Protein kinase-like (PK-like) superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		237513	237513
No Yes	Homo sapiens 49_36k (all transcripts)	Human	1294	1274
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	910	893
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	488	477
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	600	588
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	976	961
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	1232	1212
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	476	465
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	491	480
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	395	386
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	941	918
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	1144	1112
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	459	448
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	497	484
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	581	570
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	431	419
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	491	478
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	450	440
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	465	454
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	722	704
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	338	331
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	509	496
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	729	713
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	429	418
No Yes	Equus caballus 49_2 (all transcripts)	Horse	617	600
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	488	477
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	510	497
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	381	374
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	423	415
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	491	482
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	463	456
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	481	474
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	435	425
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	495	484
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	1001	984
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	804	792
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	525	514
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	642	634
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	516	505
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	652	641
No Yes	Xenopus laevis	African clawed frog	1014	995
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	865	853
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	1774	1753
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	845	828
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	783	766
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	788	765
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	2221	2162
No Yes	Branchiostoma floridae 1.0	Florida lancelet	1085	1065
No Yes	Ciona savignyi 49_2f (all transcripts)		698	689
No Yes	Ciona intestinalis 49_2i (all transcripts)		523	519
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	828	815
No Yes	Helobdella robusta		506	503
No Yes	Capitella sp. I		441	438
No Yes	Bombyx mori	Domestic silkworm	284	277
No Yes	Nasonia vitripennis	Jewel wasp	253	248
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	684	679
No Yes	Drosophila grimshawi 1.3		304	299
No Yes	Drosophila willistoni 1.3		314	308
No Yes	Drosophila pseudoobscura 2.3		298	291
No Yes	Drosophila persimilis 1.3		291	286
No Yes	Drosophila yakuba 1.3		301	296
No Yes	Drosophila simulans 1.3		291	286
No Yes	Drosophila sechellia 1.3		307	302
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	618	611
No Yes	Drosophila erecta 1.3		297	291
No Yes	Drosophila ananassae 1.3		297	292
No Yes	Drosophila virilis 1.2		294	287
No Yes	Drosophila mojavensis 1.3		294	288
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	337	330
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	328	324
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	277	269
No Yes	Tribolium castaneum 3.0	Red flour beetle	289	281
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	254	247
No Yes	Acyrthosiphon pisum	Pea aphid	240	237
No Yes	Daphnia pulex	Common water flea	491	474
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	247	244
No Yes	Lottia gigantea		369	364
No Yes	Pristionchus pacificus		589	579
No Yes	Meloidogyne incognita	Southern root-knot nematode	401	396
No Yes	Meloidogyne hapla		275	274
No Yes	Brugia malayi	Agent of lymphatic filariasis	170	169
No Yes	Caenorhabditis japonica		397	393
No Yes	Caenorhabditis brenneri		397	390
No Yes	Caenorhabditis remanei		599	589
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	805	788
No Yes	Caenorhabditis briggsae 2		501	492
No Yes	Schistosoma mansoni		303	297
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	435	430
No Yes	Hydra magnipapillata		436	429
No Yes	Trichoplax adhaerens		269	265
No Yes	Proterospongia sp. ATCC 50818		474	462
No Yes	Monosiga brevicollis		451	438
No Yes	Capsaspora owczarzaki ATCC 30864		420	416
No Yes	Malassezia globosa CBS 7966		99	99
No Yes	Ustilago maydis		109	108
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		208	207
No Yes	Melampsora laricis-populina		242	242
No Yes	Sporobolomyces roseus IAM 13481		117	116
No Yes	Serpula lacrymans var. lacrymans S7.9		222	220
No Yes	Coprinopsis cinerea okayama7 130		317	308
No Yes	Pleurotus ostreatus	Oyster mushroom	302	296
No Yes	Laccaria bicolor S238N-H82		383	381
No Yes	Agaricus bisporus var. bisporus		216	210
No Yes	Schizophyllum commune		284	278
No Yes	Heterobasidion annosum		230	229
No Yes	Phanerochaete chrysosporium RP-78 2.1		240	236
No Yes	Postia placenta		413	407
No Yes	Tremella mesenterica		135	134
No Yes	Cryptococcus neoformans JEC21		105	105
No Yes	Magnaporthe grisea 70-15		164	162
No Yes	Podospora anserina		183	182
No Yes	Sporotrichum thermophile ATCC 42464		209	208
No Yes	Thielavia terrestris NRRL 8126		235	233
No Yes	Chaetomium globosum CBS 148.51		216	215
No Yes	Neurospora tetrasperma		144	143
No Yes	Neurospora discreta FGSC 8579		129	128
No Yes	Neurospora crassa OR74A		140	138
No Yes	Cryphonectria parasitica	Chestnut blight fungus	173	172
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		258	257
No Yes	Nectria haematococca mpVI		274	273
No Yes	Fusarium verticillioides 7600		192	190
No Yes	Fusarium graminearum		172	171
No Yes	Trichoderma atroviride		178	176
No Yes	Trichoderma reesei 1.2		153	152
No Yes	Trichoderma virens Gv29-8		195	194
No Yes	Verticillium dahliae VdLs.17		194	193
No Yes	Verticillium albo-atrum VaMs.102		153	152
No Yes	Botrytis cinerea B05.10		149	148
No Yes	Sclerotinia sclerotiorum		176	174
No Yes	Alternaria brassicicola		127	125
No Yes	Pyrenophora tritici-repentis		159	158
No Yes	Cochliobolus heterostrophus		133	132
No Yes	Stagonospora nodorum		214	211
No Yes	Mycosphaerella fijiensis CIRAD86		143	142
No Yes	Mycosphaerella graminicola IPO323		196	194
No Yes	Ajellomyces dermatitidis SLH14081		248	245
No Yes	Histoplasma capsulatum class NAmI strain WU24		254	252
No Yes	Microsporum gypseum		246	244
No Yes	Arthroderma benhamiae CBS 112371		238	236
No Yes	Microsporum canis CBS 113480		340	339
No Yes	Trichophyton equinum CBS 127.97		232	230
No Yes	Trichophyton verrucosum HKI 0517		240	238
No Yes	Trichophyton tonsurans CBS 112818		237	236
No Yes	Trichophyton rubrum CBS 118892		239	238
No Yes	Paracoccidioides brasiliensis Pb18		169	168
No Yes	Coccidioides posadasii RMSCC 3488		263	259
No Yes	Coccidioides immitis RS		262	260
No Yes	Uncinocarpus reesii 1704		287	286
No Yes	Aspergillus fumigatus Af293		159	157
No Yes	Neosartorya fischeri NRRL 181		171	169
No Yes	Penicillium chrysogenum Wisconsin 54-1255		316	310
No Yes	Penicillium marneffei ATCC 18224		168	166
No Yes	Aspergillus carbonarius ITEM 5010		233	232
No Yes	Aspergillus terreus NIH2624		221	220
No Yes	Aspergillus oryzae RIB40		198	197
No Yes	Aspergillus niger ATCC 1015		156	155
No Yes	Aspergillus flavus NRRL3357		207	206
No Yes	Aspergillus clavatus NRRL 1		180	178
No Yes	Aspergillus nidulans FGSC A4		141	139
No Yes	Tuber melanosporum Vittad	Perigord truffle	135	133
No Yes	Candida dubliniensis CD36		112	111
No Yes	Candida tropicalis MYA-3404		118	117
No Yes	Candida parapsilosis		114	113
No Yes	Candida albicans SC5314		113	112
No Yes	Yarrowia lipolytica CLIB122		100	99
No Yes	Candida lusitaniae ATCC 42720		114	113
No Yes	Vanderwaltozyma polyspora DSM 70294		118	117
No Yes	Candida glabrata CBS138		127	126
No Yes	Kluyveromyces thermotolerans CBS 6340		108	107
No Yes	Lachancea kluyveri		110	109
No Yes	Kluyveromyces waltii		108	107
No Yes	Lodderomyces elongisporus NRRL YB-4239		114	113
No Yes	Ashbya gossypii ATCC 10895		110	109
No Yes	Debaromyces hansenii		168	156
No Yes	Zygosaccharomyces rouxii		107	106
No Yes	Saccharomyces mikatae MIT		135	134
No Yes	Saccharomyces paradoxus MIT		136	136
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	135	134
No Yes	Saccharomyces bayanus MIT		141	141
No Yes	Candida guilliermondii ATCC 6260		216	215
No Yes	Pichia stipitis CBS 6054		114	113
No Yes	Pichia pastoris GS115		108	107
No Yes	Kluyveromyces lactis		107	106
No Yes	Schizosaccharomyces octosporus yFS286		125	124
No Yes	Schizosaccharomyces japonicus yFS275		129	128
No Yes	Schizosaccharomyces pombe	Fission yeast	126	125
No Yes	Allomyces macrogynus ATCC 38327		390	383
No Yes	Rhizopus oryzae RA 99-880		328	327
No Yes	Phycomyces blakesleeanus		260	259
No Yes	Mucor circinelloides		276	275
No Yes	Encephalitozoon intestinalis		38	38
No Yes	Encephalitozoon cuniculi		38	38
No Yes	Spizellomyces punctatus DAOM BR117		175	174
No Yes	Batrachochytrium dendrobatidis JEL423		200	199
No Yes	Dictyostelium discoideum		306	297
No Yes	Dictyostelium purpureum		305	298
No Yes	Entamoeba dispar		396	382
No Yes	Entamoeba invadens		922	912
No Yes	Entamoeba histolytica 1		422	408
No Yes	Arabidopsis lyrata	Lyrate rockcress	1131	1127
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	1309	1308
No Yes	Carica papaya	Papaya	791	789
No Yes	Medicago truncatula	Barrel medic	953	951
No Yes	Glycine max	Soybean	2320	2312
No Yes	Cucumis sativus	Cucumber	1423	1418
No Yes	Populus trichocarpa 1.1	Black cottonwood	1953	1947
No Yes	Vitis vinifera	Wine grape	1507	1475
No Yes	Brachypodium distachyon		1516	1500
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	2149	2106
No Yes	Zea mays subsp. mays	Maize	2132	2110
No Yes	Sorghum bicolor	Sorghum	1337	1312
No Yes	Selaginella moellendorffii		1336	1329
No Yes	Physcomitrella patens subsp. patens		775	773
No Yes	Coccomyxa sp. C-169		240	239
No Yes	Chlorella sp. NC64A		274	273
No Yes	Chlorella vulgaris		246	245
No Yes	Volvox carteri f. nagariensis		476	471
No Yes	Chlamydomonas reinhardtii 4.0		634	631
No Yes	Ostreococcus sp. RCC809		141	141
No Yes	Ostreococcus lucimarinus CCE9901		150	150
No Yes	Ostreococcus tauri		143	142
No Yes	Micromonas sp. RCC299		180	179
No Yes	Micromonas pusilla CCMP1545		173	172
No Yes	Cyanidioschyzon merolae		86	85
No Yes	Giardia lamblia		297	290
No Yes	Trypanosoma cruzi strain CL Brener		446	442
No Yes	Trypanosoma brucei		199	198
No Yes	Leishmania mexicana		228	225
No Yes	Leishmania major strain Friedlin		231	229
No Yes	Leishmania infantum JPCM5		226	225
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		221	220
No Yes	Aureococcus anophagefferens		372	372
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	452	437
No Yes	Phytophthora sojae 1.1		503	477
No Yes	Phytophthora infestans T30-4		507	498
No Yes	Phytophthora capsici		441	433
No Yes	Phaeodactylum tricornutum		187	187
No Yes	Fragilariopsis cylindrus		378	378
No Yes	Thalassiosira pseudonana		216	214
No Yes	Paramecium tetraurelia		2737	2716
No Yes	Tetrahymena thermophila SB210 1		1134	1075
No Yes	Babesia bovis T2Bo		59	59
No Yes	Theileria parva		67	67
No Yes	Theileria annulata		70	70
No Yes	Plasmodium falciparum 3D7		107	106
No Yes	Plasmodium vivax SaI-1		90	89
No Yes	Plasmodium knowlesi strain H		88	88
No Yes	Plasmodium yoelii ssp. yoelii 1		87	87
No Yes	Plasmodium chabaudi		118	118
No Yes	Plasmodium berghei ANKA		103	103
No Yes	Cryptosporidium hominis		88	88
No Yes	Cryptosporidium muris		96	96
No Yes	Cryptosporidium parvum Iowa II		96	96
No Yes	Neospora caninum Nc-Liverpool		181	181
No Yes	Neospora caninum		154	154
No Yes	Toxoplasma gondii ME49		182	181
No Yes	Naegleria gruberi		544	533
No Yes	Trichomonas vaginalis		1096	1095
No Yes	Guillardia theta		7	7
No Yes	Emiliania huxleyi CCMP1516		762	758
No Yes	Acholeplasma laidlawii PG-8A		1	1
No Yes	Mesoplasma florum L1		2	2
No Yes	Ureaplasma parvum ser. 3 ATCC 700970		2	2
No Yes	Ureaplasma urealyticum ser. 10 ATCC 33699		3	2
No Yes	Mycoplasma mycoides ssp. mycoides SC PG1		2	2
No Yes	Mycoplasma capricolum ssp. capricolum ATCC 27343		2	2
No Yes	Mycoplasma crocodyli MP145		5	4
No Yes	Mycoplasma conjunctivae		3	3
No Yes	Mycoplasma penetrans HF-2		4	4
No Yes	Mycoplasma mobile 163K		3	3
No Yes	Mycoplasma arthritidis 158L3-1		4	3
No Yes	Mycoplasma agalactiae PG2		4	3
No Yes	Mycoplasma synoviae 53		6	6
No Yes	Mycoplasma pulmonis UAB CTIP		3	3
No Yes	Mycoplasma pneumoniae M129		2	2
No Yes	Mycoplasma hyopneumoniae 232		2	2
No Yes	Mycoplasma hominis		3	3
No Yes	Mycoplasma genitalium G37		2	2
No Yes	Mycoplasma gallisepticum R		2	2
No Yes	Thermanaerovibrio acidaminovorans DSM 6589		1	1
No Yes	Brachyspira hyodysenteriae WA1		5	5
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis L550		9	9
No Yes	Leptospira interrogans ser. Lai 56601		10	10
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Paris)		6	6
No Yes	Treponema pallidum ssp. pallidum Nichols		1	1
No Yes	Treponema denticola ATCC 35405		4	4
No Yes	Rhodopirellula baltica SH 1		64	64
No Yes	Pirellula staleyi DSM 6068		37	36
No Yes	Gardnerella vaginalis 409-05		10	10
No Yes	Bifidobacterium longum NCC2705		11	11
No Yes	Bifidobacterium animalis ssp. lactis AD011		10	10
No Yes	Bifidobacterium dentium Bd1		11	11
No Yes	Bifidobacterium adolescentis ATCC 15703		10	10
No Yes	Kineococcus radiotolerans SRS30216		23	23
No Yes	Catenulispora acidiphila DSM 44928		79	79
No Yes	Stackebrandtia nassauensis DSM 44728		71	70
No Yes	Acidothermus cellulolyticus 11B		8	8
No Yes	Nakamurella multipartita DSM 44233		29	29
No Yes	Geodermatophilus obscurus DSM 43160		25	25
No Yes	Frankia sp. CcI3		46	45
No Yes	Frankia alni ACN14a		89	88
No Yes	Thermobifida fusca YX		32	31
No Yes	Thermomonospora curvata DSM 43183		66	66
No Yes	Streptosporangium roseum DSM 43021		106	106
No Yes	Streptomyces griseus ssp. griseus NBRC 13350		63	62
No Yes	Streptomyces avermitilis MA-4680		57	57
No Yes	Streptomyces scabiei 87.22		88	88
No Yes	Streptomyces coelicolor A3(2)		61	59
No Yes	Actinosynnema mirum DSM 43827		55	55
No Yes	Saccharomonospora viridis DSM 43017		26	25
No Yes	Saccharopolyspora erythraea NRRL 2338		44	43
No Yes	Kribbella flavida DSM 17836		77	76
No Yes	Nocardioides sp. JS614		25	25
No Yes	Propionibacterium acnes KPA171202		9	9
No Yes	Salinispora arenicola CNS-205		22	22
No Yes	Salinispora tropica CNB-440		23	23
No Yes	Gordonia bronchialis DSM 43247		34	34
No Yes	Rhodococcus jostii RHA1		41	41
No Yes	Rhodococcus opacus B4		47	47
No Yes	Rhodococcus erythropolis PR4		25	25
No Yes	Nocardia farcinica IFM 10152		40	40
No Yes	Mycobacterium abscessus		28	28
No Yes	Mycobacterium sp. MCS		35	35
No Yes	Mycobacterium avium ssp. paratuberculosis K-10		24	24
No Yes	Mycobacterium vanbaalenii PYR-1		33	33
No Yes	Mycobacterium tuberculosis H37Rv		19	19
No Yes	Mycobacterium bovis AF2122/97		19	19
No Yes	Mycobacterium ulcerans Agy99		22	22
No Yes	Mycobacterium gilvum PYR-GCK		33	32
No Yes	Mycobacterium marinum M		41	41
No Yes	Mycobacterium smegmatis MC2 155		33	33
No Yes	Mycobacterium leprae TN		7	7
No Yes	Corynebacterium aurimucosum		9	9
No Yes	Corynebacterium kroppenstedtii DSM 44385		6	6
No Yes	Corynebacterium efficiens YS-314		8	8
No Yes	Corynebacterium urealyticum DSM 7109		11	11
No Yes	Corynebacterium jeikeium K411		9	9
No Yes	Corynebacterium glutamicum ATCC 13032 Kitasato		9	9
No Yes	Corynebacterium diphtheriae NCTC 13129		6	6
No Yes	Tropheryma whipplei Twist		5	5
No Yes	Sanguibacter keddieii DSM 10542		19	19
No Yes	Kytococcus sedentarius DSM 20547		12	12
No Yes	Beutenbergia cavernae DSM 12333		44	44
No Yes	Leifsonia xyli ssp. xyli CTCB07		9	9
No Yes	Clavibacter michiganensis ssp. michiganensis NCPPB 382		14	14
No Yes	Jonesia denitrificans DSM 20603		11	10
No Yes	Brachybacterium faecium DSM 4810		25	24
No Yes	Xylanimonas cellulosilytica DSM 15894		21	21
No Yes	Kocuria rhizophila DC2201		12	12
No Yes	Rothia mucilaginosa DY-18		5	5
No Yes	Arthrobacter sp. FB24		15	15
No Yes	Arthrobacter chlorophenolicus A6		15	15
No Yes	Arthrobacter aurescens TC1		14	14
No Yes	Renibacterium salmoninarum ATCC 33209		12	12
No Yes	Micrococcus luteus NCTC 2665		9	9
No Yes	Cryptobacterium curtum DSM 15641		5	5
No Yes	Eggerthella lenta DSM 2243		7	7
No Yes	Slackia heliotrinireducens DSM 20476		16	16
No Yes	Atopobium parvulum DSM 20469		5	5
No Yes	Conexibacter woesei DSM 14684		22	22
No Yes	Rubrobacter xylanophilus DSM 9941		12	12
No Yes	Acidimicrobium ferrooxidans DSM 10331		7	7
No Yes	Denitrovibrio acetiphilus DSM 12809		3	3
No Yes	Deferribacter desulfuricans SSM1		3	3
No Yes	Kosmotoga olearia TBF 19.5.1		2	2
No Yes	Petrotoga mobilis SJ95		1	1
No Yes	Thermotoga lettingae TMO		2	2
No Yes	Thermotoga sp. RQ2		1	1
No Yes	Thermotoga naphthophila RKU-10		1	1
No Yes	Thermotoga petrophila RKU-1		1	1
No Yes	Thermotoga maritima MSB8		1	1
No Yes	Dehalococcoides sp. CBDB1		1	1
No Yes	Dehalococcoides ethenogenes 195		1	1
No Yes	Thermomicrobium roseum DSM 5159		5	5
No Yes	Sphaerobacter thermophilus DSM 20745		14	14
No Yes	Herpetosiphon aurantiacus ATCC 23779		48	47
No Yes	Roseiflexus sp. RS-1		34	33
No Yes	Roseiflexus castenholzii DSM 13941		33	32
No Yes	Chloroflexus sp. Y-400-fl		23	23
No Yes	Chloroflexus aggregans DSM 9485		23	22
No Yes	Chloroflexus aurantiacus J-10-fl		23	23
No Yes	Sulfurihydrogenibium sp. YO3AOP1		2	2
No Yes	Sulfurihydrogenibium azorense Az-Fu1		2	2
No Yes	Persephonella marina EX-H1		3	3
No Yes	Hydrogenobaculum sp. Y04AAS1		2	2
No Yes	Thermocrinis albus DSM 14484		3	3
No Yes	Aquifex aeolicus VF5		3	3
No Yes	Hydrogenobacter thermophilus TK-6		3	3
No Yes	Gemmatimonas aurantiaca T-27		33	32
No Yes	Fibrobacter succinogenes ssp. succinogenes S85		15	15
No Yes	Candidatus Koribacter versatilis Ellin345		34	34
No Yes	Candidatus Solibacter usitatus Ellin6076		89	89
No Yes	Acidobacterium capsulatum ATCC 51196		6	5
No Yes	Elusimicrobium minutum Pei191		6	5
No Yes	Pelodictyon phaeoclathratiforme BU-1		4	4
No Yes	Pelodictyon luteolum DSM 273		2	2
No Yes	Chlorobium chlorochromatii CaD3		3	3
No Yes	Chlorobium phaeobacteroides DSM 266		2	2
No Yes	Chlorobium phaeovibrioides DSM 265		3	3
No Yes	Chlorobium limicola DSM 245		2	2
No Yes	Chlorobaculum parvum NCIB 8327		2	2
No Yes	Chlorobium tepidum TLS		2	2
No Yes	Chloroherpeton thalassium ATCC 35110		2	2
No Yes	Prosthecochloris aestuarii DSM 271		3	3
No Yes	Prevotella ruminicola 23		7	7
No Yes	Parabacteroides distasonis ATCC 8503		4	4
No Yes	Porphyromonas gingivalis W83		1	1
No Yes	Bacteroides vulgatus ATCC 8482		3	3
No Yes	Bacteroides thetaiotaomicron VPI-5482		5	5
No Yes	Bacteroides fragilis NCTC 9343		2	2
No Yes	Candidatus Amoebophilus asiaticus 5a2		6	6
No Yes	Salinibacter ruber DSM 13855		8	8
No Yes	Rhodothermus marinus DSM 4252		5	5
No Yes	Chitinophaga pinensis DSM 2588		11	11
No Yes	Dyadobacter fermentans DSM 18053		5	5
No Yes	Cytophaga hutchinsonii ATCC 33406		5	5
No Yes	Spirosoma linguale DSM 74		12	12
No Yes	Pedobacter heparinus DSM 2366		2	2
No Yes	Zunongwangia profunda SM-A87		4	4
No Yes	Gramella forsetii KT0803		4	4
No Yes	Robiginitalea biformata HTCC2501		5	5
No Yes	Flavobacteriaceae bacterium 3519-10		2	2
No Yes	Capnocytophaga ochracea DSM 7271		1	1
No Yes	Flavobacterium psychrophilum JIP02/86		2	2
No Yes	Flavobacterium johnsoniae UW101		3	3
No Yes	Dictyoglomus turgidum DSM 6724		1	1
No Yes	Dictyoglomus thermophilum H-6-12		2	2
No Yes	Candidatus Protochlamydia amoebophila UWE25		4	4
No Yes	Chlamydophila pneumoniae TW-183		3	3
No Yes	Chlamydophila caviae GPIC		3	3
No Yes	Chlamydophila felis Fe/C-56		3	3
No Yes	Chlamydophila abortus S26/3		3	3
No Yes	Chlamydia muridarum Nigg		3	3
No Yes	Chlamydia trachomatis D/UW-3/CX		3	3
No Yes	Coraliomargarita akajimensis DSM 45221		11	10
No Yes	Opitutus terrae PB90-1		8	8
No Yes	Methylacidiphilum infernorum V4		2	2
No Yes	Akkermansia muciniphila ATCC BAA-835		12	12
No Yes	Thermodesulfovibrio yellowstonii DSM 11347		2	2
No Yes	Streptobacillus moniliformis DSM 12112		1	1
No Yes	Sebaldella termitidis ATCC 33386		7	7
No Yes	Leptotrichia buccalis DSM 1135		5	5
No Yes	Fusobacterium nucleatum ssp. nucleatum ATCC 25586		6	6
No Yes	Thermobaculum terrenum ATCC BAA-798		14	14
No Yes	Deinococcus deserti VCD115		13	13
No Yes	Deinococcus geothermalis DSM 11300		10	10
No Yes	Deinococcus radiodurans R1		19	19
No Yes	Meiothermus ruber DSM 1279		7	7
No Yes	Thermus thermophilus HB27 (First sequenced)		6	6
No Yes	Natranaerobius thermophilus JW/NM-WN-LF		7	7
No Yes	Symbiobacterium thermophilum IAM 14863		3	3
No Yes	Anaerococcus prevotii DSM 20548		4	4
No Yes	Finegoldia magna ATCC 29328		3	3
No Yes	Clostridiales genomosp. BVAB3 UPII9-5		2	2
No Yes	Anaerocellum thermophilum DSM 6725		5	5
No Yes	Candidatus Desulforudis audaxviator MP104C		4	3
No Yes	Pelotomaculum thermopropionicum SI		2	2
No Yes	Desulfitobacterium hafniense Y51		6	5
No Yes	Desulfotomaculum reducens MI-1		3	3
No Yes	Desulfotomaculum acetoxidans DSM 771		5	5
No Yes	Eubacterium rectale ATCC 33656		9	9
No Yes	Eubacterium eligens ATCC 27750		5	5
No Yes	Syntrophomonas wolfei ssp. wolfei Goettingen		5	5
No Yes	Heliobacterium modesticaldum Ice1		7	7
No Yes	Alkaliphilus oremlandii OhILAs		6	6
No Yes	Alkaliphilus metalliredigens QYMF		8	8
No Yes	Clostridium phytofermentans ISDg		13	13
No Yes	Clostridium novyi NT		11	11
No Yes	Clostridium kluyveri DSM 555		11	10
No Yes	Clostridium cellulolyticum H10		5	5
No Yes	Clostridium beijerinckii NCIMB 8052		13	13
No Yes	Clostridium thermocellum ATCC 27405		11	11
No Yes	Clostridium tetani E88		7	7
No Yes	Clostridium perfringens 13		11	10
No Yes	Clostridium difficile 630		3	3
No Yes	Clostridium botulinum A ATCC 3502		11	11
No Yes	Clostridium acetobutylicum ATCC 824		12	11
No Yes	Veillonella parvula DSM 2008		2	2
No Yes	Acidaminococcus fermentans DSM 20731		2	2
No Yes	Caldicellulosiruptor saccharolyticus DSM 8903		4	4
No Yes	Carboxydothermus hydrogenoformans Z-2901		4	4
No Yes	Moorella thermoacetica ATCC 39073		4	3
No Yes	Ammonifex degensii KC4		2	2
No Yes	Thermoanaerobacter pseudethanolicus ATCC 33223		2	2
No Yes	Thermoanaerobacter sp. X514		3	3
No Yes	Thermoanaerobacter tengcongensis MB4		3	3
No Yes	Thermoanaerobacter italicus Ab9		2	2
No Yes	Halothermothrix orenii H 168		4	4
No Yes	Enterococcus faecalis V583		3	3
No Yes	Oenococcus oeni PSU-1		2	2
No Yes	Leuconostoc citreum KM20		1	1
No Yes	Leuconostoc mesenteroides ssp. mesenteroides ATCC 8293		2	2
No Yes	Lactobacillus casei ATCC 334		3	3
No Yes	Lactobacillus crispatus ST1		2	2
No Yes	Lactobacillus rhamnosus GG		4	4
No Yes	Lactobacillus johnsonii NCC 533		3	3
No Yes	Lactobacillus salivarius UCC118		2	2
No Yes	Lactobacillus fermentum IFO 3956		3	3
No Yes	Lactobacillus sakei ssp. sakei 23K		2	2
No Yes	Lactobacillus reuteri DSM 20016		3	3
No Yes	Lactobacillus gasseri ATCC 33323		2	2
No Yes	Lactobacillus plantarum WCFS1		6	6
No Yes	Lactobacillus helveticus DPC 4571		2	2
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842		4	4
No Yes	Lactobacillus brevis ATCC 367		4	4
No Yes	Lactobacillus acidophilus NCFM		2	2
No Yes	Pediococcus pentosaceus ATCC 25745		1	1
No Yes	Lactococcus lactis ssp. lactis Il1403		4	4
No Yes	Streptococcus gallolyticus UCN34		3	3
No Yes	Streptococcus equi ssp. zooepidemicus MGCS10565		3	3
No Yes	Streptococcus dysgalactiae ssp. equisimilis GGS_124		3	3
No Yes	Streptococcus mitis B6		5	5
No Yes	Streptococcus uberis 0140J		2	2
No Yes	Streptococcus pyogenes M1 GAS		2	2
No Yes	Streptococcus pneumoniae TIGR4 (Virulent)		6	6
No Yes	Streptococcus agalactiae NEM316		2	2
No Yes	Streptococcus mutans UA159		2	2
No Yes	Streptococcus thermophilus LMG 18311 (Older strain)		5	5
No Yes	Streptococcus suis 05ZYH33		3	3
No Yes	Streptococcus sanguinis SK36		4	4
No Yes	Streptococcus gordonii Challis subCH1		3	3
No Yes	Exiguobacterium sp. AT1b		7	7
No Yes	Exiguobacterium sibiricum 255-15		9	9
No Yes	Bacillus tusciae DSM 2912		6	6
No Yes	Alicyclobacillus acidocaldarius ssp. acidocaldarius DSM 446		8	8
No Yes	Brevibacillus brevis NBRC 100599		21	21
No Yes	Paenibacillus sp. JDR-2		23	23
No Yes	Listeria welshimeri ser. 6b SLCC5334		4	4
No Yes	Listeria innocua Clip11262		4	4
No Yes	Listeria seeligeri ser. 1/2b SLCC3954		6	6
No Yes	Listeria monocytogenes EGD-e		4	4
No Yes	Lysinibacillus sphaericus C3-41		9	9
No Yes	Oceanobacillus iheyensis HTE831		11	11
No Yes	Anoxybacillus flavithermus WK1		8	8
No Yes	Geobacillus sp. WCH70		9	9
No Yes	Geobacillus thermodenitrificans NG80-2		11	11
No Yes	Geobacillus kaustophilus HTA426		13	13
No Yes	Bacillus subtilis ssp. subtilis 168		11	11
No Yes	Bacillus licheniformis ATCC 14580		9	9
No Yes	Bacillus amyloliquefaciens FZB42		10	10
No Yes	Bacillus halodurans C-125		12	11
No Yes	Bacillus weihenstephanensis KBAB4		20	20
No Yes	Bacillus thuringiensis ser. konkukian 97-27		22	22
No Yes	Bacillus cereus ATCC 14579		18	18
No Yes	Bacillus anthracis Ames Ancestor		22	22
No Yes	Bacillus pseudofirmus OF4		11	11
No Yes	Bacillus clausii KSM-K16		14	14
No Yes	Bacillus pumilus SAFR-032		10	10
No Yes	Bacillus megaterium QM B1551		14	14
No Yes	Macrococcus caseolyticus JCSC5402		3	3
No Yes	Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305		3	3
No Yes	Staphylococcus lugdunensis HKU09-01		3	3
No Yes	Staphylococcus haemolyticus JCSC1435		5	5
No Yes	Staphylococcus epidermidis RP62A		5	5
No Yes	Staphylococcus carnosus ssp. carnosus TM300		3	3
No Yes	Staphylococcus aureus ssp. aureus NCTC 8325		3	3
No Yes	Nautilia profundicola AmH		1	1
No Yes	Sulfurospirillum deleyianum DSM 6946		4	4
No Yes	Arcobacter butzleri RM4018		2	2
No Yes	Campylobacter concisus 13826		1	1
No Yes	Sulfurimonas denitrificans DSM 1251		4	4
No Yes	Wolinella succinogenes DSM 1740		3	3
No Yes	Helicobacter mustelae 12198		1	1
No Yes	Helicobacter pylori 26695		1	1
No Yes	Nitratiruptor sp. SB155-2		4	4
No Yes	Sulfurovum sp. NBC37-1		6	6
No Yes	Bdellovibrio bacteriovorus HD100		9	9
No Yes	Syntrophus aciditrophicus SB		3	3
No Yes	Syntrophobacter fumaroxidans MPOB		12	12
No Yes	Desulfotalea psychrophila LSv54		7	7
No Yes	Desulfatibacillum alkenivorans AK-01		19	18
No Yes	Desulfobacterium autotrophicum HRM2		17	16
No Yes	Desulfococcus oleovorans Hxd3		15	15
No Yes	Desulfohalobium retbaense DSM 5692		6	6
No Yes	Desulfomicrobium baculatum DSM 4028		9	9
No Yes	Desulfovibrio magneticus RS-1		8	8
No Yes	Desulfovibrio vulgaris Hildenborough		3	3
No Yes	Desulfovibrio salexigens DSM 2638		6	6
No Yes	Desulfovibrio desulfuricans ssp. desulfuricans G20		3	3
No Yes	Pelobacter propionicus DSM 2379		5	5
No Yes	Pelobacter carbinolicus DSM 2380		8	8
No Yes	Geobacter uraniireducens Rf4		6	6
No Yes	Geobacter sp. FRC-32		6	6
No Yes	Geobacter lovleyi SZ		7	7
No Yes	Geobacter bemidjiensis Bem		5	5
No Yes	Geobacter sulfurreducens PCA		4	3
No Yes	Geobacter metallireducens GS-15		5	4
No Yes	Haliangium ochraceum DSM 14365		250	243
No Yes	Sorangium cellulosum So ce 56		349	345
No Yes	Anaeromyxobacter sp. Fw109-5		27	27
No Yes	Anaeromyxobacter dehalogenans 2CP-C		26	26
No Yes	Myxococcus xanthus DK 1622		111	111
No Yes	Magnetococcus sp. MC-1		11	11
No Yes	Sideroxydans lithotrophicus ES-1		13	13
No Yes	Aromatoleum aromaticum EbN1		12	12
No Yes	Dechloromonas aromatica RCB		13	12
No Yes	Thauera sp. MZ1T		19	17
No Yes	Laribacter hongkongensis HLHK9		5	5
No Yes	Chromobacterium violaceum ATCC 12472		9	9
No Yes	Neisseria meningitidis Z2491		3	3
No Yes	Neisseria gonorrhoeae FA 1090		4	4
No Yes	Methylotenera mobilis JLW8		9	9
No Yes	Methylovorus sp. SIP3-4		15	14
No Yes	Methylobacillus flagellatus KT		13	13
No Yes	Thiobacillus denitrificans ATCC 25259		12	12
No Yes	Candidatus Accumulibacter phosphatis clade IIA UW-1		24	22
No Yes	Methylibium petroleiphilum PM1		17	17
No Yes	Leptothrix cholodnii SP-6		15	15
No Yes	Ralstonia eutropha JMP134		11	11
No Yes	Cupriavidus taiwanensis		11	10
No Yes	Ralstonia metallidurans CH34		10	10
No Yes	Ralstonia pickettii 12J		10	10
No Yes	Ralstonia solanacearum GMI1000		6	6
No Yes	Polynucleobacter necessarius ssp. asymbioticus QLW-P1DMWA-1		5	5
No Yes	Burkholderia phytofirmans PsJN		15	15
No Yes	Burkholderia phymatum STM815		9	9
No Yes	Burkholderia thailandensis E264		13	12
No Yes	Burkholderia pseudomallei K96243		11	11
No Yes	Burkholderia mallei ATCC 23344		10	10
No Yes	Burkholderia sp. 383		14	14
No Yes	Burkholderia ambifaria AMMD		14	14
No Yes	Burkholderia cenocepacia AU 1054		13	13
No Yes	Burkholderia multivorans ATCC 17616		12	12
No Yes	Burkholderia vietnamiensis G4		10	10
No Yes	Burkholderia xenovorans LB400		14	14
No Yes	Burkholderia glumae BGR1		13	13
No Yes	Verminephrobacter eiseniae EF01-2		9	9
No Yes	Delftia acidovorans SPH-1		12	12
No Yes	Polaromonas sp. JS666		13	12
No Yes	Polaromonas naphthalenivorans CJ2		12	11
No Yes	Variovorax paradoxus S110		15	15
No Yes	Rhodoferax ferrireducens T118		14	14
No Yes	Diaphorobacter sp. TPSY		10	10
No Yes	Acidovorax sp. JS42		12	12
No Yes	Acidovorax citrulli AAC00-1		12	12
No Yes	Comamonas sp. CNB-1		9	9
No Yes	Herminiimonas arsenicoxydans		7	7
No Yes	Janthinobacterium sp. Marseille		10	9
No Yes	Bordetella petrii DSM 12804		13	13
No Yes	Bordetella avium 197N		8	8
No Yes	Bordetella pertussis Tohama I		6	6
No Yes	Bordetella parapertussis 12822		7	7
No Yes	Bordetella bronchiseptica RB50		7	7
No Yes	Nitrosospira multiformis ATCC 25196		10	9
No Yes	Nitrosomonas eutropha C91		5	5
No Yes	Nitrosomonas europaea ATCC 19718		5	5
No Yes	Caulobacter sp. K31		15	14
No Yes	Caulobacter crescentus CB15		9	8
No Yes	Caulobacter segnis ATCC 21756		10	9
No Yes	Phenylobacterium zucineum HLK1		8	8
No Yes	Erythrobacter litoralis HTCC2594		10	10
No Yes	Sphingopyxis alaskensis RB2256		9	9
No Yes	Novosphingobium aromaticivorans DSM 12444		8	8
No Yes	Sphingobium japonicum UT26S		11	11
No Yes	Sphingomonas wittichii RW1		11	11
No Yes	Zymomonas mobilis ssp. mobilis ZM4		6	6
No Yes	Maricaulis maris MCS10		4	4
No Yes	Hirschia baltica ATCC 49814		4	4
No Yes	Hyphomonas neptunium ATCC 15444		17	16
No Yes	Dinoroseobacter shibae DFL 12		9	8
No Yes	Jannaschia sp. CCS1		8	8
No Yes	Ruegeria sp. TM1040		4	4
No Yes	Ruegeria pomeroyi DSS-3		8	8
No Yes	Roseobacter denitrificans OCh 114		7	7
No Yes	Rhodobacter sphaeroides 2.4.1		12	12
No Yes	Rhodobacter capsulatus SB1003		6	6
No Yes	Paracoccus denitrificans PD1222		4	4
No Yes	Magnetospirillum magneticum AMB-1		14	14
No Yes	Rhodospirillum centenum SW		9	9
No Yes	Rhodospirillum rubrum ATCC 11170		10	10
No Yes	Azospirillum sp. B510		7	7
No Yes	Granulibacter bethesdensis CGDNIH1		4	4
No Yes	Gluconacetobacter diazotrophicus PAl 5		4	4
No Yes	Gluconobacter oxydans 621H		5	5
No Yes	Acetobacter pasteurianus IFO 3283-01		6	6
No Yes	alpha proteobacterium IMCC1322		4	4
No Yes	Candidatus Pelagibacter ubique HTCC1062		3	3
No Yes	Neorickettsia sennetsu Miyayama		1	1
No Yes	Neorickettsia risticii Illinois		1	1
No Yes	Ehrlichia chaffeensis Arkansas		1	1
No Yes	Ehrlichia canis Jake		1	1
No Yes	Ehrlichia ruminantium Welgevonden		1	1
No Yes	Anaplasma phagocytophilum HZ		1	1
No Yes	Anaplasma marginale St. Maries		1	1
No Yes	Anaplasma centrale Israel		1	1
No Yes	Orientia tsutsugamushi Boryong		1	1
No Yes	Rickettsia bellii RML369-C		2	2
No Yes	Rickettsia canadensis McKiel		1	1
No Yes	Rickettsia typhi Wilmington		1	1
No Yes	Rickettsia prowazekii Madrid E		1	1
No Yes	Rickettsia peacockii Rustic		1	1
No Yes	Rickettsia felis URRWXCal2		3	3
No Yes	Rickettsia massiliae MTU5		1	1
No Yes	Rickettsia africae ESF-5		1	1
No Yes	Rickettsia akari Hartford		2	2
No Yes	Rickettsia rickettsii Sheila Smith		2	2
No Yes	Rickettsia conorii Malish 7		2	2
No Yes	Wolbachia endosymbiont of Culex_quinquefasciatus Pel		2	2
No Yes	Wolbachia endosymbiont of Drosophila melanogaster (Genus only)		1	1
No Yes	Wolbachia endosymbiont TRS of Brugia malayi		1	1
No Yes	Wolbachia sp. wRi		1	1
No Yes	Xanthobacter autotrophicus Py2		12	12
No Yes	Azorhizobium caulinodans ORS 571		10	10
No Yes	Methylobacterium chloromethanicum CM4		11	11
No Yes	Methylobacterium extorquens PA1		11	11
No Yes	Methylobacterium sp. 4-46		10	10
No Yes	Methylobacterium populi BJ001		10	10
No Yes	Methylobacterium nodulans ORS 2060		11	11
No Yes	Methylobacterium radiotolerans JCM 2831		12	12
No Yes	Ochrobactrum anthropi ATCC 49188		8	8
No Yes	Brucella microti CCM 4915		7	7
No Yes	Brucella canis ATCC 23365		7	7
No Yes	Brucella suis 1330		7	7
No Yes	Brucella melitensis bv. 1 16M		7	7
No Yes	Brucella ovis ATCC 25840		6	6
No Yes	Brucella abortus bv. 1 9-941		7	7
No Yes	Sinorhizobium medicae WSM419		8	8
No Yes	Sinorhizobium meliloti 1021		9	9
No Yes	Rhizobium etli CFN 42		9	9
No Yes	Rhizobium sp. NGR234		5	5
No Yes	Rhizobium leguminosarum bv. viciae 3841		11	11
No Yes	Agrobacterium vitis S4		9	9
No Yes	Agrobacterium radiobacter K84		13	13
No Yes	Agrobacterium tumefaciens C58		7	7
No Yes	Candidatus Liberibacter asiaticus psy62		2	2
No Yes	Chelativorans sp. BNC1		6	6
No Yes	Parvibaculum lavamentivorans DS-1		13	13
No Yes	Mesorhizobium loti MAFF303099		16	16
No Yes	Methylocella silvestris BL2		11	11
No Yes	Beijerinckia indica ssp. indica ATCC 9039		6	6
No Yes	Oligotropha carboxidovorans OM5		5	5
No Yes	Rhodopseudomonas palustris CGA009		11	11
No Yes	Nitrobacter winogradskyi Nb-255		4	4
No Yes	Nitrobacter hamburgensis X14		5	5
No Yes	Bradyrhizobium sp. ORS278		14	14
No Yes	Bradyrhizobium japonicum USDA 110		14	14
No Yes	Bartonella tribocorum CIP 105476		3	3
No Yes	Bartonella henselae Houston-1		2	2
No Yes	Bartonella grahamii as4aup		3	3
No Yes	Bartonella quintana Toulouse		2	2
No Yes	Bartonella bacilliformis KC583		2	2
No Yes	Acidithiobacillus ferrooxidans ATCC 23270		5	5
No Yes	Mannheimia succiniciproducens MBEL55E		3	3
No Yes	Aggregatibacter aphrophilus NJ8700		5	5
No Yes	Aggregatibacter actinomycetemcomitans D11S-1		3	3
No Yes	Haemophilus somnus 129PT		5	5
No Yes	Pasteurella multocida ssp. multocida Pm70		5	4
No Yes	Haemophilus parasuis SH0165		3	3
No Yes	Haemophilus ducreyi 35000HP		3	3
No Yes	Haemophilus influenzae Rd KW20		3	3
No Yes	Actinobacillus succinogenes 130Z		5	4
No Yes	Actinobacillus pleuropneumoniae L20		3	3
No Yes	Tolumonas auensis DSM 9187		13	12
No Yes	Aeromonas salmonicida ssp. salmonicida A449		9	9
No Yes	Aeromonas hydrophila ssp. hydrophila ATCC 7966		9	8
No Yes	Aliivibrio salmonicida LFI1238		14	14
No Yes	Vibrio fischeri ES114		11	11
No Yes	Vibrio parahaemolyticus RIMD 2210633		13	13
No Yes	Vibrio harveyi ATCC BAA-1116		12	12
No Yes	Vibrio sp. Ex25		13	13
No Yes	Vibrio splendidus LGP32		12	12
No Yes	Vibrio vulnificus YJ016 (Good annotation)		9	9
No Yes	Vibrio cholerae O1 biov. El Tor N16961		6	6
No Yes	Photobacterium profundum SS9		14	13
No Yes	Psychromonas ingrahamii 37		10	10
No Yes	Idiomarina loihiensis L2TR		8	7
No Yes	Shewanella piezotolerans WP3		14	13
No Yes	Shewanella loihica PV-4		12	11
No Yes	Shewanella halifaxensis HAW-EB4		12	12
No Yes	Shewanella sediminis HAW-EB3		15	14
No Yes	Shewanella denitrificans OS217		13	13
No Yes	Shewanella pealeana ATCC 700345		13	13
No Yes	Shewanella oneidensis MR-1		14	12
No Yes	Shewanella baltica OS155		10	10
No Yes	Shewanella woodyi ATCC 51908		16	15
No Yes	Shewanella sp. MR-7		10	10
No Yes	Shewanella amazonensis SB2B		10	10
No Yes	Shewanella violacea DSS12		16	15
No Yes	Shewanella frigidimarina NCIMB 400		17	17
No Yes	Shewanella putrefaciens CN-32		9	9
No Yes	Colwellia psychrerythraea 34H		14	14
No Yes	Pseudoalteromonas atlantica T6c		14	14
No Yes	Pseudoalteromonas haloplanktis TAC125		11	11
No Yes	Teredinibacter turnerae T7901		11	10
No Yes	Saccharophagus degradans 2-40		16	15
No Yes	Marinobacter aquaeolei VT8		13	13
No Yes	Alteromonas macleodii Deep ecotype		12	12
No Yes	Hahella chejuensis KCTC 2396		30	27
No Yes	Alcanivorax borkumensis SK2		13	13
No Yes	Marinomonas sp. MWYL1		12	12
No Yes	Chromohalobacter salexigens DSM 3043		13	12
No Yes	Methylococcus capsulatus Bath		6	6
No Yes	Dichelobacter nodosus VCS1703A		2	2
No Yes	Stenotrophomonas maltophilia R551-3		13	13
No Yes	Xylella fastidiosa 9a5c		4	4
No Yes	Xanthomonas axonopodis pv. citri 306		13	13
No Yes	Xanthomonas albilineans		5	5
No Yes	Xanthomonas oryzae pv. oryzae KACC10331		10	10
No Yes	Xanthomonas campestris pv. campestris ATCC 33913 (Completed 2001)		10	10
No Yes	Halothiobacillus neapolitanus c2		5	5
No Yes	Alkalilimnicola ehrlichii MLHE-1		10	10
No Yes	Thioalkalivibrio sp. HL-EbGR7		9	9
No Yes	Halorhodospira halophila SL1		13	13
No Yes	Allochromatium vinosum DSM 180		10	10
No Yes	Nitrosococcus halophilus Nc4		9	9
No Yes	Nitrosococcus oceani ATCC 19707		4	4
No Yes	Coxiella burnetii RSA 493		4	4
No Yes	Legionella longbeachae NSW150		20	20
No Yes	Legionella pneumophila ssp. pneumophila Philadelphia 1		14	14
No Yes	Kangiella koreensis DSM 16069		10	10
No Yes	Candidatus Vesicomyosocius okutanii HA		2	2
No Yes	Candidatus Ruthia magnifica Cm		5	5
No Yes	Cronobacter turicensis z3032		7	7
No Yes	Cronobacter sakazakii ATCC BAA-894		9	9
No Yes	Candidatus Riesia pediculicola USDA		1	1
No Yes	Dickeya zeae Ech1591		7	7
No Yes	Dickeya dadantii Ech703		9	9
No Yes	Candidatus Hamiltonella defensa 5AT		3	3
No Yes	Candidatus Blochmannia floridanus		1	1
No Yes	Pectobacterium wasabiae WPP163		10	10
No Yes	Pectobacterium atrosepticum SCRI1043		9	9
No Yes	Pectobacterium carotovorum ssp. carotovorum PC1		9	9
No Yes	Sodalis glossinidius morsitans		5	5
No Yes	Pantoea ananatis LMG 20103		10	10
No Yes	Wigglesworthia glossinidia		1	1
No Yes	Photorhabdus asymbiotica		6	6
No Yes	Photorhabdus luminescens ssp. laumondii TTO1		5	5
No Yes	Edwardsiella ictaluri 93-146		8	7
No Yes	Edwardsiella tarda EIB202		5	5
No Yes	Yersinia pseudotuberculosis IP 32953		8	8
No Yes	Yersinia pestis CO92		7	7
No Yes	Yersinia enterocolitica ssp. enterocolitica 8081		8	8
No Yes	Xenorhabdus bovienii SS-2004		6	6
No Yes	Shigella sonnei Ss046		10	10
No Yes	Shigella flexneri 2a 2457T		9	9
No Yes	Shigella dysenteriae Sd197		10	10
No Yes	Shigella boydii Sb227		9	9
No Yes	Serratia proteamaculans 568		10	10
No Yes	Salmonella enterica ssp. enterica ser. Typhimurium LT2		8	8
No Yes	Proteus mirabilis HI4320		4	4
No Yes	Klebsiella variicola At-22		8	8
No Yes	Klebsiella pneumoniae ssp. pneumoniae MGH 78578		7	7
No Yes	Escherichia fergusonii ATCC 35469		11	11
No Yes	Escherichia coli K-12 subMG1655		10	10
No Yes	Erwinia tasmaniensis Et1/99		8	8
No Yes	Erwinia pyrifoliae Ep1/96		7	7
No Yes	Erwinia amylovora ATCC 49946		8	8
No Yes	Enterobacter sp. 638		7	7
No Yes	Citrobacter rodentium ICC168		8	8
No Yes	Citrobacter koseri ATCC BAA-895		9	9
No Yes	Azotobacter vinelandii DJ		19	17
No Yes	Pseudomonas entomophila L48		18	17
No Yes	Pseudomonas syringae pv. tomato DC3000		23	21
No Yes	Pseudomonas stutzeri A1501		22	21
No Yes	Pseudomonas putida KT2440		20	18
No Yes	Pseudomonas fluorescens Pf-5		21	19
No Yes	Pseudomonas mendocina ymp		21	19
No Yes	Pseudomonas aeruginosa PAO1		24	22
No Yes	Cellvibrio japonicus Ueda107		11	11
No Yes	Psychrobacter sp. PRwf-1		9	9
No Yes	Psychrobacter arcticus 273-4		7	7
No Yes	Psychrobacter cryohalolentis K5		9	9
No Yes	Acinetobacter sp. ADP1		11	11
No Yes	Acinetobacter baumannii ATCC 17978		8	8
No Yes	Thiomicrospira crunogena XCL-2		8	8
No Yes	Francisella philomiragia ssp. philomiragia ATCC 25017		2	2
No Yes	Francisella tularensis ssp. tularensis SCHU S4		1	1
No Yes	Gloeobacter violaceus PCC 7421		22	22
No Yes	Acaryochloris marina MBIC11017		66	66
No Yes	Prochlorococcus marinus MIT 9313		8	7
No Yes	Nostoc punctiforme PCC 73102		65	65
No Yes	Nostoc sp. PCC 7120		60	60
No Yes	Anabaena variabilis ATCC 29413		63	63
No Yes	Trichodesmium erythraeum IMS101		53	53
No Yes	Thermosynechococcus elongatus BP-1		19	19
No Yes	cyanobacterium UCYN-A		4	4
No Yes	Cyanothece sp. ATCC 51142		29	29
No Yes	Synechocystis sp. PCC 6803		20	19
No Yes	Synechococcus elongatus PCC 6301		10	10
No Yes	Microcystis aeruginosa NIES-843		29	29
No Yes	Nitrosopumilus maritimus SCM1		5	4
No Yes	Nanoarchaeum equitans Kin4-M		3	3
No Yes	Candidatus Korarchaeum cryptofilum OPF8		3	3
No Yes	Methanocella paludicola SANAE		9	9
No Yes	Methanosaeta thermophila PT		4	4
No Yes	Methanococcoides burtonii DSM 6242		5	5
No Yes	Methanosarcina acetivorans C2A		11	11
No Yes	Methanosarcina mazei Go1		6	6
No Yes	Methanosarcina barkeri Fusaro		11	11
No Yes	Methanohalophilus mahii DSM 5219		5	5
No Yes	Methanosphaerula palustris E1-9c		4	4
No Yes	Candidatus Methanoregula boonei 6A8		10	10
No Yes	Methanospirillum hungatei JF-1		13	13
No Yes	Methanocorpusculum labreanum Z		6	6
No Yes	Methanoculleus marisnigri JR1		6	6
No Yes	Methanopyrus kandleri AV19		5	5
No Yes	Ferroglobus placidus DSM 10642		5	5
No Yes	Archaeoglobus profundus DSM 5631		4	4
No Yes	Archaeoglobus fulgidus DSM 4304		4	4
No Yes	Thermococcus onnurineus NA1		4	4
No Yes	Thermococcus kodakarensis KOD1		4	4
No Yes	Thermococcus gammatolerans EJ3		10	10
No Yes	Thermococcus sibiricus MM 739		4	4
No Yes	Pyrococcus horikoshii OT3		4	4
No Yes	Pyrococcus abyssi GE5		4	4
No Yes	Pyrococcus furiosus DSM 3638		5	5
No Yes	Thermoplasma volcanium GSS1		4	4
No Yes	Thermoplasma acidophilum DSM 1728		4	4
No Yes	Picrophilus torridus DSM 9790		5	5
No Yes	Haloquadratum walsbyi DSM 16790		5	5
No Yes	Halomicrobium mukohataei DSM 12286		10	10
No Yes	Halorhabdus utahensis DSM 12940		11	11
No Yes	Haloterrigena turkmenica DSM 5511		7	7
No Yes	Natronomonas pharaonis DSM 2160		8	8
No Yes	Natrialba magadii ATCC 43099		9	9
No Yes	Halorubrum lacusprofundi ATCC 49239		7	7
No Yes	Haloferax volcanii DS2		7	7
No Yes	Halobacterium salinarum R1		7	7
No Yes	Halobacterium sp. NRC-1		7	7
No Yes	Haloarcula marismortui ATCC 43049		10	10
No Yes	Methanocaldococcus sp. FS406-22		4	4
No Yes	Methanocaldococcus fervens AG86		4	4
No Yes	Methanocaldococcus vulcanius M7		8	8
No Yes	Methanocaldococcus jannaschii DSM 2661		3	3
No Yes	Methanococcus aeolicus Nankai-3		4	4
No Yes	Methanococcus maripaludis S2		4	4
No Yes	Methanococcus vannielii SB		4	4
No Yes	Methanothermobacter thermautotrophicus Delta H		4	4
No Yes	Methanosphaera stadtmanae DSM 3091		3	3
No Yes	Methanobrevibacter ruminantium M1		7	7
No Yes	Methanobrevibacter smithii ATCC 35061		3	3
No Yes	uncultured methanogenic archaeon RC-I		9	9
No Yes	Aciduliprofundum boonei T469		2	2
No Yes	Hyperthermus butylicus DSM 5456		6	6
No Yes	Aeropyrum pernix K1		6	6
No Yes	Ignicoccus hospitalis KIN4/I		6	6
No Yes	Staphylothermus marinus F1		6	6
No Yes	Desulfurococcus kamchatkensis 1221n		6	6
No Yes	Metallosphaera sedula DSM 5348		10	10
No Yes	Sulfolobus tokodaii 7		13	13
No Yes	Sulfolobus islandicus Y.N.15.51		11	11
No Yes	Sulfolobus solfataricus P2		9	9
No Yes	Sulfolobus acidocaldarius DSM 639		11	11
No Yes	Thermofilum pendens Hrk 5		5	5
No Yes	Caldivirga maquilingensis IC-167		5	5
No Yes	Pyrobaculum calidifontis JCM 11548		5	5
No Yes	Pyrobaculum arsenaticum DSM 13514		5	5
No Yes	Pyrobaculum aerophilum IM2		6	6
No Yes	Pyrobaculum islandicum DSM 4184		5	5
No Yes	Thermoproteus neutrophilus V24Sta		5	5
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	643	636
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	700	684
No Yes	Cryptococcus neoformans var. grubii H99		111	110
No Yes	Cryptococcus neoformans B-3501A		113	113
No Yes	Ajellomyces dermatitidis ER-3		246	244
No Yes	Histoplasma capsulatum H143		275	273
No Yes	Histoplasma capsulatum H88		307	304
No Yes	Histoplasma capsulatum G186AR		301	300
No Yes	Paracoccidioides brasiliensis Pb01		168	165
No Yes	Paracoccidioides brasiliensis Pb03		174	171
No Yes	Coccidioides posadasii str. Silveira		255	254
No Yes	Coccidioides immitis RMSCC 3703		255	253
No Yes	Coccidioides immitis RMSCC 2394		275	273
No Yes	Coccidioides immitis H538.4		251	249
No Yes	Aspergillus fumigatus A1163		178	176
No Yes	Candida albicans WO-1		112	111
No Yes	Saccharomyces cerevisiae YJM789		136	135
No Yes	Saccharomyces cerevisiae RM11-1a		124	123
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	135	134
No Yes	Schizosaccharomyces pombe 972h-		126	125
No Yes	Batrachochytrium dendrobatidis JAM81		197	197
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	1814	1763
No Yes	Plasmodium falciparum HB3		102	101
No Yes	Plasmodium falciparum Dd2		74	73
No Yes	Ureaplasma parvum ser. 3 ATCC 27815		2	2
No Yes	Mycoplasma agalactiae		3	3
No Yes	Mycoplasma hyopneumoniae 7448		2	2
No Yes	Mycoplasma hyopneumoniae J		2	2
No Yes	Leptospira borgpetersenii ser. Hardjo-bovis JB197		8	8
No Yes	Leptospira interrogans ser. Copenhageni Fiocruz L1-130		10	10
No Yes	Leptospira biflexa ser. Patoc Patoc 1 (Ames)		6	6
No Yes	Treponema pallidum ssp. pallidum SS14		1	1
No Yes	Bifidobacterium longum ssp. infantis ATCC 15697		11	11
No Yes	Bifidobacterium longum		11	11
No Yes	Bifidobacterium animalis ssp. lactis Bl-04		10	10
No Yes	Bifidobacterium animalis ssp. lactis DSM 10140		10	10
No Yes	Frankia sp. EAN1pec		102	100
No Yes	Propionibacterium acnes SK137		9	9
No Yes	Mycobacterium sp. KMS		35	35
No Yes	Mycobacterium sp. JLS		40	40
No Yes	Mycobacterium avium 104		28	28
No Yes	Mycobacterium tuberculosis KZN 1435		19	19
No Yes	Mycobacterium tuberculosis H37Ra		19	19
No Yes	Mycobacterium tuberculosis F11		19	19
No Yes	Mycobacterium tuberculosis CDC1551		19	19
No Yes	Mycobacterium bovis BCG Tokyo 172		19	19
No Yes	Mycobacterium bovis BCG Pasteur 1173P2		20	20
No Yes	Mycobacterium leprae Br4923		7	7
No Yes	Corynebacterium glutamicum R		8	8
No Yes	Corynebacterium glutamicum ATCC 13032 Bielefeld		9	9
No Yes	Tropheryma whipplei TW08/27		5	5
No Yes	Clavibacter michiganensis ssp. sepedonicus		11	11
No Yes	Dehalococcoides sp. GT		1	1
No Yes	Dehalococcoides sp. VS		1	1
No Yes	Dehalococcoides sp. BAV1		1	1
No Yes	Chlorobium phaeobacteroides BS1		2	2
No Yes	Porphyromonas gingivalis ATCC 33277		3	3
No Yes	Bacteroides fragilis YCH46		2	2
No Yes	Salinibacter ruber		7	7
No Yes	Chlamydophila pneumoniae J138		3	3
No Yes	Chlamydophila pneumoniae CWL029		3	3
No Yes	Chlamydophila pneumoniae AR39		3	3
No Yes	Chlamydia trachomatis B/TZ1A828/OT		3	3
No Yes	Chlamydia trachomatis B/Jali20/OT		3	3
No Yes	Chlamydia trachomatis L2b/UCH-1/proctitis		3	3
No Yes	Chlamydia trachomatis 434/Bu		3	3
No Yes	Chlamydia trachomatis A/HAR-13		3	3
No Yes	Thermus thermophilus HB8		6	6
No Yes	Desulfitobacterium hafniense DCB-2		7	6
No Yes	Clostridium kluyveri NBRC 12016		11	10
No Yes	Clostridium perfringens SM101		10	9
No Yes	Clostridium perfringens ATCC 13124		11	10
No Yes	Clostridium difficile R20291		3	3
No Yes	Clostridium difficile CD196		3	3
No Yes	Clostridium botulinum F Langeland		11	11
No Yes	Clostridium botulinum E3 Alaska E43		10	10
No Yes	Clostridium botulinum B1 Okra		13	13
No Yes	Clostridium botulinum Ba4 657		12	12
No Yes	Clostridium botulinum B Eklund 17B		15	15
No Yes	Clostridium botulinum A2 Kyoto		12	12
No Yes	Clostridium botulinum A3 Loch Maree		10	10
No Yes	Clostridium botulinum A Hall		11	11
No Yes	Clostridium botulinum A ATCC 19397		11	11
No Yes	Lactobacillus casei BL23		3	3
No Yes	Lactobacillus rhamnosus Lc 705		4	4
No Yes	Lactobacillus johnsonii FI9785		2	2
No Yes	Lactobacillus reuteri JCM 1112		3	3
No Yes	Lactobacillus plantarum JDM1		7	7
No Yes	Lactobacillus delbrueckii ssp. bulgaricus ATCC BAA-365		5	5
No Yes	Lactococcus lactis ssp. lactis KF147		4	4
No Yes	Lactococcus lactis ssp. cremoris MG1363		5	5
No Yes	Lactococcus lactis ssp. cremoris SK11		6	6
No Yes	Streptococcus equi ssp. equi 4047		3	3
No Yes	Streptococcus equi ssp. zooepidemicus		5	5
No Yes	Streptococcus pyogenes MGAS10750		3	3
No Yes	Streptococcus pyogenes MGAS10270		2	2
No Yes	Streptococcus pyogenes MGAS2096		2	2
No Yes	Streptococcus pyogenes MGAS9429		2	2
No Yes	Streptococcus pyogenes MGAS6180		2	2
No Yes	Streptococcus pyogenes NZ131		2	2
No Yes	Streptococcus pyogenes MGAS8232		2	2
No Yes	Streptococcus pyogenes MGAS10394		2	2
No Yes	Streptococcus pyogenes Manfredo		2	2
No Yes	Streptococcus pyogenes MGAS315		2	2
No Yes	Streptococcus pyogenes SSI-1		2	2
No Yes	Streptococcus pyogenes MGAS5005		2	2
No Yes	Streptococcus pneumoniae ATCC 700669		4	4
No Yes	Streptococcus pneumoniae CGSP14		7	7
No Yes	Streptococcus pneumoniae G54		4	4
No Yes	Streptococcus pneumoniae P1031		5	5
No Yes	Streptococcus pneumoniae JJA		3	3
No Yes	Streptococcus pneumoniae 70585		5	5
No Yes	Streptococcus pneumoniae Hungary19A-6		3	3
No Yes	Streptococcus pneumoniae Taiwan19F-14		3	3
No Yes	Streptococcus pneumoniae D39		4	4
No Yes	Streptococcus pneumoniae R6 (Non-virulent)		4	4
No Yes	Streptococcus agalactiae A909		3	3
No Yes	Streptococcus agalactiae 2603V/R		2	2
No Yes	Streptococcus mutans NN2025		2	2
No Yes	Streptococcus thermophilus LMD-9		4	4
No Yes	Streptococcus thermophilus CNRZ1066 (Younger strain)		5	5
No Yes	Streptococcus suis BM407		3	3
No Yes	Streptococcus suis SC84		3	3
No Yes	Streptococcus suis 98HAH33		3	3
No Yes	Streptococcus suis P1/7		3	3
No Yes	Listeria monocytogenes 08-5578		4	4
No Yes	Listeria monocytogenes 08-5923		4	4
No Yes	Listeria monocytogenes Clip80459		4	4
No Yes	Listeria monocytogenes HCC23		5	5
No Yes	Listeria monocytogenes 4b F2365		4	4
No Yes	Geobacillus sp. Y412MC61		13	13
No Yes	Geobacillus sp. Y412MC10		42	42
No Yes	Bacillus licheniformis ATCC 14580		9	9
No Yes	Bacillus cytotoxicus NVH 391-98		11	11
No Yes	Bacillus thuringiensis Al Hakam		21	21
No Yes	Bacillus cereus 03BB102		21	21
No Yes	Bacillus cereus AH820		23	23
No Yes	Bacillus cereus AH187		18	18
No Yes	Bacillus cereus B4264		21	21
No Yes	Bacillus cereus G9842		21	21
No Yes	Bacillus cereus Q1		20	20
No Yes	Bacillus cereus E33L		27	27
No Yes	Bacillus cereus ATCC 10987		24	24
No Yes	Bacillus anthracis A0248		19	19
No Yes	Bacillus anthracis CDC 684		22	22
No Yes	Bacillus anthracis Sterne		22	22
No Yes	Bacillus anthracis Ames		22	22
No Yes	Bacillus megaterium DSM319		13	13
No Yes	Staphylococcus epidermidis ATCC 12228		3	3
No Yes	Staphylococcus aureus RF122		3	3
No Yes	Staphylococcus aureus ssp. aureus ED98		3	3
No Yes	Staphylococcus aureus ssp. aureus Newman		3	3
No Yes	Staphylococcus aureus ssp. aureus Mu3		4	4
No Yes	Staphylococcus aureus ssp. aureus USA300_TCH1516		3	3
No Yes	Staphylococcus aureus ssp. aureus USA300_FPR3757		3	3
No Yes	Staphylococcus aureus ssp. aureus JH1		4	4
No Yes	Staphylococcus aureus ssp. aureus JH9		4	4
No Yes	Staphylococcus aureus ssp. aureus MSSA476		3	3
No Yes	Staphylococcus aureus ssp. aureus MRSA252		4	4
No Yes	Staphylococcus aureus ssp. aureus MW2		3	3
No Yes	Staphylococcus aureus ssp. aureus N315		4	4
No Yes	Staphylococcus aureus ssp. aureus Mu50		4	4
No Yes	Staphylococcus aureus ssp. aureus COL		2	2
No Yes	Campylobacter jejuni ssp. doylei 269.97		2	2
No Yes	Helicobacter pylori B38		1	1
No Yes	Helicobacter pylori P12		1	1
No Yes	Helicobacter pylori G27		1	1
No Yes	Desulfovibrio vulgaris DP4		3	3
No Yes	Desulfovibrio vulgaris Miyazaki F		3	3
No Yes	Geobacter sp. M21		5	5
No Yes	Anaeromyxobacter sp. K		26	26
No Yes	Anaeromyxobacter dehalogenans 2CP-1		25	25
No Yes	Azoarcus sp. BH72		22	21
No Yes	Neisseria meningitidis alpha14		3	3
No Yes	Neisseria meningitidis 053442		3	3
No Yes	Neisseria meningitidis FAM18		3	3
No Yes	Neisseria meningitidis MC58		3	3
No Yes	Neisseria gonorrhoeae NCCP11945		4	4
No Yes	Ralstonia eutropha H16		14	14
No Yes	Ralstonia pickettii 12D		7	7
No Yes	Polynucleobacter necessarius ssp. necessarius STIR1		5	4
No Yes	Burkholderia sp. CCGE1002		15	15
No Yes	Burkholderia pseudomallei MSHR346		6	6
No Yes	Burkholderia pseudomallei 1106a		10	10
No Yes	Burkholderia pseudomallei 668		10	10
No Yes	Burkholderia pseudomallei 1710b		9	9
No Yes	Burkholderia mallei NCTC 10229		10	10
No Yes	Burkholderia mallei NCTC 10247		10	10
No Yes	Burkholderia mallei SAVP1		10	10
No Yes	Burkholderia ambifaria MC40-6		14	14
No Yes	Burkholderia cenocepacia MC0-3		12	12
No Yes	Burkholderia cenocepacia HI2424		13	13
No Yes	Burkholderia cenocepacia J2315		14	13
No Yes	Burkholderia multivorans ATCC 17616		12	12
No Yes	Caulobacter crescentus NA1000		9	8
No Yes	Zymomonas mobilis ssp. mobilis NCIMB 11163		6	6
No Yes	Rhodobacter sphaeroides KD131		10	10
No Yes	Rhodobacter sphaeroides ATCC 17025		4	4
No Yes	Rhodobacter sphaeroides ATCC 17029		11	11
No Yes	Gluconacetobacter diazotrophicus PAl 5		5	5
No Yes	Ehrlichia ruminantium Gardel		1	1
No Yes	Ehrlichia ruminantium Welgevonden		1	1
No Yes	Anaplasma marginale Florida		1	1
No Yes	Orientia tsutsugamushi Ikeda		4	4
No Yes	Rickettsia bellii OSU 85-389		2	2
No Yes	Rickettsia rickettsii Iowa		1	1
No Yes	Methylobacterium extorquens DM4		11	11
No Yes	Methylobacterium extorquens AM1		10	10
No Yes	Brucella suis ATCC 23445		6	6
No Yes	Brucella melitensis ATCC 23457		6	6
No Yes	Brucella abortus S19		7	7
No Yes	Brucella melitensis biov. Abortus 2308		7	7
No Yes	Rhizobium etli CIAT 652		9	9
No Yes	Rhizobium leguminosarum bv. trifolii WSM2304		9	9
No Yes	Rhizobium leguminosarum bv. trifolii WSM1325		11	11
No Yes	Rhodopseudomonas palustris TIE-1		14	13
No Yes	Rhodopseudomonas palustris HaA2		9	9
No Yes	Rhodopseudomonas palustris BisB5		10	9
No Yes	Rhodopseudomonas palustris BisB18		11	10
No Yes	Rhodopseudomonas palustris BisA53		10	10
No Yes	Bradyrhizobium sp. BTAi1		16	16
No Yes	Acidithiobacillus ferrooxidans ATCC 53993		5	5
No Yes	Haemophilus somnus 2336		4	4
No Yes	Haemophilus influenzae PittGG		4	4
No Yes	Haemophilus influenzae PittEE		3	3
No Yes	Haemophilus influenzae 86-028NP		3	3
No Yes	Actinobacillus pleuropneumoniae ser. 3 JL03		3	3
No Yes	Actinobacillus pleuropneumoniae ser. 7 AP76		3	3
No Yes	Vibrio fischeri MJ11		13	13
No Yes	Vibrio vulnificus CMCP6 (Poor annotation)		10	10
No Yes	Vibrio cholerae M66-2		6	6
No Yes	Vibrio cholerae O395		6	6
No Yes	Vibrio cholerae MJ-1236		9	9
No Yes	Shewanella sp. W3-18-1		11	11
No Yes	Shewanella sp. ANA-3		11	11
No Yes	Shewanella baltica OS223		9	9
No Yes	Shewanella baltica OS185		9	9
No Yes	Shewanella baltica OS195		9	9
No Yes	Shewanella sp. MR-4		11	11
No Yes	Stenotrophomonas maltophilia K279a		12	12
No Yes	Xylella fastidiosa M23		4	4
No Yes	Xylella fastidiosa M12		4	4
No Yes	Xylella fastidiosa Temecula1		4	4
No Yes	Xanthomonas campestris pv. vesicatoria 85-10 (Completed 2005)		17	17
No Yes	Xanthomonas oryzae pv. oryzae PXO99A		10	10
No Yes	Xanthomonas oryzae pv. oryzae MAFF 311018		10	10
No Yes	Xanthomonas campestris pv. campestris B100		11	11
No Yes	Xanthomonas campestris pv. campestris 8004 (Completed 2005)		10	10
No Yes	Thioalkalivibrio sp. K90mix		12	12
No Yes	Coxiella burnetii CbuK_Q154		6	6
No Yes	Coxiella burnetii CbuG_Q212		5	5
No Yes	Coxiella burnetii Dugway 5J108-111		7	7
No Yes	Coxiella burnetii RSA 331		7	7
No Yes	Legionella pneumophila Corby		18	18
No Yes	Legionella pneumophila Paris		17	17
No Yes	Legionella pneumophila Lens		16	16
No Yes	Dickeya dadantii Ech586		7	7
No Yes	Candidatus Blochmannia pennsylvanicus BPEN		1	1
No Yes	Yersinia pseudotuberculosis PB1/+		8	8
No Yes	Yersinia pseudotuberculosis YPIII		8	8
No Yes	Yersinia pseudotuberculosis IP 31758		8	8
No Yes	Yersinia pestis Z176003		7	7
No Yes	Yersinia pestis Pestoides F		8	8
No Yes	Yersinia pestis Nepal516		7	7
No Yes	Yersinia pestis Antiqua		7	7
No Yes	Yersinia pestis Angola		7	7
No Yes	Yersinia pestis biov. Microtus 91001		7	7
No Yes	Yersinia pestis KIM		7	7
No Yes	Shigella flexneri 5 8401		10	10
No Yes	Shigella flexneri 2a 301		10	10
No Yes	Shigella boydii CDC 3083-94		9	9
No Yes	Salmonella enterica ssp. arizonae ser. 62:z4,z23:--		8	8
No Yes	Salmonella enterica ssp. enterica ser. Schwarzengrund CVM19633		8	8
No Yes	Salmonella enterica ssp. enterica ser. Enteritidis P125109		8	8
No Yes	Salmonella enterica ssp. enterica ser. Choleraesuis str. SC-B67		8	8
No Yes	Salmonella enterica ssp. enterica ser. Newport SL254		8	8
No Yes	Salmonella enterica ssp. enterica ser. Dublin CT_02021853		8	8
No Yes	Salmonella enterica ssp. enterica ser. Typhi CT18		10	10
No Yes	Salmonella enterica ssp. enterica ser. Typhi Ty2		10	10
No Yes	Salmonella enterica ssp. enterica ser. Agona SL483		8	8
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi C RKS4594		8	8
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi B SPB7		8	8
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A AKU_12601		8	8
No Yes	Salmonella enterica ssp. enterica ser. Paratyphi A ATCC 9150		8	8
No Yes	Salmonella enterica ssp. enterica ser. Heidelberg SL476		10	10
No Yes	Salmonella enterica ssp. enterica ser. Gallinarum 287/91		8	8
No Yes	Klebsiella pneumoniae 342		9	9
No Yes	Klebsiella pneumoniae NTUH-K2044		9	8
No Yes	Escherichia coli ED1a		10	10
No Yes	Escherichia coli IAI39		10	10
No Yes	Escherichia coli UMN026		12	12
No Yes	Escherichia coli 55989		11	11
No Yes	Escherichia coli S88		11	11
No Yes	Escherichia coli IAI1		10	10
No Yes	Escherichia coli BL21		10	10
No Yes	Escherichia coli ATCC 8739		10	10
No Yes	Escherichia coli BL21(DE3)		10	10
No Yes	Escherichia coli SMS-3-5		10	10
No Yes	Escherichia coli SE11		10	10
No Yes	Escherichia coli APEC O1		10	10
No Yes	Escherichia coli O103:H2 12009		12	12
No Yes	Escherichia coli UTI89		10	10
No Yes	Escherichia coli 536		10	10
No Yes	Escherichia coli HS		11	11
No Yes	Escherichia coli E24377A		12	12
No Yes	Escherichia coli O55:H7 CB9615		10	10
No Yes	Escherichia coli O26:H11 11368		9	9
No Yes	Escherichia coli CFT073		10	10
No Yes	Escherichia coli O111:H- 11128		12	12
No Yes	Escherichia coli O127:H6 E2348/69		10	10
No Yes	Escherichia coli O157:H7 EDL933		11	11
No Yes	Escherichia coli O157:H7 TW14359		12	12
No Yes	Escherichia coli O157:H7 EC4115		13	13
No Yes	Escherichia coli O157:H7 Sakai		10	10
No Yes	Escherichia coli BW2952		11	11
No Yes	Escherichia coli K-12 subW3110		10	10
No Yes	Escherichia coli K-12 subDH10B		10	10
No Yes	Escherichia coli B REL606		10	10
No Yes	Erwinia amylovora CFBP1430		8	8
No Yes	Pseudomonas syringae pv. phaseolicola 1448A		18	16
No Yes	Pseudomonas syringae pv. syringae B728a		24	22
No Yes	Pseudomonas putida W619		19	17
No Yes	Pseudomonas putida F1		21	19
No Yes	Pseudomonas putida GB-1		21	19
No Yes	Pseudomonas fluorescens SBW25		19	18
No Yes	Pseudomonas fluorescens Pf0-1		21	20
No Yes	Pseudomonas aeruginosa LESB58		27	25
No Yes	Pseudomonas aeruginosa PA7		28	26
No Yes	Pseudomonas aeruginosa UCBPP-PA14		26	24
No Yes	Acinetobacter baumannii AB307-0294		8	8
No Yes	Acinetobacter baumannii AYE		11	11
No Yes	Acinetobacter baumannii SDF		7	7
No Yes	Acinetobacter baumannii AB0057		9	9
No Yes	Acinetobacter baumannii ACICU		9	9
No Yes	Francisella novicida U112		1	1
No Yes	Francisella tularensis ssp. mediasiatica FSC147		1	1
No Yes	Francisella tularensis ssp. holarctica FTNF002-00		1	1
No Yes	Francisella tularensis ssp. holarctica OSU18		1	1
No Yes	Francisella tularensis ssp. holarctica		1	1
No Yes	Francisella tularensis ssp. tularensis WY96-3418		1	1
No Yes	Francisella tularensis ssp. tularensis FSC198		1	1
No Yes	Prochlorococcus marinus NATL1A		6	5
No Yes	Prochlorococcus marinus MIT 9301		5	4
No Yes	Prochlorococcus marinus MIT 9515		4	4
No Yes	Prochlorococcus marinus AS9601		5	4
No Yes	Prochlorococcus marinus ssp. marinus CCMP1375		6	6
No Yes	Prochlorococcus marinus ssp. pastoris CCMP1986		5	5
No Yes	Prochlorococcus marinus MIT 9215		4	4
No Yes	Prochlorococcus marinus MIT 9211		5	5
No Yes	Prochlorococcus marinus MIT 9312		5	5
No Yes	Prochlorococcus marinus MIT 9303		9	8
No Yes	Prochlorococcus marinus NATL2A		6	5
No Yes	Cyanothece sp. PCC 8802		22	22
No Yes	Cyanothece sp. PCC 7425		37	37
No Yes	Cyanothece sp. PCC 7424		36	36
No Yes	Cyanothece sp. PCC 8801		25	25
No Yes	Synechococcus sp. JA-2-3Ba(2-13) (Poor annotation)		17	17
No Yes	Synechococcus sp. JA-3-3Ab (Poor annotation)		15	15
No Yes	Synechococcus sp. CC9902 (Poor annotation)		8	6
No Yes	Synechococcus sp. RCC307		7	7
No Yes	Synechococcus sp. CC9605 (Poor annotation)		10	8
No Yes	Synechococcus sp. WH 8102 (Good annotation)		7	5
No Yes	Synechococcus sp. CC9311		10	9
No Yes	Synechococcus sp. WH 7803		8	8
No Yes	Synechococcus sp. PCC 7002		20	20
No Yes	Synechococcus elongatus PCC 7942		10	10
No Yes	Methanococcus maripaludis C6		5	5
No Yes	Methanococcus maripaludis C7		6	6
No Yes	Methanococcus maripaludis C5		5	5
No Yes	Sulfolobus islandicus Y.G.57.14		11	11
No Yes	Sulfolobus islandicus L.S.2.15		10	10
No Yes	Sulfolobus islandicus M.16.27		10	10
No Yes	Sulfolobus islandicus M.14.25		10	10
No Yes	Sulfolobus islandicus M.16.4		11	11
No Yes	Sulfolobus islandicus L.D.8.5		10	10
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	532	519
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		195	195
No Yes	Lotus japonicus (Early assembly)		140	139
No Yes	Prunus persica (Early draft)	Peach	1196	1192
No Yes	Manihot esculenta (Early draft)	Cassava	1628	1619
No Yes	Ricinus communis (Early assembly)	Castor bean	1010	994
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	1178	1166
No Yes	Phoenix dactylifera (Early draft)	Date palm	775	768
No Yes	Trypanosoma vivax (Parial)		194	193
No Yes	Trypanosoma congolense (Partial)		240	238
No Yes	Toxoplasma gondii GT1 (Early assembly)		170	170
No Yes	Toxoplasma gondii VEG (Early assembly)		168	168
No Yes	Toxoplasma gondii RH (Archived)		181	180
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	539	526
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	523	511
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	484	473
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	510	500
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	531	519
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	521	510
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	476	465
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	491	480
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	395	386
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	575	560
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	564	551
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	459	448
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	497	484
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	559	548
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	431	419
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	491	478
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	450	440
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	427	417
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	530	517
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	338	331
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	509	496
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	513	502
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	429	418
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	522	510
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	488	477
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	510	497
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	381	374
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	423	415
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	491	482
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	463	456
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	481	474
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	435	425
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	490	479
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	515	506
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	473	466
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	520	510
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	626	618
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	464	453
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	449	441
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	642	631
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	959	944
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	649	634
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	622	608
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	788	765
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	666	651
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		271	268
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		298	296
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	227	226
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	643	636
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	295	290
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	316	309
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	265	257
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	493	485
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	495	487
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	1077	1076
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	2086	2043
No Yes	NCBI viral sequences (Viral)		308	308
No Yes	PDB chains (SCOP 1.73) (PDB)		194	194
No Yes	TargetDB (Targets)		2630	2601
No Yes	UniProt 15.0 (UniProt)		69605	68671
No Yes	UniProt 15.0 viral sequences (Viral)		574	574