SUPERFAMILY 1.75 HMM library and genome assignments server

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H-NS histone-like proteins superfamily domain assignments
in
Archaeoglobus fulgidus DSM 4304


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Select to display   Genome       Domains   Proteins
No Yes ALL   164610 164610
No Yes Rhodnius prolixus 22   2 1
No Yes Medicago truncatula Barrel medic 2 2
No Yes Phytophthora capsici   1 1
No Yes Pelodictyon phaeoclathratiforme BU-1   1 1
No Yes Chlorobium limicola DSM 245   2 2
No Yes Prosthecochloris aestuarii DSM 271   1 1
No Yes Acidithiobacillus ferrivorans SS3   1 1
No Yes Desulfotalea psychrophila LSv54   2 1
No Yes Dechloromonas aromatica RCB   1 1
No Yes Thauera sp. MZ1T   2 2
No Yes Azoarcus sp. KH32C   3 3
No Yes Azoarcus sp. BH72   2 2
No Yes Aromatoleum aromaticum EbN1   7 7
No Yes Dechlorosoma suillum PS   1 1
No Yes Pseudogulbenkiania sp. NH8B   2 2
No Yes Laribacter hongkongensis HLHK9   3 3
No Yes Chromobacterium violaceum ATCC 12472   2 2
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   1 1
No Yes beta proteobacterium CB   1 1
No Yes Methylibium petroleiphilum PM1   3 3
No Yes Thiomonas arsenitoxydans   2 2
No Yes Thiomonas intermedia K12   1 1
No Yes Rubrivivax gelatinosus IL144   5 5
No Yes Leptothrix cholodnii SP-6   3 3
No Yes Burkholderia rhizoxinica HKI 454   4 4
No Yes Burkholderia phytofirmans PsJN   14 12
No Yes Burkholderia phymatum STM815   16 13
No Yes Burkholderia xenovorans LB400   10 8
No Yes Ralstonia eutropha JMP134   9 9
No Yes Cupriavidus taiwanensis LMG 19424   9 9
No Yes Cupriavidus metallidurans CH34   4 4
No Yes Cupriavidus necator N-1   17 17
No Yes Ralstonia eutropha H16   7 7
No Yes Ralstonia pickettii 12D   8 8
No Yes Ralstonia solanacearum CFBP2957   5 5
No Yes Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1   1 1
No Yes Burkholderia sp. RPE64   7 6
No Yes Burkholderia sp. CCGE1002   10 8
No Yes Burkholderia thailandensis E264   12 12
No Yes Burkholderia pseudomallei 1106a   13 13
No Yes Burkholderia mallei SAVP1   6 6
No Yes Burkholderia ambifaria AMMD   8 8
No Yes Burkholderia cenocepacia HI2424   8 8
No Yes Burkholderia multivorans ATCC 17616   9 9
No Yes Burkholderia vietnamiensis G4   18 18
No Yes Burkholderia gladioli BSR3   26 26
No Yes Burkholderia glumae BGR1   5 5
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Alicycliphilus denitrificans K601   4 4
No Yes Ramlibacter tataouinensis TTB310   1 1
No Yes Delftia sp. Cs1-4   12 12
No Yes Delftia acidovorans SPH-1   12 12
No Yes Polaromonas sp. JS666   1 1
No Yes Polaromonas naphthalenivorans CJ2   6 6
No Yes Variovorax paradoxus S110   1 1
No Yes Rhodoferax ferrireducens T118   1 1
No Yes Acidovorax ebreus TPSY   1 1
No Yes Acidovorax sp. KKS102   1 1
No Yes Acidovorax sp. JS42   2 2
No Yes Acidovorax citrulli AAC00-1   2 2
No Yes Acidovorax avenae subsp. avenae ATCC 19860   2 2
No Yes Comamonas testosteroni CNB-2   3 3
No Yes Herbaspirillum seropedicae SmR1   1 1
No Yes Pusillimonas sp. T7-7   2 2
No Yes Bordetella petrii DSM 12804   1 1
No Yes Bordetella avium 197N   1 1
No Yes Bordetella pertussis Tohama I   1 1
No Yes Bordetella parapertussis 12822   1 1
No Yes Bordetella bronchiseptica RB50   1 1
No Yes Achromobacter xylosoxidans A8   2 2
No Yes Achromobacter xylosoxidans   1 1
No Yes Nitrosomonas eutropha C91   1 1
No Yes Nitrosomonas europaea ATCC 19718   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Jannaschia sp. CCS1   2 2
No Yes Ruegeria sp. TM1040   1 1
No Yes Ruegeria pomeroyi DSS-3   2 2
No Yes Ketogulonicigenium vulgare Y25   2 2
No Yes Ketogulonigenium vulgarum WSH-001   3 3
No Yes Rhodobacter sphaeroides ATCC 17029   2 2
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Paracoccus denitrificans PD1222   4 4
No Yes Hyphomicrobium sp. MC1   2 2
No Yes Hyphomicrobium denitrificans ATCC 51888   1 1
No Yes Oligotropha carboxidovorans OM4   2 2
No Yes Nitrobacter hamburgensis X14   2 2
No Yes Bradyrhizobium sp. ORS 278   1 1
No Yes Bartonella tribocorum CIP 105476   1 1
No Yes Bartonella henselae str. Houston-1   1 1
No Yes Bartonella grahamii as4aup   1 1
No Yes Bartonella quintana str. Toulouse   1 1
No Yes Aggregatibacter aphrophilus NJ8700   2 1
No Yes Aggregatibacter actinomycetemcomitans D7S-1   2 1
No Yes Haemophilus somnus 129PT   2 1
No Yes Gallibacterium anatis UMN179   2 1
No Yes Pasteurella multocida subsp. multocida str. 3480   2 1
No Yes Haemophilus parasuis SH0165   2 1
No Yes Haemophilus parainfluenzae T3T1   2 1
No Yes Haemophilus influenzae PittEE   1 1
No Yes Actinobacillus succinogenes 130Z   2 1
No Yes Actinobacillus pleuropneumoniae serovar 5b str. L20   2 1
No Yes Oceanimonas sp. GK1   2 1
No Yes Tolumonas auensis DSM 9187   2 1
No Yes Aeromonas veronii B565   6 3
No Yes Aeromonas salmonicida subsp. salmonicida A449   8 4
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   6 3
No Yes Aliivibrio salmonicida LFI1238   3 2
No Yes Vibrio fischeri MJ11   3 2
No Yes Vibrio sp. Ex25   2 1
No Yes Vibrio harveyi ATCC BAA-1116   2 1
No Yes Vibrio parahaemolyticus RIMD 2210633   2 1
No Yes Vibrio splendidus LGP32   2 1
No Yes Vibrio anguillarum 775   2 1
No Yes Vibrio furnissii NCTC 11218   4 2
No Yes Vibrio vulnificus MO6-24/O   2 1
No Yes Vibrio cholerae O395   2 1
No Yes Photobacterium profundum SS9   2 1
No Yes Idiomarina loihiensis L2TR   2 1
No Yes Ferrimonas balearica DSM 9799   2 1
No Yes Shewanella piezotolerans WP3   2 1
No Yes Shewanella loihica PV-4   2 1
No Yes Shewanella halifaxensis HAW-EB4   2 1
No Yes Shewanella sediminis HAW-EB3   2 1
No Yes Shewanella denitrificans OS217   2 1
No Yes Shewanella pealeana ATCC 700345   2 1
No Yes Shewanella oneidensis MR-1   2 1
No Yes Shewanella baltica OS185   2 1
No Yes Shewanella woodyi ATCC 51908   2 1
No Yes Shewanella sp. MR-4   2 1
No Yes Shewanella amazonensis SB2B   2 1
No Yes Shewanella violacea DSS12   2 1
No Yes Shewanella frigidimarina NCIMB 400   2 1
No Yes Shewanella putrefaciens CN-32   2 1
No Yes Pseudoalteromonas atlantica T6c   2 1
No Yes Glaciecola sp. 4H-3-7+YE-5   2 1
No Yes Alteromonas sp. SN2   2 1
No Yes Alteromonas macleodii str. 'Deep ecotype'   2 1
No Yes Alcanivorax borkumensis SK2   1 1
No Yes Marinomonas posidonica IVIA-Po-181   2 1
No Yes Marinomonas sp. MWYL1   1 1
No Yes Marinomonas mediterranea MMB-1   2 1
No Yes Halomonas elongata DSM 2581   1 1
No Yes Methylomicrobium alcaliphilum   1 1
No Yes Methylomonas methanica MC09   1 1
No Yes Methylococcus capsulatus str. Bath   1 1
No Yes Dichelobacter nodosus VCS1703A   1 1
No Yes Rhodanobacter denitrificans   3 3
No Yes Frateuria aurantia DSM 6220   2 2
No Yes Pseudoxanthomonas spadix BD-a59   2 2
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Stenotrophomonas maltophilia K279a   2 2
No Yes Xylella fastidiosa M23   3 3
No Yes Xanthomonas axonopodis pv. citri str. 306   4 4
No Yes Xanthomonas albilineans GPE PC73   4 4
No Yes Xanthomonas oryzae pv. oryzae PXO99A   3 3
No Yes Xanthomonas campestris pv. campestris str. B100   4 4
No Yes Halothiobacillus neapolitanus c2   1 1
No Yes Spiribacter sp. UAH-SP71   1 1
No Yes Alkalilimnicola ehrlichii MLHE-1   1 1
No Yes Halorhodospira halophila SL1   2 2
No Yes Allochromatium vinosum DSM 180   1 1
No Yes Baumannia cicadellinicola str. Hc (Homalodisca coagulata)   2 1
No Yes Photorhabdus asymbiotica   4 2
No Yes Photorhabdus luminescens subsp. laumondii TTO1   3 2
No Yes Xenorhabdus bovienii SS-2004   2 1
No Yes Xenorhabdus nematophila ATCC 19061   2 1
No Yes Providencia stuartii MRSN 2154   2 1
No Yes Proteus mirabilis HI4320   4 2
No Yes Edwardsiella ictaluri 93-146   4 2
No Yes Edwardsiella tarda EIB202   3 2
No Yes Rahnella sp. Y9602   4 2
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   4 2
No Yes Yersinia pseudotuberculosis IP 31758   4 2
No Yes Yersinia pestis Pestoides F   2 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   2 1
No Yes Serratia sp. AS12   2 1
No Yes Serratia symbiotica str. 'Cinara cedri'   2 1
No Yes Serratia sp. ATCC 39006   2 1
No Yes Serratia plymuthica AS9   2 1
No Yes Serratia proteamaculans 568   2 1
No Yes Dickeya dadantii Ech703   4 2
No Yes Dickeya zeae Ech1591   6 3
No Yes Pectobacterium wasabiae WPP163   10 6
No Yes Pectobacterium sp. SCC3193   7 4
No Yes Pectobacterium atrosepticum SCRI1043   8 5
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   2 1
No Yes Sodalis glossinidius str. 'morsitans'   4 2
No Yes Halyomorpha halys symbiont   2 1
No Yes Pantoea sp. At-9b   10 5
No Yes Pantoea vagans C9-1   8 4
No Yes Pantoea ananatis LMG 20103   6 3
No Yes Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis   2 1
No Yes Erwinia tasmaniensis Et1/99   10 5
No Yes Erwinia sp. Ejp617   4 2
No Yes Erwinia billingiae Eb661   4 2
No Yes Erwinia pyrifoliae Ep1/96   4 2
No Yes Erwinia amylovora ATCC 49946   4 2
No Yes Escherichia blattae DSM 4481   4 2
No Yes Cronobacter turicensis z3032   2 1
No Yes Cronobacter sakazakii ES15   2 1
No Yes Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)   2 1
No Yes Enterobacteriaceae bacterium strain FGI 57   4 2
No Yes Shigella sonnei Ss046   4 2
No Yes Shigella flexneri 5 str. 8401   4 2
No Yes Shigella dysenteriae Sd197   4 2
No Yes Shigella boydii CDC 3083-94   6 3
No Yes Salmonella bongori NCTC 12419   4 2
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   4 2
No Yes Klebsiella oxytoca E718   6 3
No Yes Klebsiella variicola At-22   4 2
No Yes Klebsiella pneumoniae NTUH-K2044   6 3
No Yes Enterobacter aerogenes KCTC 2190   4 2
No Yes Escherichia fergusonii ATCC 35469   4 2
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   4 2
No Yes Enterobacter sp. R4-368   4 2
No Yes Enterobacter sp. 638   4 2
No Yes Enterobacter asburiae LF7a   4 2
No Yes Enterobacter cloacae subsp. dissolvens SDM   4 2
No Yes Citrobacter rodentium ICC168   10 6
No Yes Citrobacter koseri ATCC BAA-895   4 2
No Yes Psychrobacter sp. G   1 1
No Yes Psychrobacter cryohalolentis K5   1 1
No Yes Acinetobacter oleivorans DR1   1 1
No Yes Acinetobacter calcoaceticus PHEA-2   1 1
No Yes Acinetobacter baumannii ATCC 17978   1 1
No Yes Acinetobacter sp. ADP1   1 1
No Yes Methylophaga sp. JAM1   1 1
No Yes Thioalkalimicrobium cyclicum ALM1   1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Burkholderia phenoliruptrix BR3459a   14 11
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Ralstonia pickettii 12J   5 5
No Yes Ralstonia solanacearum FQY_4   6 6
No Yes Ralstonia solanacearum Po82   6 6
No Yes Ralstonia solanacearum PSI07   5 5
No Yes Ralstonia solanacearum CMR15   5 5
No Yes Ralstonia solanacearum GMI1000   5 5
No Yes Burkholderia sp. YI23   8 7
No Yes Burkholderia sp. CCGE1003   8 7
No Yes Burkholderia sp. CCGE1001   11 9
No Yes Burkholderia sp. KJ006   9 9
No Yes Burkholderia thailandensis MSMB121   7 7
No Yes Burkholderia pseudomallei MSHR305   13 13
No Yes Burkholderia pseudomallei NCTC 13179   13 13
No Yes Burkholderia pseudomallei BPC006   12 12
No Yes Burkholderia pseudomallei 1026b   16 16
No Yes Burkholderia pseudomallei MSHR346   6 6
No Yes Burkholderia pseudomallei 668   13 13
No Yes Burkholderia pseudomallei 1710b   14 14
No Yes Burkholderia pseudomallei K96243   15 15
No Yes Burkholderia mallei NCTC 10229   9 9
No Yes Burkholderia mallei NCTC 10247   8 8
No Yes Burkholderia mallei ATCC 23344   9 9
No Yes Burkholderia lata   9 9
No Yes Burkholderia ambifaria MC40-6   12 12
No Yes Burkholderia cenocepacia MC0-3   12 12
No Yes Burkholderia cenocepacia AU 1054   6 6
No Yes Burkholderia cenocepacia J2315   8 8
No Yes Burkholderia multivorans ATCC 17616   9 9
No Yes Burkholderia cepacia GG4   5 5
No Yes Alicycliphilus denitrificans BC   4 4
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   1 1
No Yes Bordetella pertussis CS   1 1
No Yes Bordetella parapertussis 18323   1 1
No Yes Bordetella parapertussis Bpp5   1 1
No Yes Bordetella bronchiseptica MO149   1 1
No Yes Bordetella bronchiseptica 253   1 1
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   1 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Octadecabacter antarcticus 307   4 4
No Yes Octadecabacter arcticus 238   6 6
No Yes Rhodobacter sphaeroides KD131   2 2
No Yes Rhodobacter sphaeroides ATCC 17025   5 5
No Yes Rhodobacter sphaeroides 2.4.1   5 5
No Yes Paracoccus aminophilus JCM 7686   2 2
No Yes Hyphomicrobium denitrificans 1NES1   1 1
No Yes Oligotropha carboxidovorans OM5   2 2
No Yes Oligotropha carboxidovorans OM5   2 2
No Yes Rhodopseudomonas palustris BisB5   1 1
No Yes Bradyrhizobium sp. S23321   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Bartonella australis Aust/NH1   1 1
No Yes Bartonella vinsonii subsp. berkhoffii str. Winnie   1 1
No Yes Bartonella quintana RM-11   1 1
No Yes Mannheimia succiniciproducens MBEL55E   2 1
No Yes Bibersteinia trehalosi USDA-ARS-USMARC-192   2 1
No Yes Aggregatibacter actinomycetemcomitans ANH9381   2 1
No Yes Aggregatibacter actinomycetemcomitans D11S-1   2 1
No Yes Haemophilus somnus 2336   2 1
No Yes Mannheimia haemolytica M42548   2 1
No Yes Mannheimia haemolytica D174   2 1
No Yes Mannheimia haemolytica D171   2 1
No Yes Mannheimia haemolytica D153   2 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-183   2 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-185   2 1
No Yes Pasteurella multocida 36950   2 1
No Yes Pasteurella multocida subsp. multocida str. HN06   2 1
No Yes Pasteurella multocida subsp. multocida str. Pm70   2 1
No Yes Haemophilus parasuis ZJ0906   2 1
No Yes Haemophilus influenzae KR494   2 1
No Yes Haemophilus influenzae F3047   2 1
No Yes Haemophilus influenzae F3031   2 1
No Yes Haemophilus influenzae 10810   2 1
No Yes Haemophilus influenzae PittGG   2 1
No Yes Haemophilus influenzae 86-028NP   2 1
No Yes Haemophilus influenzae R2866   2 1
No Yes Haemophilus influenzae R2846   2 1
No Yes Haemophilus influenzae Rd KW20   2 1
No Yes Actinobacillus suis H91-0380   2 1
No Yes Actinobacillus pleuropneumoniae serovar 3 str. JL03   2 1
No Yes Actinobacillus pleuropneumoniae serovar 7 str. AP76   2 1
No Yes Aeromonas hydrophila ML09-119   6 3
No Yes Vibrio fischeri ES114   3 2
No Yes Vibrio sp. EJY3   4 2
No Yes Vibrio parahaemolyticus BB22OP   2 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   2 1
No Yes Vibrio anguillarum Listonella anguillarum M3   2 1
No Yes Vibrio nigripulchritudo VibrioScope   2 1
No Yes Vibrio vulnificus CMCP6   2 1
No Yes Vibrio vulnificus YJ016   2 1
No Yes Vibrio cholerae LMA3984-4   2 1
No Yes Vibrio cholerae M66-2   2 1
No Yes Vibrio cholerae O395   2 1
No Yes Vibrio cholerae IEC224   2 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   2 1
No Yes Vibrio cholerae MJ-1236   2 1
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   2 1
No Yes Idiomarina loihiensis GSL 199   2 1
No Yes Shewanella sp. W3-18-1   2 1
No Yes Shewanella sp. ANA-3   2 1
No Yes Shewanella baltica BA175   6 3
No Yes Shewanella baltica OS678   2 1
No Yes Shewanella baltica OS117   4 2
No Yes Shewanella baltica OS223   4 2
No Yes Shewanella baltica OS195   2 1
No Yes Shewanella baltica OS155   2 1
No Yes Shewanella sp. MR-7   2 1
No Yes Shewanella putrefaciens 200   4 2
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   2 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   2 1
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   2 1
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   2 1
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   2 1
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   2 1
No Yes Alteromonas macleodii str. 'English Channel 615'   2 1
No Yes Alteromonas macleodii AltDE1   2 1
No Yes Alteromonas macleodii str. 'English Channel 673'   2 1
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   2 1
No Yes Alteromonas macleodii str. 'Black Sea 11'   2 1
No Yes Alteromonas macleodii ATCC 27126   2 1
No Yes Alcanivorax dieselolei B5   1 1
No Yes Stenotrophomonas maltophilia D457   2 2
No Yes Stenotrophomonas maltophilia JV3   2 2
No Yes Stenotrophomonas maltophilia R551-3   2 2
No Yes Xylella fastidiosa subsp. fastidiosa GB514   3 3
No Yes Xylella fastidiosa M12   3 3
No Yes Xylella fastidiosa Temecula1   3 3
No Yes Xylella fastidiosa 9a5c   3 3
No Yes Xanthomonas citri subsp. citri Aw12879   4 4
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   4 4
No Yes Xanthomonas axonopodis pv. citrumelo F1   4 4
No Yes Xanthomonas axonopodis Xac29-1   4 4
No Yes Xanthomonas oryzae pv. oryzicola BLS256   3 3
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   3 3
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   3 3
No Yes Xanthomonas campestris pv. raphani 756C   3 3
No Yes Xanthomonas campestris pv. campestris str. 8004   3 3
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   3 3
No Yes Spiribacter salinus M19-40   1 1
No Yes Proteus mirabilis BB2000   2 1
No Yes Morganella morganii subsp. morganii KT   2 1
No Yes Edwardsiella tarda C07-087   4 2
No Yes Edwardsiella tarda FL6-60   4 2
No Yes Rahnella aquatilis HX2   4 2
No Yes Yersinia pseudotuberculosis PB1/+   2 1
No Yes Yersinia pseudotuberculosis YPIII   2 1
No Yes Yersinia pseudotuberculosis IP 32953   4 2
No Yes Yersinia pestis biovar Microtus str. 91001   2 1
No Yes Yersinia pestis A1122   2 1
No Yes Yersinia pestis Z176003   2 1
No Yes Yersinia pestis D182038   2 1
No Yes Yersinia pestis D106004   2 1
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   2 1
No Yes Yersinia pestis Nepal516   2 1
No Yes Yersinia pestis Antiqua   2 1
No Yes Yersinia pestis Angola   2 1
No Yes Yersinia pestis CO92   2 1
No Yes Yersinia pestis KIM10+   2 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   2 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   2 1
No Yes Serratia sp. AS13   2 1
No Yes Serratia plymuthica S13   2 1
No Yes Serratia plymuthica 4Rx13   2 1
No Yes Serratia marcescens FGI94   2 1
No Yes Serratia marcescens WW4   2 1
No Yes Serratia liquefaciens ATCC 27592   2 1
No Yes Dickeya dadantii Ech586   2 1
No Yes Dickeya dadantii 3937   6 3
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   2 1
No Yes Pantoea ananatis LMG 5342   6 3
No Yes Pantoea ananatis PA13   7 4
No Yes Pantoea ananatis AJ13355   6 3
No Yes Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony)   2 1
No Yes Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)   2 1
No Yes Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)   2 1
No Yes Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)   2 1
No Yes Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)   2 1
No Yes Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)   2 1
No Yes Buchnera aphidicola str. 5A (Acyrthosiphon pisum)   2 1
No Yes Buchnera aphidicola str. APS (Acyrthosiphon pisum)   2 1
No Yes Erwinia pyrifoliae DSM 12163   4 2
No Yes Erwinia amylovora CFBP1430   4 2
No Yes Cronobacter sakazakii CMCC 45402   2 1
No Yes Cronobacter sakazakii SP291   2 1
No Yes Cronobacter sakazakii ATCC BAA-894   2 1
No Yes Candidatus Blochmannia chromaiodes str. 640   2 1
No Yes Candidatus Blochmannia pennsylvanicus str. BPEN   2 1
No Yes Raoultella ornithinolytica B6   4 2
No Yes Shigella sonnei 53G   4 2
No Yes Shigella flexneri 2002017   4 2
No Yes Shigella flexneri 2a str. 2457T   4 2
No Yes Shigella flexneri 2a str. 301   4 2
No Yes Shigella dysenteriae 1617   4 2
No Yes Shigella boydii Sb227   4 2
No Yes Salmonella bongori N268-08   4 2
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   5 3
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   4 2
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   4 2
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   5 3
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   6 3
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   6 3
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   4 2
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   5 3
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   4 2
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   6 3
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   4 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   4 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   4 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   4 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   4 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   4 2
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   4 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   4 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   4 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   4 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   4 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   4 2
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   6 3
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   4 2
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   6 3
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   4 2
No Yes Salmonella enterica serovar Bovismorbificans genomics   4 2
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   4 2
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   4 2
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   6 3
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   4 2
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   4 2
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   4 2
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   4 2
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   6 3
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   6 3
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   6 3
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   5 3
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   4 2
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   4 2
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   4 2
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   4 2
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   4 2
No Yes Klebsiella oxytoca KCTC 1686   6 3
No Yes Klebsiella pneumoniae JM45   6 3
No Yes Klebsiella pneumoniae CG43   4 2
No Yes Klebsiella pneumoniae KCTC 2242   6 3
No Yes Klebsiella pneumoniae 342   4 2
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   6 3
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   4 2
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   4 2
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   4 2
No Yes Enterobacter aerogenes EA1509E   4 2
No Yes Escherichia coli E24377A   5 3
No Yes Escherichia coli E. coli PMV-1   4 2
No Yes Escherichia coli JJ1886   4 2
No Yes Escherichia coli LY180   4 2
No Yes Escherichia coli APEC O78   4 2
No Yes Escherichia coli O7:K1 str. CE10   4 2
No Yes Escherichia coli O104:H4 str. 2009EL-2050   4 2
No Yes Escherichia coli O104:H4 str. 2009EL-2071   4 2
No Yes Escherichia coli O104:H4 str. 2011C-3493   4 2
No Yes Escherichia coli NA114   4 2
No Yes Escherichia coli P12b   4 2
No Yes Escherichia coli str. 'clone D i2'   7 4
No Yes Escherichia coli str. 'clone D i14'   7 4
No Yes Escherichia coli UM146   4 2
No Yes Escherichia coli 042   8 5
No Yes Escherichia coli Xuzhou21   7 4
No Yes Escherichia coli IHE3034   4 2
No Yes Escherichia coli UMNK88   4 2
No Yes Escherichia coli O83:H1 str. NRG 857C   4 2
No Yes Escherichia coli ABU 83972   5 3
No Yes Escherichia coli KO11FL   4 2
No Yes Escherichia coli KO11FL   4 2
No Yes Escherichia coli LF82   4 2
No Yes Escherichia coli ED1a   6 3
No Yes Escherichia coli IAI39   4 2
No Yes Escherichia coli UMN026   6 3
No Yes Escherichia coli 55989   5 3
No Yes Escherichia coli S88   4 2
No Yes Escherichia coli IAI1   4 2
No Yes Escherichia coli W   4 2
No Yes Escherichia coli W   4 2
No Yes Escherichia coli DH1   4 2
No Yes Escherichia coli DH1   4 2
No Yes Escherichia coli ATCC 8739   4 2
No Yes Escherichia coli BL21(DE3)   4 2
No Yes Escherichia coli BL21(DE3)   4 2
No Yes Escherichia coli SMS-3-5   5 3
No Yes Escherichia coli SE15   4 2
No Yes Escherichia coli SE11   4 2
No Yes Escherichia coli APEC O1   4 2
No Yes Escherichia coli O103:H2 str. 12009   5 3
No Yes Escherichia coli UTI89   4 2
No Yes Escherichia coli 536   7 4
No Yes Escherichia coli HS   4 2
No Yes Escherichia coli ETEC H10407   4 2
No Yes Escherichia coli O55:H7 str. RM12579   5 3
No Yes Escherichia coli O55:H7 str. CB9615   5 3
No Yes Escherichia coli O26:H11 str. 11368   5 3
No Yes Escherichia coli CFT073   7 4
No Yes Escherichia coli O111:H- str. 11128   7 4
No Yes Escherichia coli O127:H6 str. E2348/69   6 4
No Yes Escherichia coli O157:H7 str. TW14359   5 3
No Yes Escherichia coli O157:H7 str. EC4115   5 3
No Yes Escherichia coli O157:H7 str. Sakai   5 3
No Yes Escherichia coli O157:H7 str. EDL933   5 3
No Yes Escherichia coli str. K-12 substr. MDS42   4 2
No Yes Escherichia coli BW2952   4 2
No Yes Escherichia coli str. K-12 substr. MG1655   4 2
No Yes Escherichia coli str. K-12 substr. W3110   4 2
No Yes Escherichia coli str. K-12 substr. DH10B   4 2
No Yes Escherichia coli B str. REL606   4 2
No Yes Enterobacter cloacae SCF1   4 2
No Yes Enterobacter cloacae EcWSU1   4 2
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   4 2
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   4 2
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   4 2
No Yes Acinetobacter genomosp. 13TU RUH2624   1 1
No Yes Acinetobacter sp. SH024   1 1
No Yes Acinetobacter calcoaceticus ruh2202   1 1
No Yes Acinetobacter baumannii ZW85-1   1 1
No Yes Acinetobacter baumannii TYTH-1   1 1
No Yes Acinetobacter baumannii BJAB0868   2 2
No Yes Acinetobacter baumannii BJAB0715   1 1
No Yes Acinetobacter baumannii BJAB07104   2 2
No Yes Acinetobacter baumannii TCDC-AB0715   2 2
No Yes Acinetobacter baumannii D1279779   1 1
No Yes Acinetobacter baumannii MDR-TJ   2 2
No Yes Acinetobacter baumannii 1656-2   2 2
No Yes Acinetobacter baumannii ATCC 19606   1 1
No Yes Acinetobacter baumannii AB307-0294   1 1
No Yes Acinetobacter baumannii AYE   1 1
No Yes Acinetobacter baumannii SDF   1 1
No Yes Acinetobacter baumannii MDR-ZJ06   1 1
No Yes Acinetobacter baumannii AB0057   1 1
No Yes Acinetobacter baumannii ACICU   2 2
No Yes Acinetobacter radioresistens SH164   1 1
No Yes Acinetobacter junii SH205   1 1
No Yes Acinetobacter johnsonii SH046   1 1
No Yes Acinetobacter lwoffii SH145   1 1
No Yes Methylophaga sp. JAM7   1 1
No Yes Ricinus communis (Early assembly) Castor bean 5 2
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   2 1
No Yes 1_050719N (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   2 1
No Yes 5_050719P (meta-genome)   2 2
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   9 9
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   6 6
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   3 3
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   25 18
No Yes Combined (meta-genome)   32 27
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   58 43
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   9 7
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   12 7
No Yes Dump bottom (Dump bottom) (meta-genome)   10 10
No Yes Dump top (Dump top) (meta-genome)   18 18
No Yes Endophytic microbiome from Rice (meta-genome)   4 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   4 4
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   33 28
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   41 32
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   62 45
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   13 13
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   2 2
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   2 2
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   2 2
No Yes NCBI 2017_08 genome   146920 92816
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   6 6
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   10 10
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   5 5
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   11 11
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   4 4
No Yes Sludge/US, Jazz Assembly (meta-genome)   4 4
No Yes Sludge/US, Phrap Assembly (meta-genome)   7 7
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   11 11
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   8 8
No Yes STRING v9.0.5 (STRING)   956 709
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   4 4
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   12762 9510
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   7 5
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   102 93
No Yes NCBI plasmid sequences (Plasmids)   454 312
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   19 19
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   33 33
No Yes TargetDB (Targets)   6 4
No Yes The Salmonella enterica Pan-genome (meta-genome)   136 70

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