RING/U-box superfamily domain assignments
in
Saccharomyces cerevisiae SGD

Select to display	Genome		Domains	Proteins
No Yes	ALL		86611	86611
No Yes	Homo sapiens 49_36k (all transcripts)	Human	717	650
No Yes	Pan troglodytes 49_21h (all transcripts)	Chimpanzee	495	447
No Yes	Gorilla gorilla 52_1 (all transcripts)	Western Gorilla	215	205
No Yes	Pongo pygmaeus 49_1 (all transcripts)	Bornean orangutan	330	305
No Yes	Macaca mulatta 49_10h (all transcripts)	Rhesus monkey	514	472
No Yes	Callithrix jacchus 56_3 (all transcripts)	White-tufted-ear marmoset	596	546
No Yes	Otolemur garnettii 49_1c (all transcripts)	Small-eared galago	186	176
No Yes	Microcebus murinus 49_1 (all transcripts)	Gray mouse lemur	201	185
No Yes	Tarsius syrichta 51_1 (all transcripts)	Philippine tarsier	165	150
No Yes	Rattus norvegicus 49_34s (all transcripts)	Norway rat	366	341
No Yes	Mus musculus 49_37b (all transcripts)	House mouse	540	504
No Yes	Spermophilus tridecemlineatus 49_1e (all transcripts)	Thirteen-lined ground squirrel	164	154
No Yes	Dipodomys ordii 51_1 (all transcripts)	Ord's kangaroo rat	218	205
No Yes	Cavia porcellus 51_3 (all transcripts)	Domestic guinea pig	279	254
No Yes	Oryctolagus cuniculus 49_1f (all transcripts)	Rabbit	183	169
No Yes	Ochotona princeps 49_1 (all transcripts)	American pika	215	197
No Yes	Tupaia belangeri 49_1d (all transcripts)	Northern tree shrew	177	169
No Yes	Sus scrofa 56_9 (all transcripts)	Pig	257	231
No Yes	Bos taurus 49_3f (all transcripts)	Cattle	358	332
No Yes	Vicugna pacos 51_1 (all transcripts)	Alpaca	161	147
No Yes	Tursiops truncatus 51_1 (all transcripts)	Bottlenosed dolphin	254	233
No Yes	Canis familiaris 49_2g (all transcripts)	Dog	349	319
No Yes	Felis catus 49_1c (all transcripts)	Domestic cat	185	166
No Yes	Equus caballus 49_2 (all transcripts)	Horse	295	266
No Yes	Myotis lucifugus 49_1e (all transcripts)	Little brown bat	195	182
No Yes	Pteropus vampyrus 51_1 (all transcripts)	Large flying fox	261	233
No Yes	Sorex araneus 49_1c (all transcripts)	European shrew	181	165
No Yes	Erinaceus europaeus 49_1c (all transcripts)	Western European hedgehog	189	179
No Yes	Procavia capensis 51_1 (all transcripts)	Cape rock hyrax	213	194
No Yes	Loxodonta africana 49_1d (all transcripts)	African savanna elephant	185	175
No Yes	Echinops telfairi 49_1e (all transcripts)	Small Madagascar hedgehog	197	181
No Yes	Dasypus novemcinctus 49_1f (all transcripts)	Nine-banded armadillo	160	151
No Yes	Macropus eugenii 55_1 (all transcripts)	Tammar wallaby	194	180
No Yes	Monodelphis domestica 49_5d (all transcripts)	Gray short-tailed opossum	602	572
No Yes	Ornithorhynchus anatinus 49_1f (all transcripts)	Platypus	305	285
No Yes	Anolis carolinensis 55_1a (all transcripts)	Green anole	263	234
No Yes	Taeniopygia guttata 57_1c (all transcripts)	Zebra finch	226	204
No Yes	Meleagris gallopavo 57_2 (all transcripts)	Turkey	221	202
No Yes	Gallus gallus 49_2g (all transcripts)	Chicken	265	240
No Yes	Xenopus laevis	African clawed frog	543	500
No Yes	Xenopus tropicalis 49_41i (all transcripts)	Western clawed frog	463	438
No Yes	Danio rerio 49_7c (all transcripts)	Zebrafish	770	728
No Yes	Gasterosteus aculeatus 49_1f (all transcripts)	Three-spined stickleback	499	456
No Yes	Oryzias latipes 49_1e (all transcripts)	Japanese medaka	418	370
No Yes	Tetraodon nigroviridis 49_1k (all transcripts)	Spotted green pufferfish	305	273
No Yes	Takifugu rubripes 49_4i (all transcripts)	Torafugu	874	778
No Yes	Branchiostoma floridae 1.0	Florida lancelet	823	769
No Yes	Ciona savignyi 49_2f (all transcripts)		154	145
No Yes	Ciona intestinalis 49_2i (all transcripts)		172	153
No Yes	Strongylocentrotus purpuratus	Purple sea urchin	466	420
No Yes	Helobdella robusta		289	274
No Yes	Capitella sp. I		229	209
No Yes	Bombyx mori	Domestic silkworm	65	61
No Yes	Nasonia vitripennis	Jewel wasp	122	103
No Yes	Apis mellifera 37.2d (all transcripts) (Not maintained)	Honey bee	150	137
No Yes	Drosophila grimshawi 1.3		128	119
No Yes	Drosophila willistoni 1.3		128	118
No Yes	Drosophila pseudoobscura 2.3		158	145
No Yes	Drosophila persimilis 1.3		146	140
No Yes	Drosophila yakuba 1.3		141	129
No Yes	Drosophila simulans 1.3		110	102
No Yes	Drosophila sechellia 1.3		121	112
No Yes	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Fruit fly	189	172
No Yes	Drosophila erecta 1.3		135	124
No Yes	Drosophila ananassae 1.3		136	125
No Yes	Drosophila virilis 1.2		133	123
No Yes	Drosophila mojavensis 1.3		131	122
No Yes	Aedes aegypti 49_1b (all transcripts)	Yellow fever mosquito	160	143
No Yes	Culex pipiens quinquefasciatus	Southern house mosquito	177	150
No Yes	Anopheles gambiae 49_3j (all transcripts)	African malaria mosquito	115	106
No Yes	Tribolium castaneum 3.0	Red flour beetle	152	137
No Yes	Pediculus humanus corporis (Early assembly)	Human body louse	131	116
No Yes	Acyrthosiphon pisum	Pea aphid	113	101
No Yes	Daphnia pulex	Common water flea	212	191
No Yes	Ixodes scapularis (Preliminary)	Black-legged tick	132	119
No Yes	Lottia gigantea		289	254
No Yes	Pristionchus pacificus		229	210
No Yes	Meloidogyne incognita	Southern root-knot nematode	225	198
No Yes	Meloidogyne hapla		114	98
No Yes	Brugia malayi	Agent of lymphatic filariasis	68	60
No Yes	Caenorhabditis japonica		117	108
No Yes	Caenorhabditis brenneri		313	271
No Yes	Caenorhabditis remanei		375	329
No Yes	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Nematode	256	207
No Yes	Caenorhabditis briggsae 2		204	181
No Yes	Schistosoma mansoni		106	97
No Yes	Nematostella vectensis 1.0	Starlet sea anemone	284	256
No Yes	Hydra magnipapillata		143	134
No Yes	Trichoplax adhaerens		94	82
No Yes	Proterospongia sp. ATCC 50818		105	96
No Yes	Monosiga brevicollis		100	91
No Yes	Capsaspora owczarzaki ATCC 30864		110	106
No Yes	Malassezia globosa CBS 7966		31	29
No Yes	Ustilago maydis		47	44
No Yes	Puccinia graminis f. sp. tritici CRL 75-36-700-3		160	152
No Yes	Melampsora laricis-populina		84	81
No Yes	Sporobolomyces roseus IAM 13481		39	34
No Yes	Serpula lacrymans var. lacrymans S7.9		67	61
No Yes	Coprinopsis cinerea okayama7 130		63	57
No Yes	Pleurotus ostreatus	Oyster mushroom	85	77
No Yes	Laccaria bicolor S238N-H82		117	96
No Yes	Agaricus bisporus var. bisporus		70	62
No Yes	Schizophyllum commune		99	87
No Yes	Heterobasidion annosum		77	71
No Yes	Phanerochaete chrysosporium RP-78 2.1		55	46
No Yes	Postia placenta		91	80
No Yes	Tremella mesenterica		53	50
No Yes	Cryptococcus neoformans JEC21		46	44
No Yes	Magnaporthe grisea 70-15		68	62
No Yes	Podospora anserina		77	71
No Yes	Sporotrichum thermophile ATCC 42464		66	59
No Yes	Thielavia terrestris NRRL 8126		70	64
No Yes	Chaetomium globosum CBS 148.51		70	60
No Yes	Neurospora tetrasperma		72	62
No Yes	Neurospora discreta FGSC 8579		73	64
No Yes	Neurospora crassa OR74A		69	60
No Yes	Cryphonectria parasitica	Chestnut blight fungus	67	61
No Yes	Fusarium oxysporum f. sp. lycopersici 4286		75	71
No Yes	Nectria haematococca mpVI		84	70
No Yes	Fusarium verticillioides 7600		68	63
No Yes	Fusarium graminearum		75	70
No Yes	Trichoderma atroviride		74	62
No Yes	Trichoderma reesei 1.2		71	64
No Yes	Trichoderma virens Gv29-8		69	60
No Yes	Verticillium dahliae VdLs.17		71	65
No Yes	Verticillium albo-atrum VaMs.102		64	60
No Yes	Botrytis cinerea B05.10		82	71
No Yes	Sclerotinia sclerotiorum		78	67
No Yes	Alternaria brassicicola		74	69
No Yes	Pyrenophora tritici-repentis		84	78
No Yes	Cochliobolus heterostrophus		71	65
No Yes	Stagonospora nodorum		122	114
No Yes	Mycosphaerella fijiensis CIRAD86		78	72
No Yes	Mycosphaerella graminicola IPO323		97	89
No Yes	Ajellomyces dermatitidis SLH14081		68	64
No Yes	Histoplasma capsulatum class NAmI strain WU24		59	56
No Yes	Microsporum gypseum		58	55
No Yes	Arthroderma benhamiae CBS 112371		50	46
No Yes	Microsporum canis CBS 113480		62	58
No Yes	Trichophyton equinum CBS 127.97		67	62
No Yes	Trichophyton verrucosum HKI 0517		49	46
No Yes	Trichophyton tonsurans CBS 112818		63	58
No Yes	Trichophyton rubrum CBS 118892		63	59
No Yes	Paracoccidioides brasiliensis Pb18		51	47
No Yes	Coccidioides posadasii RMSCC 3488		70	66
No Yes	Coccidioides immitis RS		69	65
No Yes	Uncinocarpus reesii 1704		58	55
No Yes	Aspergillus fumigatus Af293		70	64
No Yes	Neosartorya fischeri NRRL 181		71	66
No Yes	Penicillium chrysogenum Wisconsin 54-1255		70	67
No Yes	Penicillium marneffei ATCC 18224		78	69
No Yes	Aspergillus carbonarius ITEM 5010		66	62
No Yes	Aspergillus terreus NIH2624		59	54
No Yes	Aspergillus oryzae RIB40		60	57
No Yes	Aspergillus niger ATCC 1015		51	47
No Yes	Aspergillus flavus NRRL3357		54	52
No Yes	Aspergillus clavatus NRRL 1		66	64
No Yes	Aspergillus nidulans FGSC A4		59	56
No Yes	Tuber melanosporum Vittad	Perigord truffle	69	63
No Yes	Candida dubliniensis CD36		43	41
No Yes	Candida tropicalis MYA-3404		46	44
No Yes	Candida parapsilosis		42	40
No Yes	Candida albicans SC5314		42	40
No Yes	Yarrowia lipolytica CLIB122		55	52
No Yes	Candida lusitaniae ATCC 42720		47	45
No Yes	Vanderwaltozyma polyspora DSM 70294		39	37
No Yes	Candida glabrata CBS138		43	40
No Yes	Kluyveromyces thermotolerans CBS 6340		42	40
No Yes	Lachancea kluyveri		45	42
No Yes	Kluyveromyces waltii		40	37
No Yes	Lodderomyces elongisporus NRRL YB-4239		45	43
No Yes	Ashbya gossypii ATCC 10895		35	34
No Yes	Debaromyces hansenii		43	41
No Yes	Zygosaccharomyces rouxii		39	37
No Yes	Saccharomyces mikatae MIT		38	36
No Yes	Saccharomyces paradoxus MIT		41	40
No Yes	Saccharomyces cerevisiae SGD (SGD)	Baker's yeast	40	38
No Yes	Saccharomyces bayanus MIT		39	37
No Yes	Candida guilliermondii ATCC 6260		70	60
No Yes	Pichia stipitis CBS 6054		46	44
No Yes	Pichia pastoris GS115		48	47
No Yes	Kluyveromyces lactis		37	36
No Yes	Schizosaccharomyces octosporus yFS286		56	52
No Yes	Schizosaccharomyces japonicus yFS275		48	46
No Yes	Schizosaccharomyces pombe	Fission yeast	58	54
No Yes	Allomyces macrogynus ATCC 38327		160	148
No Yes	Rhizopus oryzae RA 99-880		66	62
No Yes	Phycomyces blakesleeanus		90	83
No Yes	Mucor circinelloides		97	87
No Yes	Encephalitozoon intestinalis		22	22
No Yes	Encephalitozoon cuniculi		22	22
No Yes	Spizellomyces punctatus DAOM BR117		81	75
No Yes	Batrachochytrium dendrobatidis JEL423		68	64
No Yes	Dictyostelium discoideum		170	147
No Yes	Dictyostelium purpureum		258	238
No Yes	Entamoeba dispar		86	67
No Yes	Entamoeba invadens		91	62
No Yes	Entamoeba histolytica 1		96	72
No Yes	Arabidopsis lyrata	Lyrate rockcress	647	589
No Yes	Arabidopsis thaliana 9 (all transcripts)	Thale cress	725	666
No Yes	Carica papaya	Papaya	356	338
No Yes	Medicago truncatula	Barrel medic	388	368
No Yes	Glycine max	Soybean	934	896
No Yes	Cucumis sativus	Cucumber	655	625
No Yes	Populus trichocarpa 1.1	Black cottonwood	704	668
No Yes	Vitis vinifera	Wine grape	391	368
No Yes	Brachypodium distachyon		664	626
No Yes	Oryza sativa ssp. japonica 5.0	Japanese rice	827	755
No Yes	Zea mays subsp. mays	Maize	960	917
No Yes	Sorghum bicolor	Sorghum	586	542
No Yes	Selaginella moellendorffii		506	469
No Yes	Physcomitrella patens subsp. patens		314	287
No Yes	Coccomyxa sp. C-169		106	95
No Yes	Chlorella sp. NC64A		124	115
No Yes	Chlorella vulgaris		81	75
No Yes	Volvox carteri f. nagariensis		120	113
No Yes	Chlamydomonas reinhardtii 4.0		133	127
No Yes	Ostreococcus sp. RCC809		73	70
No Yes	Ostreococcus lucimarinus CCE9901		70	67
No Yes	Ostreococcus tauri		61	57
No Yes	Micromonas sp. RCC299		111	105
No Yes	Micromonas pusilla CCMP1545		97	90
No Yes	Cyanidioschyzon merolae		43	43
No Yes	Giardia lamblia		57	52
No Yes	Trypanosoma cruzi strain CL Brener		118	112
No Yes	Trypanosoma brucei		66	62
No Yes	Leishmania mexicana		68	67
No Yes	Leishmania major strain Friedlin		70	69
No Yes	Leishmania infantum JPCM5		67	65
No Yes	Leishmania braziliensis MHOM/BR/75/M2904		66	65
No Yes	Aureococcus anophagefferens		116	107
No Yes	Phytophthora ramorum 1.1	Sudden oak death agent	126	118
No Yes	Phytophthora sojae 1.1		143	139
No Yes	Phytophthora infestans T30-4		136	131
No Yes	Phytophthora capsici		103	100
No Yes	Phaeodactylum tricornutum		82	80
No Yes	Fragilariopsis cylindrus		219	199
No Yes	Thalassiosira pseudonana		87	84
No Yes	Paramecium tetraurelia		758	671
No Yes	Tetrahymena thermophila SB210 1		353	299
No Yes	Babesia bovis T2Bo		33	33
No Yes	Theileria parva		33	33
No Yes	Theileria annulata		33	33
No Yes	Plasmodium falciparum 3D7		40	38
No Yes	Plasmodium vivax SaI-1		41	39
No Yes	Plasmodium knowlesi strain H		41	39
No Yes	Plasmodium yoelii ssp. yoelii 1		38	36
No Yes	Plasmodium chabaudi		46	45
No Yes	Plasmodium berghei ANKA		42	41
No Yes	Cryptosporidium hominis		41	41
No Yes	Cryptosporidium muris		54	52
No Yes	Cryptosporidium parvum Iowa II		45	45
No Yes	Neospora caninum Nc-Liverpool		61	60
No Yes	Neospora caninum		53	52
No Yes	Toxoplasma gondii ME49		67	66
No Yes	Naegleria gruberi		102	92
No Yes	Trichomonas vaginalis		156	144
No Yes	Guillardia theta		3	3
No Yes	Emiliania huxleyi CCMP1516		709	683
No Yes	Aminobacterium colombiense DSM 12261		1	1
No Yes	Streptosporangium roseum DSM 43021		1	1
No Yes	Streptomyces griseus ssp. griseus NBRC 13350		1	1
No Yes	Streptomyces coelicolor A3(2)		1	1
No Yes	Kribbella flavida DSM 17836		1	1
No Yes	Candidatus Amoebophilus asiaticus 5a2		9	9
No Yes	Candidatus Protochlamydia amoebophila UWE25		2	2
No Yes	Clostridium phytofermentans ISDg		1	1
No Yes	Paenibacillus sp. JDR-2		1	1
No Yes	Syntrophobacter fumaroxidans MPOB		1	1
No Yes	Haliangium ochraceum DSM 14365		1	1
No Yes	Legionella longbeachae NSW150		1	1
No Yes	Legionella pneumophila ssp. pneumophila Philadelphia 1		2	1
No Yes	Drosophila melanogaster FlyBase 5.12 (all transcripts) (FlyBase)	Fruit fly	198	181
No Yes	Caenorhabditis elegans WormBase WS194 (all transcripts) (WormBase)	Nematode	216	184
No Yes	Cryptococcus neoformans var. grubii H99		50	47
No Yes	Cryptococcus neoformans B-3501A		56	53
No Yes	Ajellomyces dermatitidis ER-3		67	63
No Yes	Histoplasma capsulatum H143		50	49
No Yes	Histoplasma capsulatum H88		66	63
No Yes	Histoplasma capsulatum G186AR		63	60
No Yes	Paracoccidioides brasiliensis Pb01		51	47
No Yes	Paracoccidioides brasiliensis Pb03		50	46
No Yes	Coccidioides posadasii str. Silveira		67	63
No Yes	Coccidioides immitis RMSCC 3703		53	50
No Yes	Coccidioides immitis RMSCC 2394		67	63
No Yes	Coccidioides immitis H538.4		60	58
No Yes	Aspergillus fumigatus A1163		69	63
No Yes	Candida albicans WO-1		42	40
No Yes	Saccharomyces cerevisiae YJM789		40	38
No Yes	Saccharomyces cerevisiae RM11-1a		40	38
No Yes	Saccharomyces cerevisiae Ensembl 49_1h (all transcripts)	Baker's yeast	40	38
No Yes	Schizosaccharomyces pombe 972h-		58	54
No Yes	Batrachochytrium dendrobatidis JAM81		72	67
No Yes	Oryza sativa ssp. Indica (Subspecies)	Indian rice	561	520
No Yes	Plasmodium falciparum HB3		37	35
No Yes	Plasmodium falciparum Dd2		25	23
No Yes	Coxiella burnetii CbuG_Q212		1	1
No Yes	Coxiella burnetii Dugway 5J108-111		1	1
No Yes	Legionella pneumophila Paris		2	1
No Yes	Ailuropoda melanoleuca (Draft)	Giant panda	283	258
No Yes	Moniliophthora perniciosa FA553 (Genome survey)		20	19
No Yes	Lotus japonicus (Early assembly)		63	55
No Yes	Prunus persica (Early draft)	Peach	501	468
No Yes	Manihot esculenta (Early draft)	Cassava	697	654
No Yes	Ricinus communis (Early assembly)	Castor bean	418	393
No Yes	Mimulus guttatus (Early draft)	Spotted monkey flower	637	577
No Yes	Phoenix dactylifera (Early draft)	Date palm	185	175
No Yes	Trypanosoma vivax (Parial)		58	55
No Yes	Trypanosoma congolense (Partial)		75	71
No Yes	Toxoplasma gondii GT1 (Early assembly)		57	56
No Yes	Toxoplasma gondii VEG (Early assembly)		61	60
No Yes	Toxoplasma gondii RH (Archived)		63	62
No Yes	Homo sapiens 49_36k (longest transcript per gene)	Human	343	315
No Yes	Pan troglodytes 49_21h (longest transcript per gene)	Chimpanzee	306	279
No Yes	Gorilla gorilla 52_1 (longest transcript per gene)	Western Gorilla	215	205
No Yes	Pongo pygmaeus 49_1 (longest transcript per gene)	Bornean orangutan	296	273
No Yes	Macaca mulatta 49_10h (longest transcript per gene)	Rhesus monkey	297	271
No Yes	Callithrix jacchus 56_3 (longest transcript per gene)	White-tufted-ear marmoset	313	285
No Yes	Otolemur garnettii 49_1c (longest transcript per gene)	Small-eared galago	186	176
No Yes	Microcebus murinus 49_1 (longest transcript per gene)	Gray mouse lemur	201	185
No Yes	Tarsius syrichta 51_1 (longest transcript per gene)	Philippine tarsier	165	150
No Yes	Rattus norvegicus 49_34s (longest transcript per gene)	Norway rat	258	237
No Yes	Mus musculus 49_37b (longest transcript per gene)	House mouse	311	283
No Yes	Spermophilus tridecemlineatus 49_1e (longest transcript per gene)	Thirteen-lined ground squirrel	164	154
No Yes	Dipodomys ordii 51_1 (longest transcript per gene)	Ord's kangaroo rat	218	205
No Yes	Cavia porcellus 51_3 (longest transcript per gene)	Domestic guinea pig	271	246
No Yes	Oryctolagus cuniculus 49_1f (longest transcript per gene)	Rabbit	183	169
No Yes	Ochotona princeps 49_1 (longest transcript per gene)	American pika	215	197
No Yes	Tupaia belangeri 49_1d (longest transcript per gene)	Northern tree shrew	177	169
No Yes	Sus scrofa 56_9 (longest transcript per gene)	Pig	243	217
No Yes	Bos taurus 49_3f (longest transcript per gene)	Cattle	291	266
No Yes	Vicugna pacos 51_1 (longest transcript per gene)	Alpaca	161	147
No Yes	Tursiops truncatus 51_1 (longest transcript per gene)	Bottlenosed dolphin	254	233
No Yes	Canis familiaris 49_2g (longest transcript per gene)	Dog	281	256
No Yes	Felis catus 49_1c (longest transcript per gene)	Domestic cat	185	166
No Yes	Equus caballus 49_2 (longest transcript per gene)	Horse	277	248
No Yes	Myotis lucifugus 49_1e (longest transcript per gene)	Little brown bat	195	182
No Yes	Pteropus vampyrus 51_1 (longest transcript per gene)	Large flying fox	261	233
No Yes	Sorex araneus 49_1c (longest transcript per gene)	European shrew	181	165
No Yes	Erinaceus europaeus 49_1c (longest transcript per gene)	Western European hedgehog	189	179
No Yes	Procavia capensis 51_1 (longest transcript per gene)	Cape rock hyrax	213	194
No Yes	Loxodonta africana 49_1d (longest transcript per gene)	African savanna elephant	185	175
No Yes	Echinops telfairi 49_1e (longest transcript per gene)	Small Madagascar hedgehog	197	181
No Yes	Dasypus novemcinctus 49_1f (longest transcript per gene)	Nine-banded armadillo	160	151
No Yes	Macropus eugenii 55_1 (longest transcript per gene)	Tammar wallaby	194	180
No Yes	Monodelphis domestica 49_5d (longest transcript per gene)	Gray short-tailed opossum	320	294
No Yes	Ornithorhynchus anatinus 49_1f (longest transcript per gene)	Platypus	185	172
No Yes	Anolis carolinensis 55_1a (longest transcript per gene)	Green anole	261	232
No Yes	Taeniopygia guttata 57_1c (longest transcript per gene)	Zebra finch	216	194
No Yes	Meleagris gallopavo 57_2 (longest transcript per gene)	Turkey	208	192
No Yes	Gallus gallus 49_2g (longest transcript per gene)	Chicken	223	202
No Yes	Xenopus tropicalis 49_41i (longest transcript per gene)	Western clawed frog	277	257
No Yes	Danio rerio 49_7c (longest transcript per gene)	Zebrafish	402	368
No Yes	Gasterosteus aculeatus 49_1f (longest transcript per gene)	Three-spined stickleback	391	356
No Yes	Oryzias latipes 49_1e (longest transcript per gene)	Japanese medaka	354	310
No Yes	Tetraodon nigroviridis 49_1k (longest transcript per gene)	Spotted green pufferfish	305	273
No Yes	Takifugu rubripes 49_4i (longest transcript per gene)	Torafugu	311	270
No Yes	Ciona savignyi 49_2f (longest transcript per gene)		98	90
No Yes	Ciona intestinalis 49_2i (longest transcript per gene)		123	109
No Yes	Apis mellifera 37.2d (longest transcript per gene) (Not maintained)	Honey bee	87	76
No Yes	Drosophila melanogaster FlyBase 5.12 (longest transcript per gene) (FlyBase)	Fruit fly	198	181
No Yes	Drosophila melanogaster Ensembl 49_54 (longest transcript per gene)	Fruit fly	132	122
No Yes	Aedes aegypti 49_1b (longest transcript per gene)	Yellow fever mosquito	154	137
No Yes	Anopheles gambiae 49_3j (longest transcript per gene)	African malaria mosquito	112	103
No Yes	Caenorhabditis elegans WormBase WS194 (longest transcript per gene) (WormBase)	Nematode	186	164
No Yes	Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)	Nematode	184	164
No Yes	Arabidopsis thaliana 9 (longest transcript per gene)	Thale cress	598	543
No Yes	Oryza sativa ssp. japonica 5.0 (Not transposons)	Japanese rice	823	751
No Yes	NCBI viral sequences (Viral)		270	266
No Yes	PDB chains (SCOP 1.73) (PDB)		25	25
No Yes	TargetDB (Targets)		580	518
No Yes	UniProt 15.0 (UniProt)		21831	20371
No Yes	UniProt 15.0 viral sequences (Viral)		367	363