Ubiquitin-like superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		45139	45139
No Yes	Homo sapiens 49_36k (all transcripts)	Human	490	425
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	319	287
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	137	125
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	230	200
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	324	293
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	391	358
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	137	126
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	135	126
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	104	99
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	315	290
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	390	348
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	116	112
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	143	133
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	173	163
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	117	108
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	126	116
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	119	112
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	140	131
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	265	233
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	94	91
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	169	152
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	240	227
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	126	112
No Yes	Equus caballus 49_2 (all transcripts)	Horse	227	207
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	122	116
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	164	150
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	110	107
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	112	109
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	131	120
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	105	100
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	129	124
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	145	144
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	146	136
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	309	283
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	181	171
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	155	143
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	150	135
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	130	120
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	212	188
No Yes	Xenopus laevis	African clawed frog	351	307
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	186	176
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	265	235
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	274	244
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	228	206
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	197	186
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	609	564
No Yes	Branchiostoma floridae 1.0	Florida lancelet	236	195
No Yes	Ciona savignyi 49_2f (all transcripts)		190	130
No Yes	Ciona intestinalis 49_2i (all transcripts)		138	109
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	217	204
No Yes	Helobdella robusta		103	89
No Yes	Capitella sp. I		143	122
No Yes	Bombyx mori	Domestic silkworm	82	71
No Yes	Nasonia vitripennis	Jewel wasp	88	67
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	198	139
No Yes	Drosophila grimshawi 1.3		90	72
No Yes	Drosophila willistoni 1.3		101	78
No Yes	Drosophila pseudoobscura 2.3		78	70
No Yes	Drosophila persimilis 1.3		89	74
No Yes	Drosophila yakuba 1.3		90	78
No Yes	Drosophila simulans 1.3		78	67
No Yes	Drosophila sechellia 1.3		99	77
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	184	133
No Yes	Drosophila erecta 1.3		103	75
No Yes	Drosophila ananassae 1.3		106	80
No Yes	Drosophila virilis 1.2		92	76
No Yes	Drosophila mojavensis 1.3		110	76
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	118	86
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	104	70
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	86	70
No Yes	Tribolium castaneum 3.0	Red flour beetle	102	83
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	94	75
No Yes	Acyrthosiphon pisum	Pea aphid	102	84
No Yes	Daphnia pulex	Common water flea	103	86
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	81	68
No Yes	Lottia gigantea		125	102
No Yes	Pristionchus pacificus		76	60
No Yes	Meloidogyne incognita	Southern root-knot nematode	93	86
No Yes	Meloidogyne hapla		51	48
No Yes	Brugia malayi	Agent of lymphatic filariasis	46	37
No Yes	Caenorhabditis japonica		82	68
No Yes	Caenorhabditis brenneri		71	67
No Yes	Caenorhabditis remanei		95	78
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	185	132
No Yes	Caenorhabditis briggsae 2		84	71
No Yes	Schistosoma mansoni		82	74
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	120	103
No Yes	Hydra magnipapillata		93	80
No Yes	Trichoplax adhaerens		81	69
No Yes	Proterospongia sp. ATCC 50818		67	61
No Yes	Monosiga brevicollis		48	45
No Yes	Capsaspora owczarzaki ATCC 30864		69	61
No Yes	Malassezia globosa CBS 7966		21	20
No Yes	Ustilago maydis		29	24
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		35	28
No Yes	Melampsora laricis-populina		40	33
No Yes	Sporobolomyces roseus IAM 13481		29	23
No Yes	Serpula lacrymans var. lacrymans S7.9		36	29
No Yes	Coprinopsis cinerea okayama7 130		39	33
No Yes	Pleurotus ostreatus	Oyster mushroom	45	33
No Yes	Laccaria bicolor S238N-H82		51	43
No Yes	Agaricus bisporus var. bisporus		33	30
No Yes	Schizophyllum commune		37	31
No Yes	Heterobasidion annosum		38	30
No Yes	Phanerochaete chrysosporium RP-78 2.1		37	28
No Yes	Postia placenta		53	38
No Yes	Tremella mesenterica		28	23
No Yes	Cryptococcus neoformans JEC21		33	25
No Yes	Magnaporthe grisea 70-15		32	28
No Yes	Podospora anserina		30	26
No Yes	Sporotrichum thermophile ATCC 42464		27	24
No Yes	Thielavia terrestris NRRL 8126		28	24
No Yes	Chaetomium globosum CBS 148.51		28	24
No Yes	Neurospora tetrasperma		27	24
No Yes	Neurospora discreta FGSC 8579		29	26
No Yes	Neurospora crassa OR74A		27	24
No Yes	Cryphonectria parasitica	Chestnut blight fungus	31	28
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		33	31
No Yes	Nectria haematococca mpVI		33	30
No Yes	Fusarium verticillioides 7600		30	27
No Yes	Fusarium graminearum		32	30
No Yes	Trichoderma atroviride		32	29
No Yes	Trichoderma reesei 1.2		31	28
No Yes	Trichoderma virens Gv29-8		33	30
No Yes	Verticillium dahliae VdLs.17		29	27
No Yes	Verticillium albo-atrum VaMs.102		28	27
No Yes	Botrytis cinerea B05.10		34	31
No Yes	Sclerotinia sclerotiorum		32	29
No Yes	Alternaria brassicicola		29	25
No Yes	Pyrenophora tritici-repentis		29	26
No Yes	Cochliobolus heterostrophus		28	24
No Yes	Stagonospora nodorum		32	29
No Yes	Mycosphaerella fijiensis CIRAD86		37	33
No Yes	Mycosphaerella graminicola IPO323		31	29
No Yes	Ajellomyces dermatitidis SLH14081		32	28
No Yes	Histoplasma capsulatum class NAmI strain WU24		26	22
No Yes	Microsporum gypseum		31	29
No Yes	Arthroderma benhamiae CBS 112371		27	25
No Yes	Microsporum canis CBS 113480		29	26
No Yes	Trichophyton equinum CBS 127.97		30	28
No Yes	Trichophyton verrucosum HKI 0517		24	23
No Yes	Trichophyton tonsurans CBS 112818		30	28
No Yes	Trichophyton rubrum CBS 118892		30	29
No Yes	Paracoccidioides brasiliensis Pb18		32	29
No Yes	Coccidioides posadasii RMSCC 3488		32	29
No Yes	Coccidioides immitis RS		27	26
No Yes	Uncinocarpus reesii 1704		24	21
No Yes	Aspergillus fumigatus Af293		28	25
No Yes	Neosartorya fischeri NRRL 181		34	30
No Yes	Penicillium chrysogenum Wisconsin 54-1255		30	26
No Yes	Penicillium marneffei ATCC 18224		39	36
No Yes	Aspergillus carbonarius ITEM 5010		31	27
No Yes	Aspergillus terreus NIH2624		31	27
No Yes	Aspergillus oryzae RIB40		29	26
No Yes	Aspergillus niger ATCC 1015		17	16
No Yes	Aspergillus flavus NRRL3357		34	30
No Yes	Aspergillus clavatus NRRL 1		34	30
No Yes	Aspergillus nidulans FGSC A4		31	28
No Yes	Tuber melanosporum Vittad	Perigord truffle	39	31
No Yes	Candida dubliniensis CD36		24	21
No Yes	Candida tropicalis MYA-3404		22	19
No Yes	Candida parapsilosis		22	20
No Yes	Candida albicans SC5314		24	22
No Yes	Yarrowia lipolytica CLIB122		31	26
No Yes	Candida lusitaniae ATCC 42720		23	19
No Yes	Vanderwaltozyma polyspora DSM 70294		32	25
No Yes	Candida glabrata CBS138		32	25
No Yes	Kluyveromyces thermotolerans CBS 6340		25	21
No Yes	Lachancea kluyveri		26	22
No Yes	Kluyveromyces waltii		19	16
No Yes	Lodderomyces elongisporus NRRL YB-4239		20	17
No Yes	Ashbya gossypii ATCC 10895		23	19
No Yes	Debaromyces hansenii		27	22
No Yes	Zygosaccharomyces rouxii		29	23
No Yes	Saccharomyces mikatae MIT		27	23
No Yes	Saccharomyces paradoxus MIT		28	23
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	29	24
No Yes	Saccharomyces bayanus MIT		26	20
No Yes	Candida guilliermondii ATCC 6260		28	24
No Yes	Pichia stipitis CBS 6054		22	19
No Yes	Pichia pastoris GS115		24	21
No Yes	Kluyveromyces lactis		23	19
No Yes	Schizosaccharomyces octosporus yFS286		29	26
No Yes	Schizosaccharomyces japonicus yFS275		33	28
No Yes	Schizosaccharomyces pombe	Fission yeast	31	27
No Yes	Allomyces macrogynus ATCC 38327		97	87
No Yes	Rhizopus oryzae RA 99-880		57	50
No Yes	Phycomyces blakesleeanus		58	49
No Yes	Mucor circinelloides		54	46
No Yes	Encephalitozoon intestinalis		8	8
No Yes	Encephalitozoon cuniculi		7	7
No Yes	Spizellomyces punctatus DAOM BR117		49	41
No Yes	Batrachochytrium dendrobatidis JEL423		30	28
No Yes	Dictyostelium discoideum		120	89
No Yes	Dictyostelium purpureum		92	76
No Yes	Entamoeba dispar		33	32
No Yes	Entamoeba invadens		41	39
No Yes	Entamoeba histolytica 1		43	42
No Yes	Arabidopsis lyrata	Lyrate rockcress	198	136
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	244	171
No Yes	Carica papaya	Papaya	87	66
No Yes	Medicago truncatula	Barrel medic	113	88
No Yes	Glycine max	Soybean	220	168
No Yes	Cucumis sativus	Cucumber	171	162
No Yes	Populus trichocarpa 1.1	Black cottonwood	210	164
No Yes	Vitis vinifera	Wine grape	85	78
No Yes	Brachypodium distachyon		167	132
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	265	192
No Yes	Zea mays subsp. mays	Maize	243	178
No Yes	Sorghum bicolor	Sorghum	155	103
No Yes	Selaginella moellendorffii		137	89
No Yes	Physcomitrella patens subsp. patens		130	94
No Yes	Coccomyxa sp. C-169		54	44
No Yes	Chlorella sp. NC64A		53	43
No Yes	Chlorella vulgaris		40	34
No Yes	Volvox carteri f. nagariensis		45	38
No Yes	Chlamydomonas reinhardtii 4.0		64	62
No Yes	Ostreococcus sp. RCC809		24	23
No Yes	Ostreococcus lucimarinus CCE9901		31	28
No Yes	Ostreococcus tauri		27	25
No Yes	Micromonas sp. RCC299		39	36
No Yes	Micromonas pusilla CCMP1545		39	35
No Yes	Cyanidioschyzon merolae		17	16
No Yes	Giardia lamblia		15	15
No Yes	Trypanosoma cruzi strain CL Brener		57	57
No Yes	Trypanosoma brucei		36	29
No Yes	Leishmania mexicana		40	39
No Yes	Leishmania major strain Friedlin		66	55
No Yes	Leishmania infantum JPCM5		59	41
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		58	35
No Yes	Aureococcus anophagefferens		53	45
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	54	45
No Yes	Phytophthora sojae 1.1		55	47
No Yes	Phytophthora infestans T30-4		54	48
No Yes	Phytophthora capsici		47	40
No Yes	Phaeodactylum tricornutum		33	29
No Yes	Fragilariopsis cylindrus		89	64
No Yes	Thalassiosira pseudonana		36	34
No Yes	Paramecium tetraurelia		160	127
No Yes	Tetrahymena thermophila SB210 1		111	60
No Yes	Babesia bovis T2Bo		21	20
No Yes	Theileria parva		22	21
No Yes	Theileria annulata		21	20
No Yes	Plasmodium falciparum 3D7		25	21
No Yes	Plasmodium vivax SaI-1		28	24
No Yes	Plasmodium knowlesi strain H		30	23
No Yes	Plasmodium yoelii ssp. yoelii 1		22	19
No Yes	Plasmodium chabaudi		18	18
No Yes	Plasmodium berghei ANKA		20	20
No Yes	Cryptosporidium hominis		23	20
No Yes	Cryptosporidium muris		24	23
No Yes	Cryptosporidium parvum Iowa II		26	23
No Yes	Neospora caninum Nc-Liverpool		35	30
No Yes	Neospora caninum		30	25
No Yes	Toxoplasma gondii ME49		30	26
No Yes	Naegleria gruberi		109	76
No Yes	Trichomonas vaginalis		188	170
No Yes	Emiliania huxleyi CCMP1516		131	117
No Yes	Nakamurella multipartita DSM 44233		1	1
No Yes	Streptomyces avermitilis MA-4680		1	1
No Yes	Conexibacter woesei DSM 14684		1	1
No Yes	Bacteroides fragilis NCTC 9343		1	1
No Yes	Spirosoma linguale DSM 74		1	1
No Yes	Clostridium acetobutylicum ATCC 824		1	1
No Yes	Streptococcus sanguinis SK36		1	1
No Yes	Streptococcus gordonii Challis subCH1		1	1
No Yes	Acidovorax citrulli AAC00-1		1	1
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	190	138
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	137	107
No Yes	Cryptococcus neoformans var. grubii H99		29	25
No Yes	Cryptococcus neoformans B-3501A		37	29
No Yes	Ajellomyces dermatitidis ER-3		31	28
No Yes	Histoplasma capsulatum H143		30	26
No Yes	Histoplasma capsulatum H88		32	28
No Yes	Histoplasma capsulatum G186AR		33	29
No Yes	Paracoccidioides brasiliensis Pb01		29	26
No Yes	Paracoccidioides brasiliensis Pb03		31	28
No Yes	Coccidioides posadasii str. Silveira		32	28
No Yes	Coccidioides immitis RMSCC 3703		27	25
No Yes	Coccidioides immitis RMSCC 2394		31	28
No Yes	Coccidioides immitis H538.4		29	24
No Yes	Aspergillus fumigatus A1163		31	28
No Yes	Candida albicans WO-1		22	20
No Yes	Saccharomyces cerevisiae YJM789		28	23
No Yes	Saccharomyces cerevisiae RM11-1a		29	24
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	29	24
No Yes	Schizosaccharomyces pombe 972h-		31	27
No Yes	Batrachochytrium dendrobatidis JAM81		35	31
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	173	134
No Yes	Plasmodium falciparum HB3		20	16
No Yes	Plasmodium falciparum Dd2		16	13
No Yes	Lactococcus lactis ssp. cremoris MG1363		1	1
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	204	190
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		11	10
No Yes	Lotus japonicus (Early assembly)		16	10
No Yes	Prunus persica (Early draft)	Peach	182	126
No Yes	Manihot esculenta (Early draft)	Cassava	185	157
No Yes	Ricinus communis (Early assembly)	Castor bean	88	80
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	175	114
No Yes	Phoenix dactylifera (Early draft)	Date palm	42	42
No Yes	Trypanosoma vivax (Parial)		31	29
No Yes	Trypanosoma congolense (Partial)		38	26
No Yes	Toxoplasma gondii GT1 (Early assembly)		29	25
No Yes	Toxoplasma gondii VEG (Early assembly)		28	24
No Yes	Toxoplasma gondii RH (Archived)		28	24
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	201	175
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	186	169
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	137	125
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	181	164
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	197	178
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	195	178
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	137	126
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	135	126
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	104	99
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	216	194
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	198	172
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	116	112
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	143	133
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	169	159
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	117	108
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	126	116
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	119	112
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	127	118
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	192	170
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	94	91
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	169	152
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	188	176
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	126	112
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	180	167
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	122	116
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	164	150
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	110	107
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	112	109
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	131	120
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	105	100
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	129	124
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	145	144
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	144	135
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	177	165
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	123	114
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	153	141
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	144	130
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	116	108
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	143	127
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	128	118
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	188	164
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	220	195
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	190	169
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	197	186
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	201	189
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		62	52
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		82	70
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	88	65
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	190	138
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	100	78
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	106	81
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	85	69
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	90	74
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	90	74
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	167	131
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	264	191
No Yes	NCBI viral sequences (Viral)		53	53
No Yes	PDB chains (SCOP 1.73) (PDB)		138	137
No Yes	TargetDB (Targets)		916	724
No Yes	UniProt 15.0 (UniProt)		10893	8751
No Yes	UniProt 15.0 viral sequences (Viral)		97	93