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RuBisCo LSMT C-terminal, substrate-binding domain superfamily domain assignments
in
Ostreococcus lucimarinus CCE9901

Assignment details

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Ostreococcus lucimarinus CCE9901 has 13 significant domains in 13 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Ost9901_3|25556|estExt_fgenesh1_pg.C_Chr_140238   0.0000000628   370-426   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|26435|eugene.1100010108   0.000000314   328-428   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|26584|eugene.1100010257   0.00000000327   368-430   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|27063|eugene.1300010085   0.0000209   242-252,306-444   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|27297|eugene.1400010012   0.0000000000116   264-353   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|27798|eugene.1500010120   0.0000000000432   207-301   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|30402|eugene.0300010078   0.00000144   304-333,363-387   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|30738|eugene.0300010414   0.00000000000706   292-389   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|30782|eugene.0300010458   0.00000000000000837   322-465   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|30822|eugene.0300010498   0.00000000000000759   194-353   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|32687|eugene.0700010284   0.0000366   292-340   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|40473|e_gwEuk.15.92.1   0.0000000000248   307-317,350-484   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|43434|e_gwEuk.20.132.1   4.45e-18   336-519   RuBisCo LSMT C-terminal, substrate-binding domain  
 
Weak hits:
jgi|Ost9901_3|14074|fgenesh1_pg.C_Chr_2000017   0.00183   388-436   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|15488|fgenesh1_pg.C_Chr_5000240   0.068   287-461   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|16391|fgenesh1_pg.C_Chr_8000078   0.000706   400-454   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|16466|fgenesh1_pg.C_Chr_8000153   0.0222   268-449   RuBisCo LSMT C-terminal, substrate-binding domain  
jgi|Ost9901_3|2778|gwEuk.9.155.1   0.00353   243-291   RuBisCo LSMT C-terminal, substrate-binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   5226 5226
No Yes Homo sapiens 76_38 Human 4 4
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 76_3.1 Western gorilla 2 2
No Yes Pongo abelii 76_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 2 2
No Yes Papio anubis 76 Olive baboon 2 2
No Yes Macaca mulatta 76_1 Rhesus monkey 4 4
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 5 5
No Yes Otolemur garnettii 76_3 Small-eared galago 2 2
No Yes Microcebus murinus 76_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 76_5.0 Norway rat 3 3
No Yes Mus musculus 76_38 House mouse 2 2
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 2 2
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 2 2
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 4 4
No Yes Cavia porcellus 76_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 76_2 Rabbit 2 2
No Yes Ochotona princeps 76 American pika 2 2
No Yes Tupaia belangeri 76 Northern tree shrew 2 2
No Yes Sus scrofa 76_10.2 Pig 3 3
No Yes Bos taurus 76_3.1 Cattle 2 2
No Yes Ovis aries 76_3.1 Sheep 2 2
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 76_1 Giant panda 2 2
No Yes Canis familiaris 76_3.1 Dog 2 2
No Yes Felis catus 76_6.2 Domestic cat 2 2
No Yes Equus caballus 76_2 Horse 3 3
No Yes Myotis lucifugus 76_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 76_1 Large flying fox 2 2
No Yes Erinaceus europaeus 76 Western European hedgehog 2 2
No Yes Procavia capensis 76_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 76_3 African savanna elephant 2 2
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 3 3
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 2 2
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 3 3
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 2 2
No Yes Ornithorhynchus anatinus 76_5 Platypus 3 3
No Yes Saccoglossus kowalevskii v3.0   3 3
No Yes Petromyzon marinus 76_7.0 Sea lamprey 2 2
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 2 2
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 2 2
No Yes Meleagris gallopavo 76_2 Turkey 2 2
No Yes Gallus gallus 76_4 Chicken 7 7
No Yes Anas platyrhynchos 76_1.0 Mallard 2 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 76_2.0 Green anole 2 2
No Yes Xenopus laevis African clawed frog 6 6
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 3 3
No Yes Latimeria chalumnae 76_1 Coelacanth 5 5
No Yes Lepisosteus oculatus 76 Spotted gar 3 3
No Yes Gadus morhua 76_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 76_4 Torafugu 4 4
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 2 2
No Yes Oryzias latipes 76_1 Japanese medaka 2 2
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 2 2
No Yes Poecilia formosa 76 Amazon molly 2 2
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 4 4
No Yes Astyanax mexicanus 76 Mexican tetra 2 2
No Yes Danio rerio 76_9 Zebrafish 3 3
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 76 Vase tunicate 1 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 1 1
No Yes Adineta vaga   1 1
No Yes Octopus bimaculoides 280   2 2
No Yes Lottia gigantea Owl limpet 2 2
No Yes Helobdella robusta   1 1
No Yes Capitella sp. I   1 1
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 1 1
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   1 1
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila yakuba 1.3   1 1
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   2 2
No Yes Drosophila melanogaster 76_5 Fruit fly 1 1
No Yes Drosophila erecta 1.3   1 1
No Yes Drosophila ananassae 1.3   1 1
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 1 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Anopheles darlingi 22 American malaria mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Daphnia pulex Common water flea 1 1
No Yes Strigamia maritima 22   1 1
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   1 1
No Yes Echinococcus granulosus   1 1
No Yes Schistosoma mansoni   1 1
No Yes Acropora digitifera v1.0   1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 2 2
No Yes Amphimedon queenslandica   1 1
No Yes Sphaeroforma arctica JP610   3 3
No Yes Capsaspora owczarzaki ATCC 30864   10 10
No Yes Malassezia globosa CBS 7966   2 2
No Yes Sporisorium reilianum 22   1 1
No Yes Ustilago maydis   1 1
No Yes Wallemia sebi v1.0   2 2
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   2 2
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   1 1
No Yes Rhodotorula graminis WP1 v1.0   2 2
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   2 2
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Piloderma croceum F 1598 v1.0   1 1
No Yes Serpula lacrymans var. lacrymans S7.9   1 1
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   1 1
No Yes Pisolithus microcarpus 441 v1.0   1 1
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Coprinopsis cinerea okayama7 130 v3   1 1
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 1 1
No Yes Galerina marginata v1.0   1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Laccaria bicolor S238N-H82   1 1
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Punctularia strigosozonata v1.0   1 1
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Postia placenta   2 2
No Yes Wolfiporia cocos MD-104 SS10 v1.0   1 1
No Yes Fomitopsis pinicolav1.0   1 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   1 1
No Yes Trametes versicolor v1.0   1 1
No Yes Dichomitus squalens   1 1
No Yes Tremella mesenterica Witches' butter 2 2
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Magnaporthe poae ATCC 64411 22   1 1
No Yes Magnaporthe grisea 70-15   2 2
No Yes Podospora anserina   2 2
No Yes Thielavia terrestris NRRL 8126   1 1
No Yes Chaetomium globosum CBS 148.51   2 2
No Yes Neurospora tetrasperma   2 2
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   2 2
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Verticillium albo-atrum VaMs.102   1 1
No Yes Verticillium dahliae VdLs.17   1 1
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Glomerella graminicola 22   1 1
No Yes Fusarium graminearum   1 1
No Yes Nectria haematococca mpVI   1 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   1 1
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 2
No Yes Trichoderma atroviride   2 2
No Yes Trichoderma citrinoviride v1.0   2 2
No Yes Trichoderma reesei 1.2   2 2
No Yes Trichoderma virens Gv29-8   2 2
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 2
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 2
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Blumeria graminis 22   1 1
No Yes Didymella exigua CBS 183.55 v1.0   2 2
No Yes Leptosphaeria maculans 22   2 2
No Yes Setosphaeria turcica v1.0   3 3
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   2 2
No Yes Cochliobolus victoriae FI3 v1.0   2 2
No Yes Cochliobolus carbonum 26-R-13 v1.0   2 2
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 2 2
No Yes Alternaria brassicicola   2 2
No Yes Cochliobolus lunatus m118 v2.0   2 2
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Stagonospora nodorum   2 2
No Yes Mycosphaerella graminicola IPO323   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Septoria musiva v1.0   2 2
No Yes Mycosphaerella fijiensis CIRAD86   1 1
No Yes Dothistroma septosporum   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Ajellomyces dermatitidis SLH14081   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Microsporum canis CBS 113480   2 2
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Uncinocarpus reesii 1704   2 2
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus fumigatus Af293   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus nidulans FGSC A4   1 1
No Yes Aspergillus sydowii v1.0   1 1
No Yes Aspergillus versicolor v1.0   1 1
No Yes Aspergillus glaucus   1 1
No Yes Aspergillus zonatus v1.0   1 1
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Aspergillus clavatus NRRL 1   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Wickerhamomyces anomalus   1 1
No Yes Catenaria anguillulae PL171 v1.0   2 2
No Yes Allomyces macrogynus ATCC 38327   3 3
No Yes Mortierella verticillata NRRL 6337   1 1
No Yes Phycomyces blakesleeanus   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Mucor circinelloides   3 3
No Yes Rhizomucor miehei CAU432   1 1
No Yes Spizellomyces punctatus DAOM BR117   2 2
No Yes Dictyostelium discoideum   4 4
No Yes Dictyostelium purpureum   6 6
No Yes Selaginella moellendorffii   17 17
No Yes Pinus taeda Loblolly pine 3 3
No Yes Picea abies Norway spruce 3 3
No Yes Eucalyptus grandis v201 Rose gum 22 22
No Yes Theobroma cacao B97-61/B2 v1 Cacao 7 7
No Yes Gossypium raimondii v221   37 37
No Yes Citrus clementina v165   9 9
No Yes Citrus sinensis v154 Sweet orange 24 24
No Yes Thellungiella halophila v173   7 7
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 10 10
No Yes Capsella rubella v183   5 5
No Yes Arabidopsis lyrata Lyrate rockcress 6 6
No Yes Arabidopsis thaliana 10 Thale cress 8 8
No Yes Carica papaya Papaya 9 9
No Yes Medicago truncatula Barrel medic 8 8
No Yes Phaseolus vulgaris v186 French bean 10 10
No Yes Glycine max v109 Soybean 13 13
No Yes Cucumis sativus v122 Cucumber 15 15
No Yes Fragaria vesca Wild strawberry 5 5
No Yes Malus domestica v196 Apple 12 12
No Yes Prunus persica v139 Peach 8 8
No Yes Linum usitatissimum v200 Flax 10 10
No Yes Manihot esculenta v147 Cassava 6 6
No Yes Populus trichocarpa v156 Black cottonwood 9 9
No Yes Vitis vinifera Wine grape 7 7
No Yes Mimulus guttatus v140 Spotted monkey flower 9 9
No Yes Solanum lycopersicum v.2.3 Tomato 6 6
No Yes Solanum tuberosum Potato 17 17
No Yes Actinidia chinensis Hongyang   7 7
No Yes Aquilegia coerulea v195   17 17
No Yes Triticum urartu 22   5 5
No Yes Triticum aestivum 22 Bread wheat 13 13
No Yes Aegilops tauschii 22   4 4
No Yes Brachypodium distachyon Stiff brome 7 7
No Yes Oryza barthii 22 African wild rice 12 12
No Yes Oryza meridionalis 22   8 8
No Yes Oryza glumaepatula 22   15 15
No Yes Oryza glaberrima African rice 5 5
No Yes Oryza punctata 22   10 10
No Yes Oryza nivara 22   10 10
No Yes Oryza brachyantha 22 Malo sina 6 6
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 6 6
No Yes Oryza sativa v193 Rice 6 6
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 8 8
No Yes Zea mays subsp. mays Maize 12 12
No Yes Zea mays v181 Maize 13 13
No Yes Sorghum bicolor Sorghum 6 6
No Yes Setaria italica v164 Foxtail millet 10 10
No Yes Panicum virgatum v202 Switchgrass 15 15
No Yes Musa balbisiana Balbis banana 6 6
No Yes Musa acuminata 22 Wild Malaysian banana 7 7
No Yes Amborella trichopoda 22   6 6
No Yes Physcomitrella patens   9 9
No Yes Ostreococcus sp. RCC809   12 12
No Yes Ostreococcus lucimarinus CCE9901   13 13
No Yes Ostreococcus tauri   12 12
No Yes Bathycoccus prasinos   7 7
No Yes Micromonas sp. RCC299   7 7
No Yes Micromonas pusilla CCMP1545 v3.0   11 11
No Yes Coccomyxa subellipsoidea sp. C-169 v2   11 11
No Yes Asterochloris sp. Cgr/DA1pho v1.0   8 8
No Yes Chlorella variabilis sp. NC64A   9 9
No Yes Chlorella vulgaris   8 8
No Yes Volvox carteri f. nagariensis   8 8
No Yes Volvox carteri v199   10 10
No Yes Chlamydomonas reinhardtii 4.0   7 7
No Yes Cyanidioschyzon merolae strain 10D 22   4 4
No Yes Cyanidioschyzon merolae   3 3
No Yes Porphyridium purpureum 02_2012   5 5
No Yes Thecamonas trahens ATCC 50062   4 4
No Yes Bigelowiella natans CCMP2755 22   14 14
No Yes Cyanophora paradoxa   6 6
No Yes Leishmania mexicana 2.4   1 1
No Yes Leishmania major strain Friedlin   1 1
No Yes Leishmania infantum JPCM5 2.4   1 1
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Ectocarpus siliculosus   6 6
No Yes Aureococcus anophagefferens   2 2
No Yes Albugo laibachii 22   3 3
No Yes Pythium iwayamai DAOM BR242034 22   3 3
No Yes Pythium arrhenomanes ATCC 12531 22   6 6
No Yes Pythium ultimum v1.7-2   5 5
No Yes Pythium aphanidermatum DAOM BR444 22   4 4
No Yes Pythium vexans DAOM BR484 22   5 5
No Yes Pythium irregulare DAOM BR486 22   5 5
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 6 6
No Yes Phytophthora sojae 1.1   7 7
No Yes Phytophthora infestans T30-4   7 7
No Yes Phytophthora capsici   6 6
No Yes Hyaloperonospora arabidopsidis 22   3 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   4 4
No Yes Fragilariopsis cylindrus   6 6
No Yes Thalassiosira pseudonana CCMP1335   4 4
No Yes Paramecium tetraurelia   15 15
No Yes Tetrahymena thermophila SB210 1   6 6
No Yes Ichthyophthirius multifiliis strain G5   5 5
No Yes Neospora caninum   1 1
No Yes Symbiodinium minutum clade B1 v1.2   12 12
No Yes Naegleria gruberi   2 2
No Yes Guillardia theta CCMP2712 v1.0   9 9
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 8 8
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 1 1
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 2 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Cryptococcus neoformans var. grubii H99   2 2
No Yes Cryptococcus neoformans B-3501A   2 2
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Ajellomyces dermatitidis ER-3   1 1
No Yes Histoplasma capsulatum H143   2 2
No Yes Histoplasma capsulatum H88   2 2
No Yes Histoplasma capsulatum G186AR   2 2
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Batrachochytrium dendrobatidis JEL423   3 3
No Yes Batrachochytrium dendrobatidis JAM81   2 2
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 7 7
No Yes Hordeum vulgare 22 Domesticated barley 8 8
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 6 6
No Yes Neospora caninum Nc-Liverpool 6.2   1 1
No Yes Homo sapiens (NCBI version) Human 3 3
No Yes Homo sapiens 75_37 (old version GRC) Human 4 4
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 2 2
No Yes Heliconius numata (Incomplete)   1 1
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   4 4
No Yes Malus x domestica (Duplicate) Apple 12 12
No Yes Ricinus communis (Early assembly) Castor bean 7 7
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   9 9
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 6 6
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 6 6
No Yes Phoenix dactylifera (Early draft) Date palm 4 4
No Yes Homo sapiens 69_37 Human 2 2
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 69_3.1 Western gorilla 2 2
No Yes Pongo abelii 69_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 2 2
No Yes Macaca mulatta 69_1 Rhesus monkey 2 2
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 2 2
No Yes Otolemur garnettii 69_3 Small-eared galago 2 2
No Yes Microcebus murinus 69_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 69_3.4 Norway rat 3 3
No Yes Mus musculus 69_38 House mouse 2 2
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 2 2
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 2 2
No Yes Cavia porcellus 69_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 69_2 Rabbit 2 2
No Yes Ochotona princeps 69 American pika 2 2
No Yes Tupaia belangeri 69 Northern tree shrew 2 2
No Yes Sus scrofa 69_10.2 Pig 3 3
No Yes Bos taurus 69_3.1 Cattle 2 2
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 69_1 Giant panda 2 2
No Yes Canis familiaris 69_3.1 Dog 2 2
No Yes Felis catus 69 Domestic cat 2 1
No Yes Equus caballus 69_2 Horse 2 2
No Yes Myotis lucifugus 69_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 69_1 Large flying fox 2 2
No Yes Erinaceus europaeus 69 Western European hedgehog 2 2
No Yes Procavia capensis 69_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 69_3 African savanna elephant 2 2
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 1 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 2 2
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 2 2
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 2 2
No Yes Ornithorhynchus anatinus 69_5 Platypus 3 3
No Yes Petromyzon marinus 69_7.0 Sea lamprey 2 2
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 2 2
No Yes Meleagris gallopavo 69_2 Turkey 2 2
No Yes Gallus gallus 69_2 Chicken 2 2
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 69_2.0 Green anole 2 2
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 69_1 Coelacanth 3 3
No Yes Gadus morhua 69_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 2 2
No Yes Oryzias latipes 69_1 Japanese medaka 1 1
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 2 2
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 2 2
No Yes Danio rerio 69_9 Zebrafish 2 2
No Yes Ciona intestinalis 69 Vase tunicate 1 1
No Yes Drosophila melanogaster 69_5 Fruit fly 1 1
No Yes Arabidopsis thaliana 10 Thale cress 6 6
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   6 6
No Yes STRING v9.0.5 (STRING)   220 219
No Yes Uniprot 2017_06 genome   2478 2470
No Yes Global Ocean Sampling Expedition (GOS)   8 8
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   26 26
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   69 69
No Yes TargetDB (Targets)   6 6

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