SUPERFAMILY HMM library and genome assignments server
New 1.73 HMM library and genome assignments

Genome names, identifiers and phylogenetic trees

Create custom lists of genome identifiers or phylogenetic trees.

Custom lists of genomes, or groups of genomes, can be created using the check boxes and/or taxon links below. These lists of genomes can then be used to plot phylogenetic trees on this page, or to compare genomes on other pages. Genome combinations, or specific clades, can be displayed as if individual trees had been produced.

Identifier To Genome Name Search:
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Select a List of Genome Identifiers

Build a list of comma separated genome identifiers using the checkboxes by each genome entry.

These are the 2-letter genome identifiers used by the SUPERFAMILY database. Some of the identifiers have a relation to the species name, but many do not. There are enough 2-letter identifiers for the forseable future (3844 including numbers and case sensitivity), but it is already impossible to make all 2-letter identifiers look like the species name.

Select Code Name Species Genus Family Order Class Phylum Kingdom Superkingdom
hsHomo sapiens 49_36k (all transcripts)
xpPan troglodytes 49_21h (all transcripts)
ofPongo pygmaeus 49_1 (all transcripts)
ruMacaca mulatta 49_10h (all transcripts)
obOtolemur garnettii 49_1c (all transcripts)
ioMicrocebus murinus 49_1 (all transcripts)
rnRattus norvegicus 49_34s (all transcripts)
mmMus musculus 49_37b (all transcripts)
gbSpermophilus tridecemlineatus 49_1e (all transcripts)
guCavia porcellus 49_1c (all transcripts)
okOryctolagus cuniculus 49_1f (all transcripts)
oqOchotona princeps 49_1 (all transcripts)
tzTupaia belangeri 49_1d (all transcripts)
bvBos taurus 49_3f (all transcripts)
dgCanis familiaris 49_2g (all transcripts)
feFelis catus 49_1c (all transcripts)
eqEquus caballus 49_2 (all transcripts)
luMyotis lucifugus 49_1e (all transcripts)
xrSorex araneus 49_1c (all transcripts)
ekErinaceus europaeus 49_1c (all transcripts)
lkLoxodonta africana 49_1d (all transcripts)
eeEchinops telfairi 49_1e (all transcripts)
d5Dasypus novemcinctus 49_1f (all transcripts)
opMonodelphis domestica 49_5d (all transcripts)
ohOrnithorhynchus anatinus 49_1f (all transcripts)
ggGallus gallus 49_2g (all transcripts)
xlXenopus laevis
xnXenopus tropicalis 49_41i (all transcripts)
daDanio rerio 49_7c (all transcripts)
gcGasterosteus aculeatus 49_1f (all transcripts)
olOryzias latipes 49_1e (all transcripts)
tnTetraodon nigroviridis 49_1k (all transcripts)
toTakifugu rubripes 49_4i (all transcripts)
bfBranchiostoma floridae 1.0
c0Ciona savignyi 49_2f (all transcripts)
isCiona intestinalis 49_2i (all transcripts)
tuStrongylocentrotus purpuratus
hxHelobdella robusta
i1Capitella sp. I
omBombyx mori
nzNasonia vitripennis
aiApis mellifera 37.2d (all transcripts)
gdDrosophila grimshawi 1.2
gwDrosophila willistoni 1.2
doDrosophila pseudoobscura 2.2
dqDrosophila persimilis 1.2
dyDrosophila yakuba 1.2
dwDrosophila simulans 1.2
dzDrosophila sechellia 1.2
ddDrosophila melanogaster Ensembl 49_54 (all transcripts)
geDrosophila erecta 1.2
dkDrosophila ananassae 1.2
duDrosophila virilis 1.1
dxDrosophila mojavensis 1.2
axAedes aegypti 49_1b (all transcripts)
ieCulex pipiens quinquefasciatus
agAnopheles gambiae 49_3j (all transcripts)
tjTribolium castaneum 3.0
d7Daphnia pulex
gyLottia gigantea
r0Brugia malayi
clCaenorhabditis elegans Ensembl 49_180a (all transcripts)
cwCaenorhabditis briggsae 2
nwNematostella vectensis 1.0
rqTrichoplax adhaerens
ovMonosiga brevicollis
gzMalassezia globosa CBS 7966
umUstilago maydis 1 r2
p4Puccinia graminis f. sp. tritici CRL 75-36-700-3
yuSporobolomyces roseus
orCoprinopsis cinerea okayama7 130
loLaccaria bicolor
fcPhanerochaete chrysosporium 2.1
iaPostia placenta
cfCryptococcus neoformans JEC21
o9Schizosaccharomyces octosporus yFS286
hjSchizosaccharomyces japonicus yFS275
poSchizosaccharomyces pombe
nqPodospora anserina
hgChaetomium globosum CBS 148.51
nsNeurospora crassa 7
foFusarium oxysporum f. sp. lycopersici 4286
nxNectria haematococca mpVI
fvFusarium verticillioides 7600
fgFusarium graminearum
wtTrichoderma atroviride
reTrichoderma reesei 1.2
njTrichoderma virens
grMagnaporthe grisea 7 r2.3
vdVerticillium dahliae VdLs.17
veVerticillium albo-atrum VaMs.102
b7Botrytis cinerea B05.10
lzSclerotinia sclerotiorum
hkHistoplasma capsulatum class NAmI strain WU24
i6Coccidioides posadasii RMSCC 3488
imCoccidioides immitis RS
urUncinocarpus reesii 1704
nhNeosartorya fischeri NRRL 181
giAspergillus terreus NIH2624
aoAspergillus fumigatus Af293
a8Aspergillus oryzae RIB40
a5Aspergillus niger ATCC 1015
gqAspergillus flavus NRRL3357
a7Aspergillus clavatus NRRL 1
anAspergillus nidulans 1 r3.1
t4Pyrenophora tritici-repentis
wcCochliobolus heterostrophus