SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Family 10 polysaccharide lyase family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1gxmA   7.32e-94   0.0000000000119   24-326   1gxm A:  
1gxoA   3.15e-92   0.0000000000128   24-326   1gxm A:  
1r76A   1.46e-100   0.00000000000024   10-406   1r76 A:  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a Family 10 polysaccharide lyase domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   2096 2096
No Yes Clostridium cellulolyticum H10   1 1
No Yes Ruminococcus albus 7   1 1
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes Clostridium sp. BNL1100   1 1
No Yes Clostridium cellulovorans 743B   2 2
No Yes Paenibacillus mucilaginosus 3016   1 1
No Yes Paenibacillus polymyxa M1   1 1
No Yes Bacillus clausii KSM-K16   1 1
No Yes Melioribacter roseus P3M   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Prevotella ruminicola 23   1 1
No Yes Bacteroides salanitronis DSM 18170   2 2
No Yes Bacteroides vulgatus ATCC 8482   1 1
No Yes Bacteroides thetaiotaomicron VPI-5482   1 1
No Yes Pedobacter heparinus DSM 2366   1 1
No Yes Sphingobacterium sp. 21   1 1
No Yes Flavobacteriaceae bacterium 3519-10   1 1
No Yes Flavobacterium branchiophilum FL-15   1 1
No Yes Flavobacterium johnsoniae UW101   2 2
No Yes Fibrobacter succinogenes subsp. succinogenes S85   1 1
No Yes Planctomyces brasiliensis DSM 5305   1 1
No Yes Planctomyces limnophilus DSM 3776   1 1
No Yes Rhodopirellula baltica SH 1   1 1
No Yes Opitutus terrae PB90-1   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Granulicella tundricola MP5ACTX9   1 1
No Yes Granulicella mallensis MP5ACTX8   2 2
No Yes Asticcacaulis excentricus CB 48   3 3
No Yes Brevundimonas subvibrioides ATCC 15264   1 1
No Yes Hirschia baltica ATCC 49814   1 1
No Yes Saccharophagus degradans 2-40   2 2
No Yes Teredinibacter turnerae T7901   1 1
No Yes Cellvibrio japonicus Ueda107   3 3
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Dickeya zeae Ech1591   1 1
No Yes Paenibacillus mucilaginosus KNP414   1 1
No Yes Paenibacillus mucilaginosus K02   1 1
No Yes Paenibacillus polymyxa CR1   1 1
No Yes Paenibacillus polymyxa SC2   1 1
No Yes Paenibacillus polymyxa E681   1 1
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Bacteroides xylanisolvens XB1A   1 1
No Yes Fibrobacter succinogenes subsp. succinogenes S85   1 1
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   6 6
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   990 990
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   23 23
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   879 879
No Yes Global Ocean Sampling Expedition (GOS)   9 9
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   5 5
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   15 15

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]