RNA-binding domain, RBD superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		90002	90002
No Yes	Homo sapiens 49_36k (all transcripts)	Human	794	572
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	543	408
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	219	176
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	396	291
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	629	478
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	764	592
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	204	160
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	237	180
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	226	162
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	636	457
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	753	526
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	195	156
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	248	183
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	323	231
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	219	167
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	227	173
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	221	171
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	254	199
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	406	311
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	194	146
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	279	204
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	498	386
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	195	155
No Yes	Equus caballus 49_2 (all transcripts)	Horse	324	236
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	280	216
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	277	202
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	207	156
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	208	166
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	241	182
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	202	153
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	263	206
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	221	176
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	238	182
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	566	409
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	392	304
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	263	197
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	258	197
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	258	193
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	341	250
No Yes	Xenopus laevis	African clawed frog	777	557
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	349	260
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	486	359
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	471	346
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	436	327
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	321	247
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	805	598
No Yes	Branchiostoma floridae 1.0	Florida lancelet	303	248
No Yes	Ciona savignyi 49_2f (all transcripts)		291	202
No Yes	Ciona intestinalis 49_2i (all transcripts)		239	183
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	403	330
No Yes	Helobdella robusta		268	219
No Yes	Capitella sp. I		205	165
No Yes	Bombyx mori	Domestic silkworm	134	117
No Yes	Nasonia vitripennis	Jewel wasp	154	119
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	322	266
No Yes	Drosophila grimshawi 1.3		177	138
No Yes	Drosophila willistoni 1.3		183	147
No Yes	Drosophila pseudoobscura 2.3		172	135
No Yes	Drosophila persimilis 1.3		155	125
No Yes	Drosophila yakuba 1.3		182	138
No Yes	Drosophila simulans 1.3		159	130
No Yes	Drosophila sechellia 1.3		179	144
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	491	350
No Yes	Drosophila erecta 1.3		182	142
No Yes	Drosophila ananassae 1.3		176	138
No Yes	Drosophila virilis 1.2		180	140
No Yes	Drosophila mojavensis 1.3		174	136
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	240	183
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	234	181
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	184	146
No Yes	Tribolium castaneum 3.0	Red flour beetle	170	132
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	151	122
No Yes	Acyrthosiphon pisum	Pea aphid	194	150
No Yes	Daphnia pulex	Common water flea	216	179
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	136	113
No Yes	Lottia gigantea		183	148
No Yes	Pristionchus pacificus		152	139
No Yes	Meloidogyne incognita	Southern root-knot nematode	241	201
No Yes	Meloidogyne hapla		133	117
No Yes	Brugia malayi	Agent of lymphatic filariasis	105	83
No Yes	Caenorhabditis japonica		132	108
No Yes	Caenorhabditis brenneri		122	99
No Yes	Caenorhabditis remanei		196	162
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	336	257
No Yes	Caenorhabditis briggsae 2		160	129
No Yes	Schistosoma mansoni		233	180
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	203	172
No Yes	Hydra magnipapillata		217	177
No Yes	Trichoplax adhaerens		130	109
No Yes	Proterospongia sp. ATCC 50818		107	83
No Yes	Monosiga brevicollis		107	80
No Yes	Capsaspora owczarzaki ATCC 30864		101	78
No Yes	Malassezia globosa CBS 7966		70	55
No Yes	Ustilago maydis		87	68
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		132	108
No Yes	Melampsora laricis-populina		105	87
No Yes	Sporobolomyces roseus IAM 13481		77	59
No Yes	Serpula lacrymans var. lacrymans S7.9		72	59
No Yes	Coprinopsis cinerea okayama7 130		104	82
No Yes	Pleurotus ostreatus	Oyster mushroom	101	83
No Yes	Laccaria bicolor S238N-H82		110	90
No Yes	Agaricus bisporus var. bisporus		98	79
No Yes	Schizophyllum commune		105	82
No Yes	Heterobasidion annosum		98	78
No Yes	Phanerochaete chrysosporium RP-78 2.1		95	76
No Yes	Postia placenta		140	110
No Yes	Tremella mesenterica		86	68
No Yes	Cryptococcus neoformans JEC21		83	66
No Yes	Magnaporthe grisea 70-15		91	74
No Yes	Podospora anserina		94	75
No Yes	Sporotrichum thermophile ATCC 42464		87	69
No Yes	Thielavia terrestris NRRL 8126		92	72
No Yes	Chaetomium globosum CBS 148.51		90	73
No Yes	Neurospora tetrasperma		94	76
No Yes	Neurospora discreta FGSC 8579		93	75
No Yes	Neurospora crassa OR74A		92	75
No Yes	Cryphonectria parasitica	Chestnut blight fungus	90	71
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		86	68
No Yes	Nectria haematococca mpVI		88	70
No Yes	Fusarium verticillioides 7600		87	69
No Yes	Fusarium graminearum		88	72
No Yes	Trichoderma atroviride		84	66
No Yes	Trichoderma reesei 1.2		86	68
No Yes	Trichoderma virens Gv29-8		84	67
No Yes	Verticillium dahliae VdLs.17		86	67
No Yes	Verticillium albo-atrum VaMs.102		73	63
No Yes	Botrytis cinerea B05.10		90	72
No Yes	Sclerotinia sclerotiorum		93	71
No Yes	Alternaria brassicicola		80	65
No Yes	Pyrenophora tritici-repentis		91	73
No Yes	Cochliobolus heterostrophus		80	62
No Yes	Stagonospora nodorum		87	71
No Yes	Mycosphaerella fijiensis CIRAD86		80	64
No Yes	Mycosphaerella graminicola IPO323		87	69
No Yes	Ajellomyces dermatitidis SLH14081		89	72
No Yes	Histoplasma capsulatum class NAmI strain WU24		79	65
No Yes	Microsporum gypseum		91	72
No Yes	Arthroderma benhamiae CBS 112371		81	64
No Yes	Microsporum canis CBS 113480		89	72
No Yes	Trichophyton equinum CBS 127.97		84	69
No Yes	Trichophyton verrucosum HKI 0517		75	62
No Yes	Trichophyton tonsurans CBS 112818		81	65
No Yes	Trichophyton rubrum CBS 118892		87	72
No Yes	Paracoccidioides brasiliensis Pb18		88	69
No Yes	Coccidioides posadasii RMSCC 3488		92	73
No Yes	Coccidioides immitis RS		87	70
No Yes	Uncinocarpus reesii 1704		85	65
No Yes	Aspergillus fumigatus Af293		91	73
No Yes	Neosartorya fischeri NRRL 181		91	73
No Yes	Penicillium chrysogenum Wisconsin 54-1255		94	76
No Yes	Penicillium marneffei ATCC 18224		104	81
No Yes	Aspergillus carbonarius ITEM 5010		97	77
No Yes	Aspergillus terreus NIH2624		88	71
No Yes	Aspergillus oryzae RIB40		90	73
No Yes	Aspergillus niger ATCC 1015		55	43
No Yes	Aspergillus flavus NRRL3357		88	69
No Yes	Aspergillus clavatus NRRL 1		91	72
No Yes	Aspergillus nidulans FGSC A4		94	74
No Yes	Tuber melanosporum Vittad	Perigord truffle	85	72
No Yes	Candida dubliniensis CD36		77	60
No Yes	Candida tropicalis MYA-3404		75	59
No Yes	Candida parapsilosis		70	56
No Yes	Candida albicans SC5314		76	60
No Yes	Yarrowia lipolytica CLIB122		85	67
No Yes	Candida lusitaniae ATCC 42720		64	52
No Yes	Vanderwaltozyma polyspora DSM 70294		74	57
No Yes	Candida glabrata CBS138		79	57
No Yes	Kluyveromyces thermotolerans CBS 6340		72	56
No Yes	Lachancea kluyveri		75	58
No Yes	Kluyveromyces waltii		71	52
No Yes	Lodderomyces elongisporus NRRL YB-4239		66	56
No Yes	Ashbya gossypii ATCC 10895		72	53
No Yes	Debaromyces hansenii		74	59
No Yes	Zygosaccharomyces rouxii		71	52
No Yes	Saccharomyces mikatae MIT		77	59
No Yes	Saccharomyces paradoxus MIT		79	58
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	80	59
No Yes	Saccharomyces bayanus MIT		78	56
No Yes	Candida guilliermondii ATCC 6260		90	73
No Yes	Pichia stipitis CBS 6054		74	57
No Yes	Pichia pastoris GS115		69	55
No Yes	Kluyveromyces lactis		69	51
No Yes	Schizosaccharomyces octosporus yFS286		99	76
No Yes	Schizosaccharomyces japonicus yFS275		93	73
No Yes	Schizosaccharomyces pombe	Fission yeast	96	76
No Yes	Allomyces macrogynus ATCC 38327		196	160
No Yes	Rhizopus oryzae RA 99-880		146	125
No Yes	Phycomyces blakesleeanus		147	118
No Yes	Mucor circinelloides		133	111
No Yes	Encephalitozoon intestinalis		27	22
No Yes	Encephalitozoon cuniculi		27	22
No Yes	Spizellomyces punctatus DAOM BR117		128	97
No Yes	Batrachochytrium dendrobatidis JEL423		102	86
No Yes	Dictyostelium discoideum		136	98
No Yes	Dictyostelium purpureum		124	94
No Yes	Entamoeba dispar		97	85
No Yes	Entamoeba invadens		125	107
No Yes	Entamoeba histolytica 1		113	94
No Yes	Arabidopsis lyrata	Lyrate rockcress	398	316
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	495	407
No Yes	Carica papaya	Papaya	225	186
No Yes	Medicago truncatula	Barrel medic	247	208
No Yes	Glycine max	Soybean	566	460
No Yes	Cucumis sativus	Cucumber	539	448
No Yes	Populus trichocarpa 1.1	Black cottonwood	448	375
No Yes	Vitis vinifera	Wine grape	279	230
No Yes	Brachypodium distachyon		517	414
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	625	508
No Yes	Zea mays subsp. mays	Maize	800	694
No Yes	Sorghum bicolor	Sorghum	322	257
No Yes	Selaginella moellendorffii		377	291
No Yes	Physcomitrella patens subsp. patens		253	203
No Yes	Coccomyxa sp. C-169		114	90
No Yes	Chlorella sp. NC64A		122	98
No Yes	Chlorella vulgaris		115	92
No Yes	Volvox carteri f. nagariensis		130	99
No Yes	Chlamydomonas reinhardtii 4.0		121	99
No Yes	Ostreococcus sp. RCC809		79	67
No Yes	Ostreococcus lucimarinus CCE9901		75	65
No Yes	Ostreococcus tauri		77	63
No Yes	Micromonas sp. RCC299		101	86
No Yes	Micromonas pusilla CCMP1545		109	90
No Yes	Cyanidioschyzon merolae		41	31
No Yes	Giardia lamblia		20	14
No Yes	Trypanosoma cruzi strain CL Brener		169	144
No Yes	Trypanosoma brucei		93	77
No Yes	Leishmania mexicana		94	77
No Yes	Leishmania major strain Friedlin		95	78
No Yes	Leishmania infantum JPCM5		97	78
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		98	78
No Yes	Aureococcus anophagefferens		88	74
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	103	80
No Yes	Phytophthora sojae 1.1		95	77
No Yes	Phytophthora infestans T30-4		107	85
No Yes	Phytophthora capsici		92	73
No Yes	Phaeodactylum tricornutum		76	66
No Yes	Fragilariopsis cylindrus		146	131
No Yes	Thalassiosira pseudonana		82	70
No Yes	Paramecium tetraurelia		273	222
No Yes	Tetrahymena thermophila SB210 1		119	89
No Yes	Babesia bovis T2Bo		67	55
No Yes	Theileria parva		67	57
No Yes	Theileria annulata		70	60
No Yes	Plasmodium falciparum 3D7		94	76
No Yes	Plasmodium vivax SaI-1		94	74
No Yes	Plasmodium knowlesi strain H		95	77
No Yes	Plasmodium yoelii ssp. yoelii 1		89	74
No Yes	Plasmodium chabaudi		92	85
No Yes	Plasmodium berghei ANKA		104	90
No Yes	Cryptosporidium hominis		51	43
No Yes	Cryptosporidium muris		66	53
No Yes	Cryptosporidium parvum Iowa II		60	50
No Yes	Neospora caninum Nc-Liverpool		110	87
No Yes	Neospora caninum		114	90
No Yes	Toxoplasma gondii ME49		113	90
No Yes	Naegleria gruberi		75	56
No Yes	Trichomonas vaginalis		219	184
No Yes	Guillardia theta		6	4
No Yes	Emiliania huxleyi CCMP1516		180	159
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis L550		3	3
No Yes	Leptospira interrogans ser. Lai 56601		3	3
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Paris)		4	4
No Yes	Treponema pallidum ssp. pallidum Nichols		1	1
No Yes	Rhodopirellula baltica SH 1		1	1
No Yes	Pirellula staleyi DSM 6068		2	2
No Yes	Denitrovibrio acetiphilus DSM 12809		3	3
No Yes	Chloroflexus sp. Y-400-fl		2	2
No Yes	Chloroflexus aggregans DSM 9485		2	2
No Yes	Chloroflexus aurantiacus J-10-fl		2	2
No Yes	Candidatus Koribacter versatilis Ellin345		1	1
No Yes	Candidatus Solibacter usitatus Ellin6076		4	4
No Yes	Pelodictyon phaeoclathratiforme BU-1		2	2
No Yes	Pelodictyon luteolum DSM 273		2	2
No Yes	Chlorobium chlorochromatii CaD3		1	1
No Yes	Chlorobium phaeobacteroides DSM 266		2	2
No Yes	Chlorobium phaeovibrioides DSM 265		2	2
No Yes	Chlorobium limicola DSM 245		2	2
No Yes	Chlorobaculum parvum NCIB 8327		2	2
No Yes	Chlorobium tepidum TLS		1	1
No Yes	Chloroherpeton thalassium ATCC 35110		2	2
No Yes	Prosthecochloris aestuarii DSM 271		2	2
No Yes	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2		1	1
No Yes	Parabacteroides distasonis ATCC 8503		3	3
No Yes	Porphyromonas gingivalis W83		1	1
No Yes	Bacteroides vulgatus ATCC 8482		4	4
No Yes	Bacteroides thetaiotaomicron VPI-5482		3	3
No Yes	Bacteroides fragilis NCTC 9343		4	4
No Yes	Chitinophaga pinensis DSM 2588		3	3
No Yes	Dyadobacter fermentans DSM 18053		1	1
No Yes	Cytophaga hutchinsonii ATCC 33406		1	1
No Yes	Pedobacter heparinus DSM 2366		3	3
No Yes	Flavobacteriaceae bacterium 3519-10		1	1
No Yes	Flavobacterium psychrophilum JIP02/86		1	1
No Yes	Flavobacterium johnsoniae UW101		1	1
No Yes	Blattabacterium sp. Bge		1	1
No Yes	Dictyoglomus turgidum DSM 6724		2	2
No Yes	Dictyoglomus thermophilum H-6-12		2	2
No Yes	Candidatus Protochlamydia amoebophila UWE25		1	1
No Yes	Coraliomargarita akajimensis DSM 45221		2	2
No Yes	Opitutus terrae PB90-1		1	1
No Yes	Methylacidiphilum infernorum V4		2	2
No Yes	Akkermansia muciniphila ATCC BAA-835		1	1
No Yes	Symbiobacterium thermophilum IAM 14863		5	5
No Yes	Candidatus Desulforudis audaxviator MP104C		1	1
No Yes	Pelotomaculum thermopropionicum SI		1	1
No Yes	Desulfotomaculum reducens MI-1		1	1
No Yes	Desulfotomaculum acetoxidans DSM 771		1	1
No Yes	Heliobacterium modesticaldum Ice1		1	1
No Yes	Carboxydothermus hydrogenoformans Z-2901		1	1
No Yes	Moorella thermoacetica ATCC 39073		1	1
No Yes	Ammonifex degensii KC4		1	1
No Yes	Nautilia profundicola AmH		1	1
No Yes	Sulfurospirillum deleyianum DSM 6946		1	1
No Yes	Arcobacter butzleri RM4018		1	1
No Yes	Campylobacter curvus 525.92		1	1
No Yes	Campylobacter concisus 13826		1	1
No Yes	Campylobacter fetus ssp. fetus 82-40		1	1
No Yes	Helicobacter hepaticus ATCC 51449		1	1
No Yes	Helicobacter acinonychis Sheeba		1	1
No Yes	Helicobacter pylori 26695		1	1
No Yes	Nitratiruptor sp. SB155-2		1	1
No Yes	Bdellovibrio bacteriovorus HD100		3	3
No Yes	Syntrophobacter fumaroxidans MPOB		2	2
No Yes	Desulfohalobium retbaense DSM 5692		2	2
No Yes	Desulfomicrobium baculatum DSM 4028		3	3
No Yes	Desulfovibrio magneticus RS-1		4	4
No Yes	Desulfovibrio vulgaris Hildenborough		3	3
No Yes	Desulfovibrio salexigens DSM 2638		3	3
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans G20		2	2
No Yes	Pelobacter propionicus DSM 2379		1	1
No Yes	Pelobacter carbinolicus DSM 2380		1	1
No Yes	Geobacter uraniireducens Rf4		2	2
No Yes	Geobacter sp. FRC-32		1	1
No Yes	Geobacter lovleyi SZ		1	1
No Yes	Geobacter bemidjiensis Bem		1	1
No Yes	Geobacter sulfurreducens PCA		1	1
No Yes	Geobacter metallireducens GS-15		1	1
No Yes	Haliangium ochraceum DSM 14365		2	2
No Yes	Sorangium cellulosum So ce 56		6	6
No Yes	Candidatus Accumulibacter phosphatis clade IIA UW-1		2	2
No Yes	Methylibium petroleiphilum PM1		1	1
No Yes	Leptothrix cholodnii SP-6		1	1
No Yes	Ralstonia eutropha JMP134		1	1
No Yes	Ralstonia metallidurans CH34		1	1
No Yes	Verminephrobacter eiseniae EF01-2		2	2
No Yes	Delftia acidovorans SPH-1		3	3
No Yes	Polaromonas sp. JS666		2	2
No Yes	Polaromonas naphthalenivorans CJ2		2	2
No Yes	Variovorax paradoxus S110		2	2
No Yes	Rhodoferax ferrireducens T118		1	1
No Yes	Diaphorobacter sp. TPSY		3	3
No Yes	Acidovorax sp. JS42		3	3
No Yes	Acidovorax citrulli AAC00-1		3	3
No Yes	Comamonas sp. CNB-1		3	3
No Yes	Tolumonas auensis DSM 9187		1	1
No Yes	Aeromonas salmonicida ssp. salmonicida A449		2	2
No Yes	Aeromonas hydrophila ssp. hydrophila ATCC 7966		2	2
No Yes	Aliivibrio salmonicida LFI1238		2	2
No Yes	Vibrio fischeri ES114		2	2
No Yes	Vibrio parahaemolyticus RIMD 2210633		2	2
No Yes	Vibrio harveyi ATCC BAA-1116		2	2
No Yes	Vibrio sp. Ex25		2	2
No Yes	Vibrio splendidus LGP32		2	2
No Yes	Vibrio vulnificus YJ016 (Good annotation)		1	1
No Yes	Vibrio cholerae O1 biov. El Tor N16961		1	1
No Yes	Photobacterium profundum SS9		2	2
No Yes	Psychromonas ingrahamii 37		2	2
No Yes	Shewanella piezotolerans WP3		1	1
No Yes	Shewanella loihica PV-4		1	1
No Yes	Shewanella halifaxensis HAW-EB4		1	1
No Yes	Shewanella sediminis HAW-EB3		1	1
No Yes	Shewanella denitrificans OS217		1	1
No Yes	Shewanella pealeana ATCC 700345		1	1
No Yes	Shewanella oneidensis MR-1		1	1
No Yes	Shewanella baltica OS155		1	1
No Yes	Shewanella woodyi ATCC 51908		1	1
No Yes	Shewanella sp. MR-7		1	1
No Yes	Shewanella amazonensis SB2B		1	1
No Yes	Shewanella violacea DSS12		1	1
No Yes	Shewanella frigidimarina NCIMB 400		1	1
No Yes	Shewanella putrefaciens CN-32		1	1
No Yes	Colwellia psychrerythraea 34H		2	2
No Yes	Pseudoalteromonas atlantica T6c		2	2
No Yes	Pseudoalteromonas haloplanktis TAC125		2	2
No Yes	Saccharophagus degradans 2-40		1	1
No Yes	Alteromonas macleodii Deep ecotype		2	2
No Yes	Hahella chejuensis KCTC 2396		2	2
No Yes	Marinomonas sp. MWYL1		1	1
No Yes	Methylococcus capsulatus Bath		2	2
No Yes	Dichelobacter nodosus VCS1703A		1	1
No Yes	Halothiobacillus neapolitanus c2		1	1
No Yes	Alkalilimnicola ehrlichii MLHE-1		1	1
No Yes	Allochromatium vinosum DSM 180		3	3
No Yes	Nitrosococcus halophilus Nc4		3	3
No Yes	Nitrosococcus oceani ATCC 19707		2	2
No Yes	Coxiella burnetii RSA 493		2	2
No Yes	Legionella longbeachae NSW150		1	1
No Yes	Legionella pneumophila ssp. pneumophila Philadelphia 1		1	1
No Yes	Kangiella koreensis DSM 16069		1	1
No Yes	Psychrobacter arcticus 273-4		1	1
No Yes	Psychrobacter cryohalolentis K5		1	1
No Yes	Acinetobacter sp. ADP1		1	1
No Yes	Acinetobacter baumannii ATCC 17978		1	1
No Yes	Gloeobacter violaceus PCC 7421		4	4
No Yes	Acaryochloris marina MBIC11017		5	5
No Yes	Prochlorococcus marinus MIT 9313		3	3
No Yes	Nostoc punctiforme PCC 73102		5	5
No Yes	Nostoc sp. PCC 7120		8	8
No Yes	Anabaena variabilis ATCC 29413		8	8
No Yes	Trichodesmium erythraeum IMS101		4	4
No Yes	Thermosynechococcus elongatus BP-1		3	3
No Yes	cyanobacterium UCYN-A		4	4
No Yes	Cyanothece sp. ATCC 51142		6	6
No Yes	Synechocystis sp. PCC 6803		3	3
No Yes	Synechococcus elongatus PCC 6301		3	3
No Yes	Microcystis aeruginosa NIES-843		3	3
No Yes	Methanospirillum hungatei JF-1		4	4
No Yes	Methanoculleus marisnigri JR1		1	1
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	534	365
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	228	176
No Yes	Cryptococcus neoformans var. grubii H99		93	76
No Yes	Cryptococcus neoformans B-3501A		98	78
No Yes	Ajellomyces dermatitidis ER-3		86	71
No Yes	Histoplasma capsulatum H143		79	64
No Yes	Histoplasma capsulatum H88		86	69
No Yes	Histoplasma capsulatum G186AR		89	72
No Yes	Paracoccidioides brasiliensis Pb01		86	69
No Yes	Paracoccidioides brasiliensis Pb03		86	67
No Yes	Coccidioides posadasii str. Silveira		90	73
No Yes	Coccidioides immitis RMSCC 3703		80	63
No Yes	Coccidioides immitis RMSCC 2394		91	73
No Yes	Coccidioides immitis H538.4		77	62
No Yes	Aspergillus fumigatus A1163		92	74
No Yes	Candida albicans WO-1		75	59
No Yes	Saccharomyces cerevisiae YJM789		80	59
No Yes	Saccharomyces cerevisiae RM11-1a		71	53
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	80	59
No Yes	Schizosaccharomyces pombe 972h-		96	76
No Yes	Batrachochytrium dendrobatidis JAM81		99	82
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	356	302
No Yes	Plasmodium falciparum HB3		88	70
No Yes	Plasmodium falciparum Dd2		58	48
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis JB197		3	3
No Yes	Leptospira interrogans ser. Copenhageni Fiocruz L1-130		3	3
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Ames)		4	4
No Yes	Treponema pallidum ssp. pallidum SS14		1	1
No Yes	Chlorobium phaeobacteroides BS1		2	2
No Yes	Porphyromonas gingivalis ATCC 33277		1	1
No Yes	Bacteroides fragilis YCH46		4	4
No Yes	Blattabacterium sp. BPLAN		1	1
No Yes	Desulfitobacterium hafniense DCB-2		1	1
No Yes	Helicobacter pylori B38		1	1
No Yes	Helicobacter pylori P12		1	1
No Yes	Helicobacter pylori G27		1	1
No Yes	Helicobacter pylori Shi470		1	1
No Yes	Helicobacter pylori HPAG1		1	1
No Yes	Helicobacter pylori J99		1	1
No Yes	Desulfovibrio vulgaris DP4		3	3
No Yes	Desulfovibrio vulgaris Miyazaki F		3	3
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans ATCC 27774		3	3
No Yes	Geobacter sp. M21		1	1
No Yes	Vibrio fischeri MJ11		2	2
No Yes	Vibrio vulnificus CMCP6 (Poor annotation)		1	1
No Yes	Vibrio cholerae M66-2		1	1
No Yes	Vibrio cholerae O395		1	1
No Yes	Vibrio cholerae MJ-1236		1	1
No Yes	Shewanella sp. W3-18-1		1	1
No Yes	Shewanella sp. ANA-3		1	1
No Yes	Shewanella baltica OS223		1	1
No Yes	Shewanella baltica OS185		1	1
No Yes	Shewanella baltica OS195		1	1
No Yes	Shewanella sp. MR-4		1	1
No Yes	Coxiella burnetii CbuK_Q154		2	2
No Yes	Coxiella burnetii CbuG_Q212		2	2
No Yes	Coxiella burnetii Dugway 5J108-111		2	2
No Yes	Coxiella burnetii RSA 331		2	2
No Yes	Legionella pneumophila Corby		1	1
No Yes	Legionella pneumophila Paris		1	1
No Yes	Acinetobacter baumannii AB307-0294		1	1
No Yes	Acinetobacter baumannii AYE		1	1
No Yes	Acinetobacter baumannii SDF		1	1
No Yes	Acinetobacter baumannii AB0057		1	1
No Yes	Acinetobacter baumannii ACICU		1	1
No Yes	Prochlorococcus marinus NATL1A		3	3
No Yes	Prochlorococcus marinus MIT 9301		2	2
No Yes	Prochlorococcus marinus MIT 9515		3	3
No Yes	Prochlorococcus marinus AS9601		2	2
No Yes	Prochlorococcus marinus ssp. marinus CCMP1375		3	3
No Yes	Prochlorococcus marinus ssp. pastoris CCMP1986		3	3
No Yes	Prochlorococcus marinus MIT 9215		2	2
No Yes	Prochlorococcus marinus MIT 9211		3	3
No Yes	Prochlorococcus marinus MIT 9312		3	3
No Yes	Prochlorococcus marinus MIT 9303		3	3
No Yes	Prochlorococcus marinus NATL2A		3	3
No Yes	Cyanothece sp. PCC 8802		4	4
No Yes	Cyanothece sp. PCC 7425		6	6
No Yes	Cyanothece sp. PCC 7424		6	6
No Yes	Cyanothece sp. PCC 8801		4	4
No Yes	Synechococcus sp. JA-2-3Ba(2-13) (Poor annotation)		4	4
No Yes	Synechococcus sp. JA-3-3Ab (Poor annotation)		4	4
No Yes	Synechococcus sp. CC9902 (Poor annotation)		4	4
No Yes	Synechococcus sp. RCC307		3	3
No Yes	Synechococcus sp. CC9605 (Poor annotation)		4	4
No Yes	Synechococcus sp. WH 8102 (Good annotation)		4	4
No Yes	Synechococcus sp. CC9311		3	3
No Yes	Synechococcus sp. WH 7803		3	3
No Yes	Synechococcus sp. PCC 7002		3	3
No Yes	Synechococcus elongatus PCC 7942		3	3
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	303	222
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		42	40
No Yes	Lotus japonicus (Early assembly)		83	76
No Yes	Prunus persica (Early draft)	Peach	305	253
No Yes	Manihot esculenta (Early draft)	Cassava	590	473
No Yes	Ricinus communis (Early assembly)	Castor bean	240	201
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	360	290
No Yes	Phoenix dactylifera (Early draft)	Date palm	265	234
No Yes	Trypanosoma vivax (Parial)		82	69
No Yes	Trypanosoma congolense (Partial)		96	81
No Yes	Toxoplasma gondii GT1 (Early assembly)		103	83
No Yes	Toxoplasma gondii VEG (Early assembly)		103	85
No Yes	Toxoplasma gondii RH (Archived)		111	87
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	333	245
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	305	223
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	217	174
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	313	231
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	345	258
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	392	304
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	204	160
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	237	180
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	226	162
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	390	286
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	343	242
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	195	156
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	248	183
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	312	224
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	219	167
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	227	173
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	221	171
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	242	188
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	327	248
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	194	146
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	279	204
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	388	305
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	195	155
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	294	215
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	280	216
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	277	202
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	207	156
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	208	166
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	241	182
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	202	153
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	263	206
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	221	176
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	236	180
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	331	241
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	222	177
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	261	196
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	249	190
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	235	173
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	243	181
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	248	182
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	319	234
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	335	242
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	323	237
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	321	247
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	312	225
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		127	100
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		149	118
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	134	110
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	534	365
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	183	146
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	206	158
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	176	140
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	151	119
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	151	119
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	337	271
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	596	493
No Yes	NCBI viral sequences (Viral)		14	14
No Yes	PDB chains (SCOP 1.73) (PDB)		124	123
No Yes	TargetDB (Targets)		798	676
No Yes	UniProt 15.0 (UniProt)		21691	17432
No Yes	UniProt 15.0 viral sequences (Viral)		18	18