SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


F-box domain superfamily domain assignments


No domain assignments for these genomes.


Add assignments from groups of genomes

View all assignments containing a F-box domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   314678 314678
No Yes Homo sapiens 76_38 Human 192 192
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 59 59
No Yes Gorilla gorilla 76_3.1 Western gorilla 81 81
No Yes Pongo abelii 76_2 Sumatran orangutan 63 63
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 68 68
No Yes Papio anubis 76 Olive baboon 67 67
No Yes Macaca mulatta 76_1 Rhesus monkey 89 89
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 124 124
No Yes Otolemur garnettii 76_3 Small-eared galago 67 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 39 39
No Yes Rattus norvegicus 76_5.0 Norway rat 64 64
No Yes Mus musculus 76_38 House mouse 162 162
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 48 48
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 55 55
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 60 60
No Yes Cavia porcellus 76_3 Domestic guinea pig 61 61
No Yes Oryctolagus cuniculus 76_2 Rabbit 59 59
No Yes Ochotona princeps 76 American pika 45 45
No Yes Tupaia belangeri 76 Northern tree shrew 29 29
No Yes Sus scrofa 76_10.2 Pig 59 59
No Yes Bos taurus 76_3.1 Cattle 71 71
No Yes Ovis aries 76_3.1 Sheep 68 68
No Yes Vicugna pacos 76_1 Alpaca 30 30
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 51 51
No Yes Mustela putorius furo 76_1.0 Domestic ferret 60 60
No Yes Ailuropoda melanoleuca 76_1 Giant panda 64 64
No Yes Canis familiaris 76_3.1 Dog 73 73
No Yes Felis catus 76_6.2 Domestic cat 61 61
No Yes Equus caballus 76_2 Horse 56 56
No Yes Myotis lucifugus 76_2.0 Little brown bat 141 141
No Yes Pteropus vampyrus 76_1 Large flying fox 57 57
No Yes Sorex araneus 76_1 European shrew 34 34
No Yes Erinaceus europaeus 76 Western European hedgehog 44 44
No Yes Procavia capensis 76_1 Cape rock hyrax 41 41
No Yes Loxodonta africana 76_3 African savanna elephant 78 78
No Yes Echinops telfairi 76 Small Madagascar hedgehog 35 35
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 64 64
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 26 26
No Yes Macropus eugenii 76_1.0 Tammar wallaby 34 34
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 57 57
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 65 65
No Yes Ornithorhynchus anatinus 76_5 Platypus 45 45
No Yes Saccoglossus kowalevskii v3.0   110 110
No Yes Petromyzon marinus 76_7.0 Sea lamprey 28 28
No Yes Meleagris gallopavo 76_2 Turkey 44 44
No Yes Gallus gallus 76_4 Chicken 50 50
No Yes Anas platyrhynchos 76_1.0 Mallard 45 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 51 51
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 51 51
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 60 60
No Yes Anolis carolinensis 76_2.0 Green anole 57 57
No Yes Xenopus laevis African clawed frog 104 104
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 66 66
No Yes Latimeria chalumnae 76_1 Coelacanth 74 74
No Yes Lepisosteus oculatus 76 Spotted gar 75 75
No Yes Gadus morhua 76_1 Atlantic cod 60 60
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 63 63
No Yes Takifugu rubripes 76_4 Torafugu 107 107
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 73 73
No Yes Oryzias latipes 76_1 Japanese medaka 64 64
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 72 72
No Yes Poecilia formosa 76 Amazon molly 72 72
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 87 87
No Yes Astyanax mexicanus 76 Mexican tetra 61 61
No Yes Danio rerio 76_9 Zebrafish 121 121
No Yes Oikopleura dioica   26 26
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 26 26
No Yes Ciona intestinalis 76 Vase tunicate 30 30
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 56 56
No Yes Adineta vaga   212 211
No Yes Octopus bimaculoides 280   55 55
No Yes Crassostrea gigas 22 Pacific oyster 52 52
No Yes Lottia gigantea Owl limpet 59 59
No Yes Helobdella robusta   33 33
No Yes Capitella sp. I   55 55
No Yes Danaus plexippus OGS1.0 Monarch butterfly 34 33
No Yes Heliconius melpomene Postman butterfly 29 29
No Yes Bombyx mori Domestic silkworm 14 14
No Yes Nasonia vitripennis Jewel wasp 35 33
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 44 44
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 26 26
No Yes Linepithema humile v1.1 Argentine ant 30 30
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 30 30
No Yes Solenopsis invicta v.2.2.3 Red fire ant 41 41
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 28 28
No Yes Atta cephalotes v1.1   27 27
No Yes Camponotus floridanus v3.3 Florida carpenter ant 30 30
No Yes Lucilia cuprina Australian sheep blowfly 26 26
No Yes Drosophila grimshawi 1.3   28 28
No Yes Drosophila willistoni 1.3   32 32
No Yes Drosophila pseudoobscura 2.13   27 27
No Yes Drosophila persimilis 1.3   28 28
No Yes Drosophila suzukii   31 28
No Yes Drosophila yakuba 1.3   25 25
No Yes Drosophila simulans 1.3   27 27
No Yes Drosophila sechellia 1.3   26 26
No Yes Drosophila melanogaster 76_5 Fruit fly 56 56
No Yes Drosophila erecta 1.3   25 25
No Yes Drosophila ananassae 1.3   28 28
No Yes Drosophila virilis 1.2   29 29
No Yes Drosophila mojavensis 1.3   28 28
No Yes Megaselia scalaris 22   10 10
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 46 46
No Yes Culex pipiens quinquefasciatus Southern house mosquito 150 149
No Yes Anopheles darlingi 22 American malaria mosquito 27 25
No Yes Anopheles gambiae 49_3j African malaria mosquito 33 33
No Yes Tribolium castaneum 3.0 Red flour beetle 33 33
No Yes Pediculus humanus corporis (Early assembly) Human body louse 31 31
No Yes Acyrthosiphon pisum Pea aphid 24 24
No Yes Rhodnius prolixus 22   41 41
No Yes Daphnia pulex Common water flea 70 70
No Yes Strigamia maritima 22   36 36
No Yes Sarcoptes scabiei   10 10
No Yes Tetranychus urticae Two-spotted spider mite 82 82
No Yes Ixodes scapularis (Preliminary) Black-legged tick 43 43
No Yes Pristionchus pacificus   69 69
No Yes Meloidogyne incognita Southern root-knot nematode 110 105
No Yes Meloidogyne hapla   56 56
No Yes Onchocerca volvulus 22   35 35
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 35 35
No Yes Caenorhabditis japonica   21 21
No Yes Caenorhabditis brenneri   108 107
No Yes Caenorhabditis remanei   125 122
No Yes Caenorhabditis elegans 76_235 Roundworm 116 116
No Yes Caenorhabditis briggsae 2   44 44
No Yes Trichinella spiralis 22   19 19
No Yes Hymenolepis microstoma   19 19
No Yes Echinococcus multilocularis   17 17
No Yes Echinococcus granulosus   16 16
No Yes Taenia solium Pork tapeworm 17 17
No Yes Schistosoma mansoni   29 29
No Yes Mnemiopsis leidyi Sea walnut 33 33
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   36 36
No Yes Nematostella vectensis 1.0 Starlet sea anemone 72 72
No Yes Hydra vulgaris   23 23
No Yes Amphimedon queenslandica   32 32
No Yes Trichoplax adhaerens   41 41
No Yes Proterospongia sp. ATCC 50818   33 33
No Yes Monosiga brevicollis   20 20
No Yes Sphaeroforma arctica JP610   38 38
No Yes Capsaspora owczarzaki ATCC 30864   36 34
No Yes Conidiobolus coronatus NRRL28638 v1.0   49 49
No Yes Mortierella verticillata NRRL 6337   188 188
No Yes Phycomyces blakesleeanus   246 245
No Yes Rhizopus oryzae RA 99-880   46 46
No Yes Mucor circinelloides   111 110
No Yes Rhizomucor miehei CAU432   83 83
No Yes Malassezia globosa CBS 7966   16 16
No Yes Sporisorium reilianum 22   22 22
No Yes Ustilago maydis   21 21
No Yes Mixia osmundae IAM 14324 v1.0   27 27
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   19 19
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   16 16
No Yes Melampsora laricis-populina   17 17
No Yes Rhodotorula graminis WP1 v1.0   41 41
No Yes Sporobolomyces roseus IAM 13481   30 30
No Yes Microbotryum violaceum 22   24 24
No Yes Wallemia sebi v1.0   17 17
No Yes Sphaerobolus stellatus v1.0   205 205
No Yes Piloderma croceum F 1598 v1.0   114 114
No Yes Serpula lacrymans var. lacrymans S7.9   46 46
No Yes Coniophora puteana   121 120
No Yes Hydnomerulius pinastri v2.0   78 78
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   56 56
No Yes Pisolithus microcarpus 441 v1.0   55 55
No Yes Pisolithus tinctorius Marx 270 v1.0   74 74
No Yes Scleroderma citrinum Foug A v1.0   100 99
No Yes Coprinopsis cinerea okayama7 130 v3   179 177
No Yes Pleurotus ostreatus Oyster mushroom 116 115
No Yes Amanita thiersii Skay4041 v1.0   62 62
No Yes Amanita muscaria Koide v1.0 Fly agaric 122 122
No Yes Galerina marginata v1.0   282 282
No Yes Hebeloma cylindrosporum h7 v2.0   197 197
No Yes Laccaria bicolor S238N-H82   119 118
No Yes Agaricus bisporus var. bisporus   85 85
No Yes Schizophyllum commune   231 224
No Yes Stereum hirsutum FP-91666 SS1 v1.0   151 150
No Yes Heterobasidion annosum   59 59
No Yes Gloeophyllum trabeumv1.0   89 89
No Yes Punctularia strigosozonata v1.0   71 70
No Yes Sebacina vermifera MAFF 305830 v1.0   232 228
No Yes Fomitiporia mediterranea v1.0   84 84
No Yes Tulasnella calospora AL13/4D v1.0   306 300
No Yes Postia placenta   151 151
No Yes Wolfiporia cocos MD-104 SS10 v1.0   107 107
No Yes Fomitopsis pinicolav1.0   135 134
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   151 151
No Yes Phanerochaete chrysosporium RP-78 2.1   91 90
No Yes Dichomitus squalens   120 120
No Yes Trametes versicolor v1.0   189 188
No Yes Tremella mesenterica Witches' butter 18 18
No Yes Daldinia eschscholzii EC12 v1.0   53 53
No Yes Apiospora montagnei NRRL 25634 v1.0   75 75
No Yes Magnaporthe poae ATCC 64411 22   37 37
No Yes Magnaporthe grisea 70-15   44 44
No Yes Podospora anserina   41 41
No Yes Sporotrichum thermophile ATCC 42464   39 39
No Yes Thielavia terrestris NRRL 8126   40 40
No Yes Chaetomium globosum CBS 148.51   37 37
No Yes Neurospora tetrasperma   35 35
No Yes Neurospora discreta FGSC 8579   33 33
No Yes Neurospora crassa OR74A   36 36
No Yes Cryphonectria parasitica Chestnut blight fungus 33 33
No Yes Verticillium albo-atrum VaMs.102   21 21
No Yes Verticillium dahliae VdLs.17   36 36
No Yes Acremonium alcalophilumv 1.0   30 30
No Yes Glomerella graminicola 22   34 34
No Yes Fusarium graminearum   51 51
No Yes Nectria haematococca mpVI   75 75
No Yes Fusarium oxysporum f. sp. lycopersici 4286   36 36
No Yes Fusarium verticillioides 7600   38 38
No Yes Trichoderma asperellum CBS 433.97 v1.0   54 54
No Yes Trichoderma atroviride   55 55
No Yes Trichoderma citrinoviride v1.0   40 40
No Yes Trichoderma reesei 1.2   38 38
No Yes Trichoderma virens Gv29-8   46 46
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   38 38
No Yes Trichoderma harzianum CBS 226.95 v1.0   47 47
No Yes Amorphotheca resinae v1.0 Creosote fungus 44 44
No Yes Botrytis cinerea B05.10   30 30
No Yes Sclerotinia sclerotiorum   37 37
No Yes Blumeria graminis 22   25 25
No Yes Didymella exigua CBS 183.55 v1.0   41 41
No Yes Leptosphaeria maculans 22   35 35
No Yes Setosphaeria turcica v1.0   55 55
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   52 52
No Yes Cochliobolus victoriae FI3 v1.0   57 57
No Yes Cochliobolus carbonum 26-R-13 v1.0   54 54
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 33 33
No Yes Alternaria brassicicola   30 30
No Yes Cochliobolus lunatus m118 v2.0   54 54
No Yes Pyrenophora teres f. teres 22   42 42
No Yes Pyrenophora tritici-repentis   48 48
No Yes Stagonospora nodorum   63 62
No Yes Mycosphaerella graminicola IPO323   59 58
No Yes Zasmidium cellare ATCC 36951 v1.0   107 107
No Yes Dothistroma septosporum   57 57
No Yes Septoria musiva v1.0   47 47
No Yes Mycosphaerella fijiensis CIRAD86   70 70
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   49 49
No Yes Paracoccidioides brasiliensis Pb18   35 35
No Yes Coccidioides posadasii RMSCC 3488   45 45
No Yes Coccidioides immitis RS   50 50
No Yes Ajellomyces dermatitidis SLH14081   42 42
No Yes Histoplasma capsulatum class NAmI strain WU24   36 36
No Yes Microsporum canis CBS 113480   41 41
No Yes Trichophyton equinum CBS 127.97   32 32
No Yes Trichophyton verrucosum HKI 0517   39 39
No Yes Arthroderma benhamiae CBS 112371   37 37
No Yes Trichophyton tonsurans CBS 112818   38 38
No Yes Trichophyton rubrum CBS 118892   43 43
No Yes Uncinocarpus reesii 1704   33 33
No Yes Aspergillus zonatus v1.0   45 45
No Yes Penicillium chrysogenum Wisconsin 54-1255   67 67
No Yes Penicillium chrysogenum v1.0   61 61
No Yes Aspergillus acidus v1.0   67 67
No Yes Aspergillus fumigatus Af293   40 40
No Yes Aspergillus brasiliensis v1.0   70 70
No Yes Aspergillus nidulans FGSC A4   42 42
No Yes Aspergillus sydowii v1.0   83 83
No Yes Aspergillus versicolor v1.0   59 59
No Yes Aspergillus glaucus   65 65
No Yes Aspergillus carbonarius ITEM 5010   53 53
No Yes Neosartorya fischeri NRRL 181   45 45
No Yes Aspergillus terreus NIH2624   44 44
No Yes Aspergillus tubingensis v1.0   59 59
No Yes Aspergillus wentii v1.0   72 72
No Yes Aspergillus oryzae RIB40   43 43
No Yes Aspergillus niger 22   58 58
No Yes Aspergillus niger ATCC 1015   50 50
No Yes Aspergillus flavus NRRL3357   43 43
No Yes Aspergillus clavatus NRRL 1   45 45
No Yes Penicillium marneffei ATCC 18224   39 39
No Yes Tuber melanosporum Mel28 22   39 39
No Yes Tuber melanosporum Vittad Perigord truffle 56 56
No Yes Hansenula polymorpha v2.0   7 7
No Yes Dekkera bruxellensis CBS 2499 v2.0   10 10
No Yes Pichia membranifaciensv1.0   9 9
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   13 13
No Yes Candida dubliniensis CD36   17 17
No Yes Candida tropicalis MYA-3404   20 20
No Yes Candida parapsilosis   15 15
No Yes Candida albicans SC5314   19 19
No Yes Lodderomyces elongisporus NRRL YB-4239   13 13
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   16 16
No Yes Pichia stipitis CBS 6054   16 16
No Yes Candida guilliermondii ATCC 6260   14 14
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   12 12
No Yes Debaromyces hansenii   17 17
No Yes Wickerhamomyces anomalus   18 18
No Yes Pichia pastoris GS115   10 10
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   2 2
No Yes Yarrowia lipolytica CLIB122   65 65
No Yes Candida lusitaniae ATCC 42720   17 17
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   17 17
No Yes Vanderwaltozyma polyspora DSM 70294   12 12
No Yes Candida glabrata CBS138   12 12
No Yes Kluyveromyces thermotolerans CBS 6340   13 13
No Yes Lachancea kluyveri   15 15
No Yes Kluyveromyces waltii   15 15
No Yes Ashbya gossypii ATCC 10895   11 11
No Yes Zygosaccharomyces rouxii   11 11
No Yes Saccharomyces mikatae MIT   8 8
No Yes Saccharomyces paradoxus MIT   11 11
No Yes Saccharomyces cerevisiae 76 Baker's yeast 11 11
No Yes Saccharomyces bayanus MIT   10 10
No Yes Kluyveromyces lactis   16 16
No Yes Schizosaccharomyces cryophilus OY26 22   11 11
No Yes Schizosaccharomyces octosporus yFS286   11 11
No Yes Schizosaccharomyces japonicus yFS275   10 10
No Yes Schizosaccharomyces pombe Fission yeast 12 12
No Yes Catenaria anguillulae PL171 v1.0   49 48
No Yes Allomyces macrogynus ATCC 38327   57 57
No Yes Spizellomyces punctatus DAOM BR117   77 77
No Yes Dictyostelium discoideum   46 45
No Yes Dictyostelium purpureum   46 45
No Yes Entamoeba dispar 1.2   14 14
No Yes Entamoeba invadens 1.2   27 27
No Yes Entamoeba histolytica 1   14 14
No Yes Selaginella moellendorffii   304 302
No Yes Pinus taeda Loblolly pine 220 207
No Yes Picea abies Norway spruce 185 184
No Yes Eucalyptus grandis v201 Rose gum 344 344
No Yes Theobroma cacao B97-61/B2 v1 Cacao 332 318
No Yes Gossypium raimondii v221   599 599
No Yes Citrus clementina v165   400 399
No Yes Citrus sinensis v154 Sweet orange 422 419
No Yes Thellungiella halophila v173   778 778
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 763 757
No Yes Capsella rubella v183   871 870
No Yes Arabidopsis lyrata Lyrate rockcress 762 754
No Yes Arabidopsis thaliana 10 Thale cress 731 731
No Yes Carica papaya Papaya 151 151
No Yes Medicago truncatula Barrel medic 1414 1401
No Yes Phaseolus vulgaris v186 French bean 288 287
No Yes Glycine max v109 Soybean 526 526
No Yes Cucumis sativus v122 Cucumber 207 207
No Yes Fragaria vesca Wild strawberry 857 821
No Yes Malus domestica v196 Apple 650 633
No Yes Prunus persica v139 Peach 397 396
No Yes Linum usitatissimum v200 Flax 491 487
No Yes Manihot esculenta v147 Cassava 271 271
No Yes Populus trichocarpa v156 Black cottonwood 374 374
No Yes Vitis vinifera Wine grape 144 142
No Yes Mimulus guttatus v140 Spotted monkey flower 731 728
No Yes Solanum lycopersicum v.2.3 Tomato 335 329
No Yes Solanum tuberosum Potato 644 644
No Yes Actinidia chinensis Hongyang   292 284
No Yes Aquilegia coerulea v195   710 705
No Yes Triticum urartu 22   857 846
No Yes Triticum aestivum 22 Bread wheat 723 719
No Yes Aegilops tauschii 22   1307 1280
No Yes Brachypodium distachyon Stiff brome 663 657
No Yes Oryza barthii 22 African wild rice 831 680
No Yes Oryza meridionalis 22   732 633
No Yes Oryza glumaepatula 22   1055 864
No Yes Oryza glaberrima African rice 536 535
No Yes Oryza punctata 22   683 604
No Yes Oryza nivara 22   1017 857
No Yes Oryza brachyantha 22 Malo sina 248 244
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 857 847
No Yes Oryza sativa v193 Rice 850 840
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 221 221
No Yes Panicum virgatum v202 Switchgrass 1155 1148
No Yes Setaria italica v164 Foxtail millet 753 746
No Yes Zea mays subsp. mays Maize 357 357
No Yes Zea mays v181 Maize 412 412
No Yes Sorghum bicolor Sorghum 634 614
No Yes Musa balbisiana Balbis banana 293 293
No Yes Musa acuminata 22 Wild Malaysian banana 207 207
No Yes Amborella trichopoda 22   192 192
No Yes Physcomitrella patens   207 207
No Yes Coccomyxa subellipsoidea sp. C-169 v2   19 19
No Yes Asterochloris sp. Cgr/DA1pho v1.0   16 16
No Yes Chlorella variabilis sp. NC64A   60 58
No Yes Chlorella vulgaris   13 13
No Yes Volvox carteri f. nagariensis   41 41
No Yes Volvox carteri v199   44 44
No Yes Chlamydomonas reinhardtii 4.0   42 42
No Yes Ostreococcus sp. RCC809   11 11
No Yes Ostreococcus lucimarinus CCE9901   8 8
No Yes Ostreococcus tauri   11 11
No Yes Bathycoccus prasinos   12 12
No Yes Micromonas sp. RCC299   28 28
No Yes Micromonas pusilla CCMP1545 v3.0   39 39
No Yes Cyanidioschyzon merolae strain 10D 22   5 5
No Yes Cyanidioschyzon merolae   5 5
No Yes Porphyridium purpureum 02_2012   19 19
No Yes Thecamonas trahens ATCC 50062   67 66
No Yes Bigelowiella natans CCMP2755 22   30 30
No Yes Cyanophora paradoxa   237 235
No Yes Leishmania mexicana 2.4   9 9
No Yes Leishmania major strain Friedlin   8 8
No Yes Leishmania infantum JPCM5 2.4   8 8
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   7 7
No Yes Trypanosoma vivax   11 11
No Yes Trypanosoma cruzi strain CL Brener   11 11
No Yes Trypanosoma congolense 2.4   9 9
No Yes Trypanosoma brucei gambiense v4.1   13 13
No Yes Trypanosoma brucei TREU927 v4.1   10 10
No Yes Ectocarpus siliculosus   21 21
No Yes Aureococcus anophagefferens   14 14
No Yes Albugo laibachii 22   11 11
No Yes Pythium iwayamai DAOM BR242034 22   19 19
No Yes Pythium arrhenomanes ATCC 12531 22   22 22
No Yes Pythium ultimum v1.7-2   20 20
No Yes Pythium aphanidermatum DAOM BR444 22   22 22
No Yes Pythium irregulare DAOM BR486 22   28 28
No Yes Pythium vexans DAOM BR484 22   24 24
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 25 25
No Yes Phytophthora sojae 1.1   28 28
No Yes Phytophthora infestans T30-4   31 31
No Yes Phytophthora capsici   22 22
No Yes Hyaloperonospora arabidopsidis 22   14 14
No Yes Phaeodactylum tricornutumCCAP 1055/1   17 17
No Yes Fragilariopsis cylindrus   48 47
No Yes Thalassiosira pseudonana CCMP1335   19 18
No Yes Perkinsus marinus ATCC 50983   6 6
No Yes Paramecium tetraurelia   10 10
No Yes Tetrahymena thermophila SB210 1   11 11
No Yes Ichthyophthirius multifiliis strain G5   3 3
No Yes Cryptosporidium muris   4 4
No Yes Cryptosporidium parvum Iowa II   1 1
No Yes Neospora caninum   7 7
No Yes Toxoplasma gondii VEG   8 8
No Yes Toxoplasma gondii ME49   7 7
No Yes Toxoplasma gondii GT1   6 6
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   3 3
No Yes Symbiodinium minutum clade B1 v1.2   29 29
No Yes Naegleria gruberi   272 272
No Yes Trichomonas vaginalis   2 2
No Yes Guillardia theta CCMP2712 v1.0   31 31
No Yes Emiliania huxleyi CCMP1516   133 133
No Yes Candidatus Amoebophilus asiaticus 5a2   15 15
No Yes Waddlia chondrophila WSU 86-1044   2 2
No Yes Candidatus Protochlamydia amoebophila UWE25   12 11
No Yes Parachlamydia acanthamoebae UV-7   26 26
No Yes Babela massiliensis   1 1
No Yes Burkholderia rhizoxinica HKI 454   9 9
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas albilineans GPE PC73   1 1
No Yes Coxiella burnetii Dugway 5J108-111   1 1
No Yes Legionella longbeachae NSW150   1 1
No Yes Legionella pneumophila str. Corby   2 2
No Yes Pseudomonas stutzeri A1501   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 127 127
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 43 43
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 35 35
No Yes Ascaris suum Victoria/Ghent Pig roundworm 37 37
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 112 111
No Yes Cryptococcus neoformans var. grubii H99   20 20
No Yes Cryptococcus neoformans B-3501A   20 20
No Yes Cryptococcus neoformans JEC21   16 16
No Yes Paracoccidioides brasiliensis Pb01   31 31
No Yes Paracoccidioides brasiliensis Pb03   34 34
No Yes Coccidioides posadasii str. Silveira   48 48
No Yes Coccidioides immitis RMSCC 3703   35 35
No Yes Coccidioides immitis RMSCC 2394   46 46
No Yes Coccidioides immitis H538.4   40 40
No Yes Ajellomyces dermatitidis ER-3   39 39
No Yes Histoplasma capsulatum H143   38 38
No Yes Histoplasma capsulatum H88   39 39
No Yes Histoplasma capsulatum G186AR   39 39
No Yes Aspergillus fumigatus A1163   46 46
No Yes Candida albicans WO-1   16 16
No Yes Saccharomyces cerevisiae UC5   8 8
No Yes Saccharomyces cerevisiae PW5   8 8
No Yes Saccharomyces cerevisiae FL100   5 5
No Yes Saccharomyces cerevisiae CLIB324   4 4
No Yes Saccharomyces cerevisiae CBS7960   7 7
No Yes Saccharomyces cerevisiae YJM269   8 8
No Yes Saccharomyces cerevisiae T7   9 9
No Yes Saccharomyces cerevisiae FostersB   9 9
No Yes Saccharomyces cerevisiae FostersO   7 7
No Yes Saccharomyces cerevisiae VL3   8 8
No Yes Saccharomyces cerevisiae Vin13   10 10
No Yes Saccharomyces cerevisiae LalvinQA23   8 8
No Yes Saccharomyces cerevisiae AWRI796   9 9
No Yes Saccharomyces cerevisiae Sigma1278b   10 10
No Yes Saccharomyces cerevisiae W303   10 10
No Yes Saccharomyces cerevisiae JAY291   10 10
No Yes Saccharomyces cerevisiae AWRI1631   3 3
No Yes Saccharomyces cerevisiae YPS163   2 2
No Yes Saccharomyces cerevisiae M22   5 5
No Yes Saccharomyces cerevisiae T73   2 2
No Yes Saccharomyces cerevisiae CLIB215   6 6
No Yes Saccharomyces cerevisiae Y10   2 2
No Yes Saccharomyces cerevisiae YJM789   11 11
No Yes Saccharomyces cerevisiae YJM789   11 11
No Yes Saccharomyces cerevisiae RM11-1a   11 11
No Yes Saccharomyces cerevisiae RM11-1a   11 11
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 10 10
No Yes Schizosaccharomyces pombe 972h-   12 12
No Yes Batrachochytrium dendrobatidis JEL423   28 28
No Yes Batrachochytrium dendrobatidis JAM81   25 25
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 297 285
No Yes Hordeum vulgare 22 Domesticated barley 641 639
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 822 801
No Yes Trypanosoma brucei Lister 427 v4.1   11 11
No Yes Neospora caninum Nc-Liverpool 6.2   7 7
No Yes Plasmodium falciparum HB3   1 1
No Yes Plasmodium falciparum Dd2   1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum PSI07   3 3
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Xanthomonas oryzae pv. oryzicola BLS256   1 1
No Yes Coxiella burnetii CbuG_Q212   1 1
No Yes Coxiella burnetii RSA 331   1 1
No Yes Coxiella burnetii RSA 493   1 1
No Yes Legionella pneumophila str. Paris   4 4
No Yes Legionella pneumophila str. Lens   3 3
No Yes Legionella pneumophila subsp. pneumophila LPE509   4 4
No Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay   4 4
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   4 4
No Yes Legionella pneumophila subsp. pneumophila   4 4
No Yes Legionella pneumophila subsp. pneumophila   3 3
No Yes Legionella pneumophila subsp. pneumophila ATCC 43290   4 4
No Yes Legionella pneumophila 2300/99 Alcoy   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 200 200
No Yes Homo sapiens (NCBI version) Human 102 102
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 77 77
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 38 38
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 29 28
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 27 27
No Yes Moniliophthora perniciosa FA553 (Genome survey)   32 32
No Yes Encephalitozoon cuniculi (endoparasite)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 20 20
No Yes Lotus japonicus (Early assembly)   463 461
No Yes Malus x domestica (Duplicate) Apple 650 633
No Yes Ricinus communis (Early assembly) Castor bean 194 194
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   446 442
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 330 324
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 335 329
No Yes Phoenix dactylifera (Early draft) Date palm 54 54
No Yes Homo sapiens 69_37 Human 68 68
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 59 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 60 60
No Yes Pongo abelii 69_2 Sumatran orangutan 60 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 57 57
No Yes Macaca mulatta 69_1 Rhesus monkey 58 58
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 58 58
No Yes Otolemur garnettii 69_3 Small-eared galago 64 64
No Yes Microcebus murinus 69_1 Gray mouse lemur 39 39
No Yes Rattus norvegicus 69_3.4 Norway rat 67 67
No Yes Mus musculus 69_38 House mouse 78 78
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 48 48
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 51 51
No Yes Cavia porcellus 69_3 Domestic guinea pig 58 58
No Yes Oryctolagus cuniculus 69_2 Rabbit 54 54
No Yes Ochotona princeps 69 American pika 45 45
No Yes Tupaia belangeri 69 Northern tree shrew 29 29
No Yes Sus scrofa 69_10.2 Pig 56 56
No Yes Bos taurus 69_3.1 Cattle 67 67
No Yes Vicugna pacos 69_1 Alpaca 30 30
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 51 51
No Yes Mustela putorius furo 69_1.0 Domestic ferret 60 60
No Yes Ailuropoda melanoleuca 69_1 Giant panda 61 61
No Yes Canis familiaris 69_3.1 Dog 61 61
No Yes Felis catus 69 Domestic cat 39 39
No Yes Equus caballus 69_2 Horse 54 54
No Yes Myotis lucifugus 69_2.0 Little brown bat 117 117
No Yes Pteropus vampyrus 69_1 Large flying fox 57 57
No Yes Sorex araneus 69_1 European shrew 34 34
No Yes Erinaceus europaeus 69 Western European hedgehog 44 44
No Yes Procavia capensis 69_1 Cape rock hyrax 41 41
No Yes Loxodonta africana 69_3 African savanna elephant 56 56
No Yes Echinops telfairi 69 Small Madagascar hedgehog 35 35
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 38 38
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 26 26
No Yes Macropus eugenii 69_1.0 Tammar wallaby 34 34
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 48 48
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 63 63
No Yes Ornithorhynchus anatinus 69_5 Platypus 42 42
No Yes Petromyzon marinus 69_7.0 Sea lamprey 28 28
No Yes Meleagris gallopavo 69_2 Turkey 40 40
No Yes Gallus gallus 69_2 Chicken 49 49
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 48 48
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 52 52
No Yes Anolis carolinensis 69_2.0 Green anole 51 51
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 56 56
No Yes Latimeria chalumnae 69_1 Coelacanth 62 62
No Yes Gadus morhua 69_1 Atlantic cod 58 58
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 58 58
No Yes Takifugu rubripes 69_4 Torafugu 52 52
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 59 59
No Yes Oryzias latipes 69_1 Japanese medaka 55 55
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 72 72
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 68 68
No Yes Danio rerio 69_9 Zebrafish 75 75
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 19 19
No Yes Ciona intestinalis 69 Vase tunicate 30 30
No Yes Drosophila melanogaster 69_5 Fruit fly 26 26
No Yes Caenorhabditis elegans 69_215 Roundworm 102 102
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 11 11
No Yes Arabidopsis thaliana 10 Thale cress 640 640
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   4 4
No Yes Combined (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   5 5
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   13 13
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   95305 95035
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   9 9
No Yes Protozoadb 2010_08 (Protozoadb)   160 160
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   10 10
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   8999 8929
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   121867 120116
No Yes Global Ocean Sampling Expedition (GOS)   178 178
No Yes NCBI plasmid sequences (Plasmids)   7 7
No Yes NCBI viral sequences (Viral)   426 426
No Yes PDB chains (SCOP 1.75) (PDB)   6 6
No Yes Protein Data Bank (all PDB sequenc)   57 57
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   145 145
No Yes TargetDB (Targets)   273 273
No Yes UniProt viral sequences (Viral)   32 32

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]