas campestris pv. campestris 8004 (Completed 2005)		8	8
No Yes	Thioalkalivibrio sp. K90mix		4	4
No Yes	Coxiella burnetii CbuK_Q154		3	3
No Yes	Coxiella burnetii CbuG_Q212		3	3
No Yes	Coxiella burnetii Dugway 5J108-111		4	4
No Yes	Coxiella burnetii RSA 331		2	2
No Yes	Legionella pneumophila Corby		6	6
No Yes	Legionella pneumophila Paris		6	6
No Yes	Legionella pneumophila Lens		6	6
No Yes	Dickeya dadantii Ech586		6	6
No Yes	Yersinia pseudotuberculosis PB1/+		5	5
No Yes	Yersinia pseudotuberculosis YPIII		6	6
No Yes	Yersinia pseudotuberculosis IP 31758		5	5
No Yes	Yersinia pestis Z176003		6	6
No Yes	Yersinia pestis Pestoides F		6	6
No Yes	Yersinia pestis Nepal516		6	6
No Yes	Yersinia pestis Antiqua		7	6
No Yes	Yersinia pestis Angola		6	6
No Yes	Yersinia pestis biov. Microtus 91001		5	5
No Yes	Yersinia pestis KIM		6	6
No Yes	Shigella flexneri 5 8401		8	8
No Yes	Shigella flexneri 2a 301		7	7
No Yes	Shigella boydii CDC 3083-94		8	8
No Yes	Salmonella enterica ssp. arizonae ser. 62:z4,z23:--		6	6
No Yes	Salmonella enterica ssp. enterica ser. Schwarzengrund CVM19633		7	7
No Yes	Salmonella enterica ssp. enterica ser. Enteritidis P125109		7	7
No Yes	Salmonella enterica ssp. enterica ser. Choleraesuis str. SC-B67		7	7
No Yes	Salmonella enterica ssp. enterica ser. Newport SL254		8	8
No Yes	Salmonella enterica ssp. enterica ser. Dublin CT_02021853		8	8
No Yes	Salmonella enterica ssp. enterica ser. Typhi CT18		7	7
No Yes	Salmonella enterica ssp. enterica ser. Typhi Ty2		7	7
No Yes	Salmonella enterica ssp. enterica ser. Agona SL483		7	7
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi C RKS4594		6	6
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi B SPB7		7	7
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A AKU_12601		7	7
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A ATCC 9150		7	7
No Yes	Salmonella enterica ssp. enterica ser. Heidelberg SL476		7	7
No Yes	Salmonella enterica ssp. enterica ser. Gallinarum 287/91		7	7
No Yes	Klebsiella pneumoniae 342		10	10
No Yes	Klebsiella pneumoniae NTUH-K2044		8	8
No Yes	Escherichia coli ED1a		12	12
No Yes	Escherichia coli IAI39		12	12
No Yes	Escherichia coli UMN026		12	12
No Yes	Escherichia coli 55989		11	11
No Yes	Escherichia coli S88		11	11
No Yes	Escherichia coli IAI1		9	9
No Yes	Escherichia coli BL21		9	9
No Yes	Escherichia coli ATCC 8739		8	8
No Yes	Escherichia coli BL21(DE3)		9	9
No Yes	Escherichia coli SMS-3-5		8	8
No Yes	Escherichia coli SE11		12	12
No Yes	Escherichia coli APEC O1		11	11
No Yes	Escherichia coli O103:H2 12009		15	15
No Yes	Escherichia coli UTI89		10	10
No Yes	Escherichia coli 536		7	7
No Yes	Escherichia coli HS		7	7
No Yes	Escherichia coli E24377A		7	7
No Yes	Escherichia coli O55:H7 CB9615		16	16
No Yes	Escherichia coli O26:H11 11368		19	19
No Yes	Escherichia coli CFT073		10	10
No Yes	Escherichia coli O111:H- 11128		16	16
No Yes	Escherichia coli O127:H6 E2348/69		10	10
No Yes	Escherichia coli O157:H7 EDL933		16	16
No Yes	Escherichia coli O157:H7 TW14359		17	17
No Yes	Escherichia coli O157:H7 EC4115		17	17
No Yes	Escherichia coli O157:H7 Sakai		17	17
No Yes	Escherichia coli BW2952		9	9
No Yes	Escherichia coli K-12 subW3110		8	8
No Yes	Escherichia coli K-12 subDH10B		8	8
No Yes	Escherichia coli B REL606		8	8
No Yes	Erwinia amylovora CFBP1430		6	6
No Yes	Pseudomonas syringae pv. phaseolicola 1448A		8	8
No Yes	Pseudomonas syringae pv. syringae B728a		9	9
No Yes	Pseudomonas putida W619		6	6
No Yes	Pseudomonas putida F1		5	5
No Yes	Pseudomonas putida GB-1		6	6
No Yes	Pseudomonas fluorescens SBW25		10	10
No Yes	Pseudomonas fluorescens Pf0-1		9	9
No Yes	Pseudomonas aeruginosa LESB58		11	11
No Yes	Pseudomonas aeruginosa PA7		12	12
No Yes	Pseudomonas aeruginosa UCBPP-PA14		11	11
No Yes	Acinetobacter baumannii AB307-0294		1	1
No Yes	Acinetobacter baumannii AYE		1	1
No Yes	Acinetobacter baumannii AB0057		1	1
No Yes	Acinetobacter baumannii ACICU		3	3
No Yes	Francisella novicida U112		4	4
No Yes	Francisella tularensis ssp. mediasiatica FSC147		2	2
No Yes	Francisella tularensis ssp. holarctica FTNF002-00		4	4
No Yes	Francisella tularensis ssp. holarctica OSU18		4	4
No Yes	Francisella tularensis ssp. holarctica		3	3
No Yes	Francisella tularensis ssp. tularensis WY96-3418		1	1
No Yes	Francisella tularensis ssp. tularensis FSC198		1	1
No Yes	Prochlorococcus marinus NATL1A		2	2
No Yes	Prochlorococcus marinus MIT 9301		2	2
No Yes	Prochlorococcus marinus MIT 9515		1	1
No Yes	Prochlorococcus marinus AS9601		2	2
No Yes	Prochlorococcus marinus ssp. marinus CCMP1375		1	1
No Yes	Prochlorococcus marinus ssp. pastoris CCMP1986		2	2
No Yes	Prochlorococcus marinus MIT 9215		2	2
No Yes	Prochlorococcus marinus MIT 9211		1	1
No Yes	Prochlorococcus marinus MIT 9312		2	2
No Yes	Prochlorococcus marinus MIT 9303		2	2
No Yes	Prochlorococcus marinus NATL2A		2	2
No Yes	Cyanothece sp. PCC 8802		5	5
No Yes	Cyanothece sp. PCC 7425		8	8
No Yes	Cyanothece sp. PCC 7424		6	6
No Yes	Cyanothece sp. PCC 8801		5	5
No Yes	Synechococcus sp. JA-2-3Ba(2-13) (Poor annotation)		4	4
No Yes	Synechococcus sp. JA-3-3Ab (Poor annotation)		4	4
No Yes	Synechococcus sp. CC9902 (Poor annotation)		2	2
No Yes	Synechococcus sp. RCC307		3	3
No Yes	Synechococcus sp. CC9605 (Poor annotation)		2	2
No Yes	Synechococcus sp. WH 8102 (Good annotation)		3	3
No Yes	Synechococcus sp. CC9311		2	2
No Yes	Synechococcus sp. WH 7803		1	1
No Yes	Synechococcus sp. PCC 7002		4	4
No Yes	Synechococcus elongatus PCC 7942		4	4
No Yes	Methanococcus maripaludis C6		2	2
No Yes	Methanococcus maripaludis C7		2	2
No Yes	Methanococcus maripaludis C5		1	1
No Yes	Sulfolobus islandicus Y.G.57.14		2	2
No Yes	Sulfolobus islandicus L.S.2.15		1	1
No Yes	Sulfolobus islandicus M.16.27		1	1
No Yes	Sulfolobus islandicus M.14.25		1	1
No Yes	Sulfolobus islandicus M.16.4		1	1
No Yes	Sulfolobus islandicus L.D.8.5		1	1
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	119	119
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		31	31
No Yes	Lotus japonicus (Early assembly)		32	31
No Yes	Prunus persica (Early draft)	Peach	447	447
No Yes	Manihot esculenta (Early draft)	Cassava	156	156
No Yes	Ricinus communis (Early assembly)	Castor bean	85	85
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	115	115
No Yes	Phoenix dactylifera (Early draft)	Date palm	85	85
No Yes	Trypanosoma vivax (Parial)		68	64
No Yes	Trypanosoma congolense (Partial)		98	93
No Yes	Toxoplasma gondii GT1 (Early assembly)		34	34
No Yes	Toxoplasma gondii VEG (Early assembly)		36	36
No Yes	Toxoplasma gondii RH (Archived)		33	33
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	138	138
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	117	117
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	123	123
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	118	118
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	122	121
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	118	118
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	104	104
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	100	100
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	106	106
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	130	130
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	140	140
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	91	91
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	109	109
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	118	118
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	111	111
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	104	104
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	95	94
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	98	98
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	118	118
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	84	84
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	111	111
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	116	116
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	85	85
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	113	113
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	104	104
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	114	113
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	83	83
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	98	98
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	106	106
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	96	96
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	112	111
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	97	96
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	105	105
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	117	117
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	110	110
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	127	127
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	131	131
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	103	103
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	99	99
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	112	112
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	143	143
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	124	124
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	127	127
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	157	157
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	122	122
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		57	57
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		73	73
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	50	50
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	122	120
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	69	67
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	65	65
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	64	64
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	93	91
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	94	92
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	110	110
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	372	372
No Yes	NCBI viral sequences (Viral)		319	319
No Yes	PDB chains (SCOP 1.73) (PDB)		112	112
No Yes	TargetDB (Targets)		688	678
No Yes	UniProt 15.0 (UniProt)		19544	19448
No Yes	UniProt 15.0 viral sequences (Viral)		751	751