C2H2 and C2HC zinc fingers superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		301887	301887
No Yes	Homo sapiens 49_36k (all transcripts)	Human	6285	1324
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	4092	895
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	2074	492
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	3014	659
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	5576	1126
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	5604	1216
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	1537	378
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	1719	434
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	1859	443
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	2711	714
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	4774	1087
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	1362	376
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	1118	318
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	1158	351
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	1382	369
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	1189	331
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	1284	338
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	1883	419
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	2422	571
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	1179	294
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	2088	499
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	1163	378
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	1590	401
No Yes	Equus caballus 49_2 (all transcripts)	Horse	3414	646
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	1673	422
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	1756	445
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	924	269
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	942	286
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	1616	416
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	2142	494
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	1625	430
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	2001	502
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	998	289
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	25396	2841
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	1302	399
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	3245	546
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	2168	583
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	669	250
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	1069	310
No Yes	Xenopus laevis	African clawed frog	1367	502
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	2832	615
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	1856	627
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	1163	373
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	1385	392
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	899	381
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	3085	872
No Yes	Branchiostoma floridae 1.0	Florida lancelet	8970	1637
No Yes	Ciona savignyi 49_2f (all transcripts)		1334	202
No Yes	Ciona intestinalis 49_2i (all transcripts)		537	167
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	597	231
No Yes	Helobdella robusta		408	236
No Yes	Capitella sp. I		822	308
No Yes	Bombyx mori	Domestic silkworm	455	245
No Yes	Nasonia vitripennis	Jewel wasp	266	101
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	898	346
No Yes	Drosophila grimshawi 1.3		533	238
No Yes	Drosophila willistoni 1.3		481	219
No Yes	Drosophila pseudoobscura 2.3		537	238
No Yes	Drosophila persimilis 1.3		526	233
No Yes	Drosophila yakuba 1.3		542	237
No Yes	Drosophila simulans 1.3		464	213
No Yes	Drosophila sechellia 1.3		543	249
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	745	311
No Yes	Drosophila erecta 1.3		537	235
No Yes	Drosophila ananassae 1.3		504	219
No Yes	Drosophila virilis 1.2		579	247
No Yes	Drosophila mojavensis 1.3		522	225
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	1451	537
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	1303	573
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	639	245
No Yes	Tribolium castaneum 3.0	Red flour beetle	748	219
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	436	165
No Yes	Acyrthosiphon pisum	Pea aphid	846	182
No Yes	Daphnia pulex	Common water flea	343	167
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	545	262
No Yes	Lottia gigantea		1162	320
No Yes	Pristionchus pacificus		189	133
No Yes	Meloidogyne incognita	Southern root-knot nematode	148	125
No Yes	Meloidogyne hapla		85	61
No Yes	Brugia malayi	Agent of lymphatic filariasis	273	123
No Yes	Caenorhabditis japonica		127	89
No Yes	Caenorhabditis brenneri		122	81
No Yes	Caenorhabditis remanei		200	147
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	188	127
No Yes	Caenorhabditis briggsae 2		158	107
No Yes	Schistosoma mansoni		197	121
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	734	217
No Yes	Hydra magnipapillata		197	109
No Yes	Trichoplax adhaerens		78	48
No Yes	Proterospongia sp. ATCC 50818		67	41
No Yes	Monosiga brevicollis		39	33
No Yes	Capsaspora owczarzaki ATCC 30864		34	26
No Yes	Malassezia globosa CBS 7966		24	20
No Yes	Ustilago maydis		39	31
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		60	56
No Yes	Melampsora laricis-populina		52	49
No Yes	Sporobolomyces roseus IAM 13481		16	13
No Yes	Serpula lacrymans var. lacrymans S7.9		30	24
No Yes	Coprinopsis cinerea okayama7 130		47	38
No Yes	Pleurotus ostreatus	Oyster mushroom	52	46
No Yes	Laccaria bicolor S238N-H82		51	44
No Yes	Agaricus bisporus var. bisporus		37	28
No Yes	Schizophyllum commune		62	59
No Yes	Heterobasidion annosum		45	38
No Yes	Phanerochaete chrysosporium RP-78 2.1		36	29
No Yes	Postia placenta		53	42
No Yes	Tremella mesenterica		34	28
No Yes	Cryptococcus neoformans JEC21		23	18
No Yes	Magnaporthe grisea 70-15		42	35
No Yes	Podospora anserina		44	38
No Yes	Sporotrichum thermophile ATCC 42464		38	34
No Yes	Thielavia terrestris NRRL 8126		41	38
No Yes	Chaetomium globosum CBS 148.51		33	32
No Yes	Neurospora tetrasperma		49	42
No Yes	Neurospora discreta FGSC 8579		49	41
No Yes	Neurospora crassa OR74A		45	40
No Yes	Cryphonectria parasitica	Chestnut blight fungus	44	39
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		57	49
No Yes	Nectria haematococca mpVI		61	53
No Yes	Fusarium verticillioides 7600		49	45
No Yes	Fusarium graminearum		51	44
No Yes	Trichoderma atroviride		49	43
No Yes	Trichoderma reesei 1.2		44	37
No Yes	Trichoderma virens Gv29-8		55	44
No Yes	Verticillium dahliae VdLs.17		40	35
No Yes	Verticillium albo-atrum VaMs.102		37	33
No Yes	Botrytis cinerea B05.10		35	31
No Yes	Sclerotinia sclerotiorum		46	40
No Yes	Alternaria brassicicola		35	33
No Yes	Pyrenophora tritici-repentis		48	44
No Yes	Cochliobolus heterostrophus		42	36
No Yes	Stagonospora nodorum		48	43
No Yes	Mycosphaerella fijiensis CIRAD86		42	39
No Yes	Mycosphaerella graminicola IPO323		44	40
No Yes	Ajellomyces dermatitidis SLH14081		40	35
No Yes	Histoplasma capsulatum class NAmI strain WU24		36	32
No Yes	Microsporum gypseum		35	31
No Yes	Arthroderma benhamiae CBS 112371		30	26
No Yes	Microsporum canis CBS 113480		31	25
No Yes	Trichophyton equinum CBS 127.97		42	34
No Yes	Trichophyton verrucosum HKI 0517		28	24
No Yes	Trichophyton tonsurans CBS 112818		42	34
No Yes	Trichophyton rubrum CBS 118892		36	30
No Yes	Paracoccidioides brasiliensis Pb18		37	33
No Yes	Coccidioides posadasii RMSCC 3488		46	38
No Yes	Coccidioides immitis RS		44	37
No Yes	Uncinocarpus reesii 1704		39	36
No Yes	Aspergillus fumigatus Af293		56	47
No Yes	Neosartorya fischeri NRRL 181		60	51
No Yes	Penicillium chrysogenum Wisconsin 54-1255		77	69
No Yes	Penicillium marneffei ATCC 18224		56	49
No Yes	Aspergillus carbonarius ITEM 5010		56	48
No Yes	Aspergillus terreus NIH2624		51	45
No Yes	Aspergillus oryzae RIB40		31	27
No Yes	Aspergillus niger ATCC 1015		40	34
No Yes	Aspergillus flavus NRRL3357		46	41
No Yes	Aspergillus clavatus NRRL 1		54	48
No Yes	Aspergillus nidulans FGSC A4		57	48
No Yes	Tuber melanosporum Vittad	Perigord truffle	46	38
No Yes	Candida dubliniensis CD36		40	33
No Yes	Candida tropicalis MYA-3404		42	32
No Yes	Candida parapsilosis		41	35
No Yes	Candida albicans SC5314		41	33
No Yes	Yarrowia lipolytica CLIB122		38	33
No Yes	Candida lusitaniae ATCC 42720		36	29
No Yes	Vanderwaltozyma polyspora DSM 70294		43	39
No Yes	Candida glabrata CBS138		46	42
No Yes	Kluyveromyces thermotolerans CBS 6340		31	28
No Yes	Lachancea kluyveri		42	35
No Yes	Kluyveromyces waltii		37	32
No Yes	Lodderomyces elongisporus NRRL YB-4239		38	32
No Yes	Ashbya gossypii ATCC 10895		37	33
No Yes	Debaromyces hansenii		38	33
No Yes	Zygosaccharomyces rouxii		29	25
No Yes	Saccharomyces mikatae MIT		42	37
No Yes	Saccharomyces paradoxus MIT		44	40
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	43	40
No Yes	Saccharomyces bayanus MIT		39	35
No Yes	Candida guilliermondii ATCC 6260		33	32
No Yes	Pichia stipitis CBS 6054		40	33
No Yes	Pichia pastoris GS115		37	32
No Yes	Kluyveromyces lactis		39	32
No Yes	Schizosaccharomyces octosporus yFS286		28	22
No Yes	Schizosaccharomyces japonicus yFS275		27	19
No Yes	Schizosaccharomyces pombe	Fission yeast	22	19
No Yes	Allomyces macrogynus ATCC 38327		98	76
No Yes	Rhizopus oryzae RA 99-880		106	91
No Yes	Phycomyces blakesleeanus		106	90
No Yes	Mucor circinelloides		98	87
No Yes	Encephalitozoon intestinalis		7	7
No Yes	Encephalitozoon cuniculi		7	7
No Yes	Spizellomyces punctatus DAOM BR117		56	49
No Yes	Batrachochytrium dendrobatidis JEL423		43	37
No Yes	Dictyostelium discoideum		18	13
No Yes	Dictyostelium purpureum		15	12
No Yes	Entamoeba dispar		13	11
No Yes	Entamoeba invadens		14	12
No Yes	Entamoeba histolytica 1		21	14
No Yes	Arabidopsis lyrata	Lyrate rockcress	81	75
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	84	74
No Yes	Carica papaya	Papaya	47	43
No Yes	Medicago truncatula	Barrel medic	58	54
No Yes	Glycine max	Soybean	148	139
No Yes	Cucumis sativus	Cucumber	82	77
No Yes	Populus trichocarpa 1.1	Black cottonwood	92	85
No Yes	Vitis vinifera	Wine grape	59	53
No Yes	Brachypodium distachyon		79	67
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	207	195
No Yes	Zea mays subsp. mays	Maize	130	113
No Yes	Sorghum bicolor	Sorghum	92	82
No Yes	Selaginella moellendorffii		46	38
No Yes	Physcomitrella patens subsp. patens		23	21
No Yes	Coccomyxa sp. C-169		9	8
No Yes	Chlorella sp. NC64A		6	6
No Yes	Chlorella vulgaris		10	9
No Yes	Volvox carteri f. nagariensis		8	7
No Yes	Chlamydomonas reinhardtii 4.0		7	7
No Yes	Ostreococcus sp. RCC809		7	5
No Yes	Ostreococcus lucimarinus CCE9901		7	6
No Yes	Ostreococcus tauri		6	5
No Yes	Micromonas sp. RCC299		15	11
No Yes	Micromonas pusilla CCMP1545		12	9
No Yes	Cyanidioschyzon merolae		11	7
No Yes	Giardia lamblia		4	4
No Yes	Trypanosoma cruzi strain CL Brener		21	18
No Yes	Trypanosoma brucei		7	6
No Yes	Leishmania mexicana		7	6
No Yes	Leishmania major strain Friedlin		7	6
No Yes	Leishmania infantum JPCM5		7	6
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		8	7
No Yes	Aureococcus anophagefferens		3	3
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	52	34
No Yes	Phytophthora sojae 1.1		53	33
No Yes	Phytophthora infestans T30-4		49	32
No Yes	Phytophthora capsici		49	32
No Yes	Phaeodactylum tricornutum		6	6
No Yes	Fragilariopsis cylindrus		18	17
No Yes	Thalassiosira pseudonana		9	8
No Yes	Paramecium tetraurelia		29	21
No Yes	Tetrahymena thermophila SB210 1		22	13
No Yes	Babesia bovis T2Bo		7	7
No Yes	Theileria parva		3	3
No Yes	Theileria annulata		5	5
No Yes	Plasmodium falciparum 3D7		6	5
No Yes	Plasmodium vivax SaI-1		7	6
No Yes	Plasmodium knowlesi strain H		7	6
No Yes	Plasmodium yoelii ssp. yoelii 1		7	6
No Yes	Plasmodium chabaudi		5	5
No Yes	Plasmodium berghei ANKA		6	6
No Yes	Cryptosporidium hominis		5	4
No Yes	Cryptosporidium muris		10	8
No Yes	Cryptosporidium parvum Iowa II		8	7
No Yes	Neospora caninum Nc-Liverpool		13	11
No Yes	Neospora caninum		10	9
No Yes	Toxoplasma gondii ME49		14	11
No Yes	Naegleria gruberi		7	6
No Yes	Trichomonas vaginalis		13	9
No Yes	Emiliania huxleyi CCMP1516		32	28
No Yes	Thermobaculum terrenum ATCC BAA-798		1	1
No Yes	Xenorhabdus bovienii SS-2004		1	1
No Yes	Sulfolobus solfataricus P2		1	1
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	757	314
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	167	115
No Yes	Cryptococcus neoformans var. grubii H99		27	22
No Yes	Cryptococcus neoformans B-3501A		34	27
No Yes	Ajellomyces dermatitidis ER-3		38	34
No Yes	Histoplasma capsulatum H143		36	32
No Yes	Histoplasma capsulatum H88		42	36
No Yes	Histoplasma capsulatum G186AR		39	33
No Yes	Paracoccidioides brasiliensis Pb01		37	32
No Yes	Paracoccidioides brasiliensis Pb03		31	27
No Yes	Coccidioides posadasii str. Silveira		45	38
No Yes	Coccidioides immitis RMSCC 3703		33	28
No Yes	Coccidioides immitis RMSCC 2394		43	36
No Yes	Coccidioides immitis H538.4		30	27
No Yes	Aspergillus fumigatus A1163		59	50
No Yes	Candida albicans WO-1		38	31
No Yes	Saccharomyces cerevisiae YJM789		45	40
No Yes	Saccharomyces cerevisiae RM11-1a		42	39
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	43	40
No Yes	Schizosaccharomyces pombe 972h-		22	19
No Yes	Batrachochytrium dendrobatidis JAM81		43	37
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	120	112
No Yes	Plasmodium falciparum HB3		6	5
No Yes	Plasmodium falciparum Dd2		3	2
No Yes	Sulfolobus islandicus M.14.25		1	1
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	2144	498
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		8	8
No Yes	Lotus japonicus (Early assembly)		20	20
No Yes	Prunus persica (Early draft)	Peach	90	83
No Yes	Manihot esculenta (Early draft)	Cassava	95	88
No Yes	Ricinus communis (Early assembly)	Castor bean	54	50
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	75	70
No Yes	Phoenix dactylifera (Early draft)	Date palm	17	15
No Yes	Trypanosoma vivax (Parial)		24	23
No Yes	Trypanosoma congolense (Partial)		19	17
No Yes	Toxoplasma gondii GT1 (Early assembly)		10	9
No Yes	Toxoplasma gondii VEG (Early assembly)		11	10
No Yes	Toxoplasma gondii RH (Archived)		16	12
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	3688	741
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	3230	666
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	2064	490
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	2667	583
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	3269	672
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	3150	638
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	1537	378
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	1719	434
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	1859	443
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	1949	490
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	2949	635
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	1362	376
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	1118	318
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	1026	321
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	1382	369
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	1189	331
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	1284	338
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	1570	377
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	1956	462
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	1179	294
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	2088	499
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	1023	319
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	1590	401
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	2676	545
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	1673	422
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	1756	445
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	924	269
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	942	286
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	1616	416
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	2142	494
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	1625	430
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	2001	502
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	993	288
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	5726	723
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	746	232
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	3245	546
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	2107	561
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	547	208
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	756	229
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	1356	344
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	1113	385
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	1016	317
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	1153	338
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	899	381
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	949	319
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		448	104
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		288	109
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	294	123
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	757	314
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	517	222
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	1390	514
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	624	237
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	135	92
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	134	91
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	75	67
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	100	92
No Yes	NCBI viral sequences (Viral)		8	8
No Yes	PDB chains (SCOP 1.73) (PDB)		80	61
No Yes	TargetDB (Targets)		581	335
No Yes	UniProt 15.0 (UniProt)		53033	19851
No Yes	UniProt 15.0 viral sequences (Viral)		8	8