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Bacterial photosystem II reaction centre, L and M subunits superfamily domain assignments
in
Oryza brachyantha 22

Assignment details

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Oryza brachyantha 22 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
OB01G28170.1   0.000000000366   1-51   Bacterial photosystem II reaction centre, L and M subunits  
OB08G16850.1   0.000000000732   1-50   Bacterial photosystem II reaction centre, L and M subunits  
 
Weak hits:
OB01G31150.1   0.0645   74-108   Bacterial photosystem II reaction centre, L and M subunits  
OB01G31680.1   0.00471   421-507   Bacterial photosystem II reaction centre, L and M subunits  
OB01G52730.1   0.0593   425-510   Bacterial photosystem II reaction centre, L and M subunits  
OB01G52740.1   0.0942   423-508   Bacterial photosystem II reaction centre, L and M subunits  

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Select to display   Genome       Domains   Proteins
No Yes ALL   35731 35731
No Yes Selaginella moellendorffii   4 4
No Yes Pinus taeda Loblolly pine 2 2
No Yes Eucalyptus grandis v201 Rose gum 3 3
No Yes Theobroma cacao B97-61/B2 v1 Cacao 2 2
No Yes Gossypium raimondii v221   14 14
No Yes Citrus clementina v165   3 3
No Yes Thellungiella halophila v173   4 4
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 5 5
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes Carica papaya Papaya 3 3
No Yes Medicago truncatula Barrel medic 16 16
No Yes Phaseolus vulgaris v186 French bean 3 3
No Yes Glycine max v109 Soybean 3 3
No Yes Cucumis sativus v122 Cucumber 3 3
No Yes Fragaria vesca Wild strawberry 5 5
No Yes Malus domestica v196 Apple 2 2
No Yes Linum usitatissimum v200 Flax 1 1
No Yes Manihot esculenta v147 Cassava 4 4
No Yes Populus trichocarpa v156 Black cottonwood 12 12
No Yes Vitis vinifera Wine grape 4 4
No Yes Mimulus guttatus v140 Spotted monkey flower 12 12
No Yes Solanum lycopersicum v.2.3 Tomato 18 18
No Yes Solanum tuberosum Potato 11 11
No Yes Actinidia chinensis Hongyang   7 7
No Yes Aquilegia coerulea v195   3 3
No Yes Triticum urartu 22   10 10
No Yes Triticum aestivum 22 Bread wheat 36 36
No Yes Aegilops tauschii 22   2 2
No Yes Brachypodium distachyon Stiff brome 6 6
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glaberrima African rice 8 8
No Yes Oryza punctata 22   2 2
No Yes Oryza nivara 22   2 2
No Yes Oryza brachyantha 22 Malo sina 2 2
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 8 8
No Yes Oryza sativa v193 Rice 8 8
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 4 4
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 4 4
No Yes Zea mays subsp. mays Maize 1 1
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 3 3
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 3 3
No Yes Amborella trichopoda 22   9 9
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Bathycoccus prasinos   2 2
No Yes Cyanidioschyzon merolae strain 10D 22   2 2
No Yes Cyanidioschyzon merolae   2 2
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Symbiodinium minutum clade B1 v1.2   1 1
No Yes Leptolyngbya sp. PCC 7376   5 5
No Yes Pseudanabaena sp. PCC 7367   3 3
No Yes Acaryochloris marina MBIC11017   6 6
No Yes Synechocystis sp. PCC 6803   5 5
No Yes Thermosynechococcus sp. NK55   5 5
No Yes Thermosynechococcus elongatus BP-1   5 5
No Yes Synechococcus sp. PCC 7502   3 3
No Yes Synechococcus sp. PCC 6312   4 4
No Yes Synechococcus sp. CC9311   6 6
No Yes Synechococcus elongatus PCC 7942   5 5
No Yes Prochlorococcus marinus str. MIT 9515   3 3
No Yes Microcoleus sp. PCC 7113   8 8
No Yes Trichodesmium erythraeum IMS101   4 4
No Yes Geitlerinema sp. PCC 7407   5 5
No Yes Cyanothece sp. PCC 8802   6 6
No Yes Gloeocapsa sp. PCC 7428   7 7
No Yes Halothece sp. PCC 7418   7 7
No Yes Microcystis aeruginosa NIES-843   7 7
No Yes Gloeobacter violaceus PCC 7421   6 6
No Yes Rivularia sp. PCC 7116   8 8
No Yes Calothrix sp. PCC 7507   9 9
No Yes Anabaena variabilis ATCC 29413   8 8
No Yes 'Nostoc azollae' 0708   4 4
No Yes Nostoc sp. PCC 7107   5 5
No Yes Nostoc punctiforme PCC 73102   7 7
No Yes Nostoc sp. PCC 7120   7 7
No Yes Nostoc sp. PCC 7524   7 7
No Yes Anabaena sp. 90   5 5
No Yes Roseiflexus sp. RS-1   2 1
No Yes Roseiflexus castenholzii DSM 13941   2 1
No Yes Chloroflexus sp. MS-G   2 2
No Yes Chloroflexus sp. Y-400-fl   2 2
No Yes Chloroflexus aggregans DSM 9485   2 2
No Yes Chloroflexus aurantiacus J-10-fl   2 2
No Yes Myxococcus fulvus HW-1   1 1
No Yes Rubrivivax gelatinosus IL144   2 2
No Yes Brevundimonas subvibrioides ATCC 15264   2 2
No Yes Dinoroseobacter shibae DFL 12   2 2
No Yes Jannaschia sp. CCS1   2 2
No Yes Roseobacter litoralis Och 149   2 2
No Yes Roseobacter denitrificans OCh 114   2 2
No Yes Rhodobacter sphaeroides ATCC 17029   2 2
No Yes Rhodobacter capsulatus SB 1003   2 2
No Yes Rhodospirillum photometricum DSM 122   2 2
No Yes Rhodospirillum centenum SW   2 2
No Yes Rhodospirillum rubrum F11   2 2
No Yes Acidiphilium multivorum AIU301   2 2
No Yes Methylobacterium chloromethanicum CM4   2 2
No Yes Methylobacterium extorquens AM1   2 2
No Yes Methylobacterium sp. 4-46   2 2
No Yes Methylobacterium populi BJ001   2 2
No Yes Methylobacterium radiotolerans JCM 2831   2 2
No Yes Methylocella silvestris BL2   2 2
No Yes Rhodomicrobium vannielii ATCC 17100   2 2
No Yes Rhodopseudomonas palustris BisA53   2 2
No Yes Bradyrhizobium sp. ORS 278   2 2
No Yes Halorhodospira halophila SL1   2 2
No Yes Allochromatium vinosum DSM 180   2 2
No Yes Thiocystis violascens DSM 198   2 2
No Yes Hordeum vulgare 22 Domesticated barley 2 2
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 2 2
No Yes Chroococcidiopsis thermalis PCC 7203   8 8
No Yes Chamaesiphon minutus PCC 6605   4 4
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   5 5
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   5 5
No Yes Synechocystis sp. PCC 6803 substr. GT-I   5 5
No Yes Synechocystis sp. PCC 6803   5 5
No Yes Cyanobium gracile PCC 6307   5 5
No Yes Dactylococcopsis salina PCC 8305   5 5
No Yes Synechococcus sp. JA-2-3B'a(2-13)   5 5
No Yes Synechococcus sp. JA-3-3Ab   6 6
No Yes Synechococcus sp. CC9902   6 6
No Yes Synechococcus sp. RCC307   6 6
No Yes Synechococcus sp. CC9605   5 5
No Yes Synechococcus sp. WH 8102   6 6
No Yes Synechococcus sp. WH 7803   6 6
No Yes Synechococcus sp. PCC 7002   5 5
No Yes Synechococcus elongatus PCC 6301   5 5
No Yes Prochlorococcus marinus str. NATL1A   4 4
No Yes Prochlorococcus marinus str. MIT 9301   2 2
No Yes Prochlorococcus marinus str. AS9601   3 3
No Yes Prochlorococcus marinus subsp. marinus str. CCMP1375   2 2
No Yes Prochlorococcus marinus subsp. pastoris str. CCMP1986   2 2
No Yes Prochlorococcus marinus str. MIT 9215   2 2
No Yes Prochlorococcus marinus str. MIT 9211   2 2
No Yes Prochlorococcus marinus str. MIT 9313   3 3
No Yes Prochlorococcus marinus str. MIT 9312   3 3
No Yes Prochlorococcus marinus str. MIT 9303   3 3
No Yes Prochlorococcus marinus str. NATL2A   4 4
No Yes Crinalium epipsammum PCC 9333   4 4
No Yes Oscillatoria nigro-viridis PCC 7112   9 9
No Yes Oscillatoria acuminata PCC 6304   7 7
No Yes Arthrospira platensis NIES-39   7 7
No Yes Cyanothece sp. PCC 7822   6 6
No Yes Cyanothece sp. PCC 7425   5 5
No Yes Cyanothece sp. PCC 7424   7 7
No Yes Cyanothece sp. ATCC 51142   7 7
No Yes Cyanothece sp. PCC 8801   6 6
No Yes Cyanobacterium aponinum PCC 10605   6 6
No Yes Cyanobacterium stanieri PCC 7202   4 4
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   7 7
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   9 9
No Yes Stanieria cyanosphaera PCC 7437   6 6
No Yes Calothrix parietina Calothrix sp. PCC 6303   6 6
No Yes Cylindrospermum stagnale PCC 7417   6 6
No Yes Anabaena cylindrica PCC 7122   7 7
No Yes Rhodobacter sphaeroides KD131   2 2
No Yes Rhodobacter sphaeroides ATCC 17025   2 2
No Yes Rhodobacter sphaeroides 2.4.1   2 2
No Yes Rhodospirillum rubrum ATCC 11170   2 2
No Yes Methylobacterium extorquens DM4   2 2
No Yes Methylobacterium extorquens PA1   2 2
No Yes Rhodopseudomonas palustris DX-1   2 2
No Yes Rhodopseudomonas palustris TIE-1   2 2
No Yes Rhodopseudomonas palustris HaA2   2 2
No Yes Rhodopseudomonas palustris BisB5   2 2
No Yes Rhodopseudomonas palustris BisB18   2 2
No Yes Rhodopseudomonas palustris CGA009   2 2
No Yes Bradyrhizobium sp. S23321   2 2
No Yes Bradyrhizobium sp. BTAi1   2 2
No Yes Bradyrhizobium oligotrophicum S58   2 2
No Yes Thioflavicoccus mobilis 8321   2 2
No Yes Lotus japonicus (Early assembly)   16 16
No Yes Malus x domestica (Duplicate) Apple 2 2
No Yes Ricinus communis (Early assembly) Castor bean 14 14
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   24 23
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 18 18
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 18 18
No Yes Guillardia theta (nucleomorph)   2 2
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes 1_Upper_euphotic (meta-genome)   7 7
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   24 24
No Yes 5_050719P (meta-genome)   16 15
No Yes 6_Upper_euphotic (meta-genome)   13 13
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   2 2
No Yes Crater Hills (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   8 8
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   16 16
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   10 10
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   2675 2669
No Yes Nymph Lake Bulk Water (meta-genome)   3 3
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   15 15
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   12 12
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   24 24
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   8 8
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   31 31
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   300 295
No Yes Uniprot 2018_03 genome   24454 24386
No Yes Global Ocean Sampling Expedition (GOS)   2554 2554
No Yes NCBI plasmid sequences (Plasmids)   7 7
No Yes NCBI viral sequences (Viral)   74 74
No Yes PDB chains (SCOP 1.75) (PDB)   38 38
No Yes Protein Data Bank (all PDB sequenc)   430 430
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1251 1251
No Yes UniProt viral sequences (Viral)   828 828

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