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Genome Names, Identifiers and Phylogenetic Trees

Create custom lists of genome identifiers or phylogenetic trees.

Custom lists of genomes, or groups of genomes, can be created using the check boxes and/or taxon links below. These lists of genomes can then be used to plot phylogenetic trees on this page, or to compare genomes on other pages. Genome combinations, or specific clades, can be displayed as if individual trees had been produced.

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Identifier To Genome Name Search: Enter a genome identifier to find the full name:
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Build a list of comma separated genome identifiers using the checkboxes by each genome entry.

The values in the 'Code' column are the 2-letter genome identifiers used by the SUPERFAMILY database. Some of the identifiers have a relation to the species name, but many do not.

Code	Name	Genus	Family	Order	Class	Phylum	Kingdom	Superkingdom
hs	Homo sapiens 49_36k (all transcripts)	Homo	Hominidae	Primates	Mammalia	Chordata	Metazoa	Eukaryota
xp	Pan troglodytes 49_21h (all transcripts)	Pan	Hominidae	Primates	Mammalia	Chordata	Metazoa	Eukaryota
gx	Gorilla gorilla 52_1 (all transcripts)	Gorilla	Hominidae	Primates	Mammalia	Chordata	Metazoa	Eukaryota
of	Pongo pygmaeus 49_1 (all transcripts)	Pongo	Hominidae	Primates	Mammalia	Chordata	Metazoa	Eukaryota
ru	Macaca mulatta 49_10h (all transcripts)	Macaca	Cercopithecidae	Primates	Mammalia	Chordata	Metazoa	Eukaryota
CJ	Callithrix jacchus 56_3 (all transcripts)	Callithrix	Cebidae	Primates	Mammalia	Chordata	Metazoa	Eukaryota
ob	Otolemur garnettii 49_1c (all transcripts)	Otolemur	Galagidae	Primates	Mammalia	Chordata	Metazoa	Eukaryota
io	Microcebus murinus 49_1 (all transcripts)	Microcebus	Cheirogaleidae	Primates	Mammalia	Chordata	Metazoa	Eukaryota
ih	Tarsius syrichta 51_1 (all transcripts)	Tarsius	Tarsiidae	Primates	Mammalia	Chordata	Metazoa	Eukaryota
rn	Rattus norvegicus 49_34s (all transcripts)	Rattus	Muridae	Rodentia	Mammalia	Chordata	Metazoa	Eukaryota
mm	Mus musculus 49_37b (all transcripts)	Mus	Muridae	Rodentia	Mammalia	Chordata	Metazoa	Eukaryota
gb	Spermophilus tridecemlineatus 49_1e (all transcripts)	Spermophilus	Sciuridae	Rodentia	Mammalia	Chordata	Metazoa	Eukaryota
in	Dipodomys ordii 51_1 (all transcripts)	Dipodomys	Heteromyidae	Rodentia	Mammalia	Chordata	Metazoa	Eukaryota
gu	Cavia porcellus 51_3 (all transcripts)	Cavia	Caviidae	Rodentia	Mammalia	Chordata	Metazoa	Eukaryota
ok	Oryctolagus cuniculus 49_1f (all transcripts)	Oryctolagus	Leporidae	Lagomorpha	Mammalia	Chordata	Metazoa	Eukaryota
oq	Ochotona princeps 49_1 (all transcripts)	Ochotona	Ochotonidae	Lagomorpha	Mammalia	Chordata	Metazoa	Eukaryota
tz	Tupaia belangeri 49_1d (all transcripts)	Tupaia	Tupaiidae	Scandentia	Mammalia	Chordata	Metazoa	Eukaryota
SS	Sus scrofa 56_9 (all transcripts)	Sus	Suidae		Mammalia	Chordata	Metazoa	Eukaryota
bv	Bos taurus 49_3f (all transcripts)	Bos	Bovidae		Mammalia	Chordata	Metazoa	Eukaryota
vu	Vicugna pacos 51_1 (all transcripts)	Lama	Camelidae		Mammalia	Chordata	Metazoa	Eukaryota
ut	Tursiops truncatus 51_1 (all transcripts)	Tursiops	Delphinidae	Cetacea	Mammalia	Chordata	Metazoa	Eukaryota
dg	Canis familiaris 49_2g (all transcripts)	Canis	Canidae	Carnivora	Mammalia	Chordata	Metazoa	Eukaryota
fe	Felis catus 49_1c (all transcripts)	Felis	Felidae	Carnivora	Mammalia	Chordata	Metazoa	Eukaryota
eq	Equus caballus 49_2 (all transcripts)	Equus	Equidae	Perissodactyla	Mammalia	Chordata	Metazoa	Eukaryota
lu	Myotis lucifugus 49_1e (all transcripts)	Myotis	Vespertilionidae	Chiroptera	Mammalia	Chordata	Metazoa	Eukaryota
vr	Pteropus vampyrus 51_1 (all transcripts)	Pteropus	Pteropodidae	Chiroptera	Mammalia	Chordata	Metazoa	Eukaryota
xr	Sorex araneus 49_1c (all transcripts)	Sorex	Soricidae	Insectivora	Mammalia	Chordata	Metazoa	Eukaryota
ek	Erinaceus europaeus 49_1c (all transcripts)	Erinaceus	Erinaceidae	Insectivora	Mammalia	Chordata	Metazoa	Eukaryota
vn	Procavia capensis 51_1 (all transcripts)	Procavia	Procaviidae	Hyracoidea	Mammalia	Chordata	Metazoa	Eukaryota
lk	Loxodonta africana 49_1d (all transcripts)	Loxodonta	Elephantidae	Proboscidea	Mammalia	Chordata	Metazoa	Eukaryota
ee	Echinops telfairi 49_1e (all transcripts)	Echinops	Tenrecidae		Mammalia	Chordata	Metazoa	Eukaryota
d5	Dasypus novemcinctus 49_1f (all transcripts)	Dasypus	Dasypodidae	Xenarthra	Mammalia	Chordata	Metazoa	Eukaryota
mr	Macropus eugenii 55_1 (all transcripts)	Macropus	Macropodidae	Diprotodontia	Mammalia	Chordata	Metazoa	Eukaryota
op	Monodelphis domestica 49_5d (all transcripts)	Monodelphis	Didelphidae	Didelphimorphia	Mammalia	Chordata	Metazoa	Eukaryota
oh	Ornithorhynchus anatinus 49_1f (all transcripts)	Ornithorhynchus	Ornithorhynchidae	Monotremata	Mammalia	Chordata	Metazoa	Eukaryota
nk	Anolis carolinensis 55_1a (all transcripts)	Anolis	Iguanidae	Squamata		Chordata	Metazoa	Eukaryota
gg	Gallus gallus 49_2g (all transcripts)	Gallus	Phasianidae	Galliformes	Aves	Chordata	Metazoa	Eukaryota
xl	Xenopus laevis	Xenopus	Pipidae	Anura	Amphibia	Chordata	Metazoa	Eukaryota
xn	Xenopus tropicalis 49_41i (all transcripts)	Xenopus	Pipidae	Anura	Amphibia	Chordata	Metazoa	Eukaryota
da	Danio rerio 49_7c (all transcripts)	Danio	Cyprinidae	Cypriniformes	Actinopterygii	Chordata	Metazoa	Eukaryota
gc	Gasterosteus aculeatus 49_1f (all transcripts)	Gasterosteus	Gasterosteidae	Gasterosteiformes	Actinopterygii	Chordata	Metazoa	Eukaryota
ol	Oryzias latipes 49_1e (all transcripts)	Oryzias	Adrianichthyidae	Beloniformes	Actinopterygii	Chordata	Metazoa	Eukaryota
tn	Tetraodon nigroviridis 49_1k (all transcripts)	Tetraodon	Tetraodontidae	Tetraodontiformes	Actinopterygii	Chordata	Metazoa	Eukaryota
to	Takifugu rubripes 49_4i (all transcripts)	Takifugu	Tetraodontidae	Tetraodontiformes	Actinopterygii	Chordata	Metazoa	Eukaryota
bf	Branchiostoma floridae 1.0	Branchiostoma	Branchiostomidae			Chordata	Metazoa	Eukaryota
c0	Ciona savignyi 49_2f (all transcripts)	Ciona	Cionidae	Enterogona	Ascidiacea	Chordata	Metazoa	Eukaryota
is	Ciona intestinalis 49_2i (all transcripts)	Ciona	Cionidae	Enterogona	Ascidiacea	Chordata	Metazoa	Eukaryota
tu	Strongylocentrotus purpuratus	Strongylocentrotus	Strongylocentrotidae	Echinoida	Echinoidea	Echinodermata	Metazoa	Eukaryota
hx	Helobdella robusta	Helobdella	Glossiphoniidae	Rhynchobdellida	Hirudinida	Annelida	Metazoa	Eukaryota
i1	Capitella sp. I	Capitella	Capitellidae	Capitellida	Polychaeta	Annelida	Metazoa	Eukaryota
om	Bombyx mori	Bombyx	Bombycidae	Lepidoptera	Insecta	Arthropoda	Metazoa	Eukaryota
nz	Nasonia vitripennis	Nasonia	Pteromalidae	Hymenoptera	Insecta	Arthropoda	Metazoa	Eukaryota
ai	Apis mellifera 37.2d (all transcripts)	Apis	Apidae	Hymenoptera	Insecta	Arthropoda	Metazoa	Eukaryota
gd	Drosophila grimshawi 1.3	Drosophila	Drosophilidae	Diptera	Insecta	Arthropoda	Metazoa	Eukaryota
gw	Drosophila willistoni 1.3	Drosophila	Drosophilidae	Diptera	Insecta	Arthropoda	Metazoa	Eukaryota
do	Drosophila pseudoobscura 2.3	Drosophila	Drosophilidae	Diptera	Insecta	Arthropoda	Metazoa	Eukaryota
dq	Drosophila persimilis 1.3	Drosophila	Drosophilidae	Diptera	Insecta	Arthropoda	Metazoa	Eukaryota
dy	Drosophila yakuba 1.3	Drosophila	Drosophilidae	Diptera	Insecta	Arthropoda	Metazoa	Eukaryota
dw	Drosophila simulans 1.3	Drosophila	Drosophilidae	Diptera	Insecta	Arthropoda	Metazoa	Eukaryota
dz	Drosophila sechellia 1.3	Drosophila	Drosophilidae	Diptera	Insecta	Arthropoda	Metazoa	Eukaryota
dd	Drosophila melanogaster Ensembl 49_54 (all transcripts)	Drosophila	Drosophilidae	Diptera	Insecta	Arthropoda	Metazoa	Eukaryota
ge	Drosophila erecta 1.3	Drosophila	Drosophilidae	Diptera	Insecta	Arthropoda	Metazoa	Eukaryota
dk	Drosophila ananassae 1.3	Drosophila	Drosophilidae	Diptera	Insecta	Arthropoda	Metazoa	Eukaryota
du	Drosophila virilis 1.2	Drosophila	Drosophilidae	Diptera	Insecta	Arthropoda	Metazoa	Eukaryota
dx	Drosophila mojavensis 1.3	Drosophila	Drosophilidae	Diptera	Insecta	Arthropoda	Metazoa	Eukaryota
ax	Aedes aegypti 49_1b (all transcripts)	Aedes	Culicidae	Diptera	Insecta	Arthropoda	Metazoa	Eukaryota
ie	Culex pipiens quinquefasciatus	Culex	Culicidae	Diptera	Insecta	Arthropoda	Metazoa	Eukaryota
ag	Anopheles gambiae 49_3j (all transcripts)	Anopheles	Culicidae	Diptera	Insecta	Arthropoda	Metazoa	Eukaryota
tj	Tribolium castaneum 3.0	Tribolium	Tenebrionidae	Coleoptera	Insecta	Arthropoda	Metazoa	Eukaryota
qp	Acyrthosiphon pisum	Acyrthosiphon	Aphididae	Hemiptera	Insecta	Arthropoda	Metazoa	Eukaryota
d7	Daphnia pulex	Daphnia	Daphniidae	Diplostraca	Branchiopoda	Arthropoda	Metazoa	Eukaryota
gy	Lottia gigantea	Lottia	Lottiidae	Docoglossa	Gastropoda	Mollusca	Metazoa	Eukaryota
wp	Pristionchus pacificus	Pristionchus	Neodiplogasteridae	Diplogasterida	Chromadorea	Nematoda	Metazoa	Eukaryota
wm	Meloidogyne hapla	Meloidogyne	Meloidogynidae	Tylenchida	Chromadorea	Nematoda	Metazoa	Eukaryota
r0	Brugia malayi	Brugia	Onchocercidae	Spirurida	Chromadorea	Nematoda	Metazoa	Eukaryota
wj	Caenorhabditis japonica	Caenorhabditis	Rhabditidae	Rhabditida	Chromadorea	Nematoda	Metazoa	Eukaryota
wn	Caenorhabditis brenneri	Caenorhabditis	Rhabditidae	Rhabditida	Chromadorea	Nematoda	Metazoa	Eukaryota
wr	Caenorhabditis remanei	Caenorhabditis	Rhabditidae	Rhabditida	Chromadorea	Nematoda	Metazoa	Eukaryota
cl	Caenorhabditis elegans Ensembl 49_180a (all transcripts)	Caenorhabditis	Rhabditidae	Rhabditida	Chromadorea	Nematoda	Metazoa	Eukaryota
cw	Caenorhabditis briggsae 2	Caenorhabditis	Rhabditidae	Rhabditida	Chromadorea	Nematoda	Metazoa	Eukaryota
hz	Schistosoma mansoni	Schistosoma	Schistosomatidae	Strigeidida	Trematoda	Platyhelminthes	Metazoa	Eukaryota
nw	Nematostella vectensis 1.0	Nematostella	Edwardsiidae	Actiniaria	Anthozoa	Cnidaria	Metazoa	Eukaryota
qm	Hydra magnipapillata	Hydra	Hydridae	Hydroida	Hydrozoa	Cnidaria	Metazoa	Eukaryota
rq	Trichoplax adhaerens	Trichoplax				Placozoa	Metazoa	Eukaryota
PR	Proterospongia sp. ATCC 50818	Proterospongia	Codonosigidae	Choanoflagellida				Eukaryota
ov	Monosiga brevicollis	Monosiga	Codonosigidae	Choanoflagellida				Eukaryota
wz	Capsaspora owczarzaki ATCC 30864	Capsaspora			Ichthyosporea			Eukaryota
gz	Malassezia globosa CBS 7966	Malassezia		Malasseziales		Basidiomycota	Fungi	Eukaryota
um	Ustilago maydis	Ustilago	Ustilaginaceae	Ustilaginales	Ustilaginomycetes	Basidiomycota	Fungi	Eukaryota
p4	Puccinia graminis f. sp. tritici CRL 75-36-700-3	Puccinia	Pucciniaceae	Pucciniales		Basidiomycota	Fungi	Eukaryota
ql	Melampsora laricis-populina	Melampsora	Melampsoraceae	Pucciniales		Basidiomycota	Fungi	Eukaryota
yu	Sporobolomyces roseus IAM 13481	Sporobolomyces		Sporidiobolales		Basidiomycota	Fungi	Eukaryota
SL	Serpula lacrymans var. lacrymans S7.9	Serpula	Serpulaceae	Boletales	Agaricomycetes	Basidiomycota	Fungi	Eukaryota
or	Coprinopsis cinerea okayama7 130	Coprinopsis	Psathyrellaceae	Agaricales	Agaricomycetes	Basidiomycota	Fungi	Eukaryota
PO	Pleurotus ostreatus	Pleurotus	Pleurotaceae	Agaricales	Agaricomycetes	Basidiomycota	Fungi	Eukaryota
lo	Laccaria bicolor S238N-H82	Laccaria	Tricholomataceae	Agaricales	Agaricomycetes	Basidiomycota	Fungi	Eukaryota
zc	Schizophyllum commune	Schizophyllum	Schizophyllaceae	Agaricales	Agaricomycetes	Basidiomycota	Fungi	Eukaryota
qa	Heterobasidion annosum	Heterobasidion	Bondarzewiaceae	Russulales	Agaricomycetes	Basidiomycota	Fungi	Eukaryota
fc	Phanerochaete chrysosporium RP-78 2.1	Phanerochaete	Corticiaceae	Corticiales	Agaricomycetes	Basidiomycota	Fungi	Eukaryota
ia	Postia placenta	Postia	Coriolaceae	Polyporales	Agaricomycetes	Basidiomycota	Fungi	Eukaryota
lq	Tremella mesenterica	Tremella	Tremellaceae	Tremellales	Tremellomycetes	Basidiomycota	Fungi	Eukaryota
cf	Cryptococcus neoformans JEC21	Filobasidiella	Tremellaceae	Tremellales	Tremellomycetes	Basidiomycota	Fungi	Eukaryota
o9	Schizosaccharomyces octosporus yFS286	Schizosaccharomyces	Schizosaccharomycetaceae	Schizosaccharomycetales	Schizosaccharomycetes	Ascomycota	Fungi	Eukaryota
hj	Schizosaccharomyces japonicus yFS275	Schizosaccharomyces	Schizosaccharomycetaceae	Schizosaccharomycetales	Schizosaccharomycetes	Ascomycota	Fungi	Eukaryota
po	Schizosaccharomyces pombe	Schizosaccharomyces	Schizosaccharomycetaceae	Schizosaccharomycetales	Schizosaccharomycetes	Ascomycota	Fungi	Eukaryota
gr	Magnaporthe grisea 70-15	Magnaporthe	Magnaporthaceae	Magnaporthales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
nq	Podospora anserina	Podospora	Lasiosphaeriaceae	Sordariales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
ST	Sporotrichum thermophile ATCC 42464	Thielavia	Chaetomiaceae	Sordariales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
TT	Thielavia terrestris NRRL 8126	Thielavia	Chaetomiaceae	Sordariales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
hg	Chaetomium globosum CBS 148.51	Chaetomium	Chaetomiaceae	Sordariales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
n4	Neurospora tetrasperma	Neurospora	Sordariaceae	Sordariales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
n3	Neurospora discreta FGSC 8579	Neurospora	Sordariaceae	Sordariales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
ns	Neurospora crassa OR74A	Neurospora	Sordariaceae	Sordariales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
yh	Cryphonectria parasitica	Cryphonectria	Cryphonectriaceae	Diaporthales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
fo	Fusarium oxysporum f. sp. lycopersici 4286	Fusarium		Hypocreales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
nx	Nectria haematococca mpVI	Nectria	Nectriaceae	Hypocreales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
fv	Fusarium verticillioides 7600	Gibberella	Nectriaceae	Hypocreales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
fg	Fusarium graminearum	Gibberella	Nectriaceae	Hypocreales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
wt	Trichoderma atroviride	Trichoderma	Hypocreaceae	Hypocreales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
re	Trichoderma reesei 1.2	Hypocrea	Hypocreaceae	Hypocreales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
nj	Trichoderma virens Gv29-8	Hypocrea	Hypocreaceae	Hypocreales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
vd	Verticillium dahliae VdLs.17	Verticillium		Phyllachorales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
ve	Verticillium albo-atrum VaMs.102	Verticillium		Phyllachorales	Sordariomycetes	Ascomycota	Fungi	Eukaryota
b7	Botrytis cinerea B05.10	Botryotinia	Sclerotiniaceae	Helotiales	Leotiomycetes	Ascomycota	Fungi	Eukaryota
lz	Sclerotinia sclerotiorum	Sclerotinia	Sclerotiniaceae	Helotiales	Leotiomycetes	Ascomycota	Fungi	Eukaryota
j2	Ajellomyces dermatitidis SLH14081	Ajellomyces	Ajellomycetaceae	Onygenales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
hk	Histoplasma capsulatum class NAmI strain WU24	Ajellomyces	Ajellomycetaceae	Onygenales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
gp	Microsporum gypseum	Arthroderma	Arthrodermataceae	Onygenales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
qc	Microsporum canis CBS 113480	Microsporum	Arthrodermataceae	Onygenales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
o7	Trichophyton equinum CBS 127.97	Trichophyton	Arthrodermataceae	Onygenales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
TP	Trichophyton tonsurans CBS 112818	Trichophyton	Arthrodermataceae	Onygenales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
TR	Trichophyton rubrum CBS 118892	Trichophyton	Arthrodermataceae	Onygenales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
iv	Paracoccidioides brasiliensis Pb18	Paracoccidioides		Onygenales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
i6	Coccidioides posadasii RMSCC 3488	Coccidioides		Onygenales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
im	Coccidioides immitis RS	Coccidioides		Onygenales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
ur	Uncinocarpus reesii 1704	Uncinocarpus	Onygenaceae	Onygenales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
nh	Neosartorya fischeri NRRL 181	Neosartorya	Trichocomaceae	Eurotiales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
PC	Penicillium chrysogenum Wisconsin 54-1255	Penicillium	Trichocomaceae	Eurotiales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
PM	Penicillium marneffei ATCC 18224	Penicillium	Trichocomaceae	Eurotiales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
AC	Aspergillus carbonarius ITEM 5010	Aspergillus	Trichocomaceae	Eurotiales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
gi	Aspergillus terreus NIH2624	Aspergillus	Trichocomaceae	Eurotiales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
ao	Aspergillus fumigatus Af293	Aspergillus	Trichocomaceae	Eurotiales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
a8	Aspergillus oryzae RIB40	Aspergillus	Trichocomaceae	Eurotiales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
a5	Aspergillus niger ATCC 1015	Aspergillus	Trichocomaceae	Eurotiales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
gq	Aspergillus flavus NRRL3357	Aspergillus	Trichocomaceae	Eurotiales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
a7	Aspergillus clavatus NRRL 1	Aspergillus	Trichocomaceae	Eurotiales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
an	Aspergillus nidulans FGSC A4	Emericella	Trichocomaceae	Eurotiales	Eurotiomycetes	Ascomycota	Fungi	Eukaryota
l3	Alternaria brassicicola	Alternaria	Pleosporaceae	Pleosporales	Dothideomycetes	Ascomycota	Fungi	Eukaryota
t4	Pyrenophora tritici-repentis	Pyrenophora	Pleosporaceae	Pleosporales	Dothideomycetes	Ascomycota	Fungi	Eukaryota
wc	Cochliobolus heterostrophus	Cochliobolus	Pleosporaceae	Pleosporales	Dothideomycetes	Ascomycota	Fungi	Eukaryota
nd	Stagonospora nodorum	Phaeosphaeria	Phaeosphaeriaceae	Pleosporales	Dothideomycetes	Ascomycota	Fungi	Eukaryota
ym	Mycosphaerella fijiensis CIRAD86	Mycosphaerella	Mycosphaerellaceae	Capnodiales	Dothideomycetes	Ascomycota	Fungi	Eukaryota
yo	Mycosphaerella graminicola IPO323	Mycosphaerella	Mycosphaerellaceae	Capnodiales	Dothideomycetes	Ascomycota	Fungi	Eukaryota
t3	Candida tropicalis MYA-3404	Candida		Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
ik	Candida parapsilosis	Candida		Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
al	Candida albicans SC5314	Candida		Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
yl	Yarrowia lipolytica CLIB122	Yarrowia	Dipodascaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
iu	Candida lusitaniae ATCC 42720	Clavispora	Metschnikowiaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
vw	Vanderwaltozyma polyspora DSM 70294	Vanderwaltozyma	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
gl	Candida glabrata CBS138	Nakaseomyces	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
yv	Kluyveromyces thermotolerans CBS 6340	Lachancea	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
y4	Lachancea kluyveri	Lachancea	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
kw	Kluyveromyces waltii	Lachancea	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
ly	Lodderomyces elongisporus NRRL YB-4239	Lodderomyces	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
go	Ashbya gossypii ATCC 10895	Eremothecium	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
dh	Debaromyces hansenii	Debaryomyces	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
yz	Zygosaccharomyces rouxii	Zygosaccharomyces	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
y6	Saccharomyces mikatae MIT	Saccharomyces	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
y8	Saccharomyces paradoxus MIT	Saccharomyces	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
sc	Saccharomyces cerevisiae SGD	Saccharomyces	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
y1	Saccharomyces bayanus MIT	Saccharomyces	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
ng	Candida guilliermondii ATCC 6260	Pichia	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
ip	Pichia stipitis CBS 6054	Pichia	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
PP	Pichia pastoris GS115	Pichia	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
kl	Kluyveromyces lactis	Kluyveromyces	Saccharomycetaceae	Saccharomycetales	Saccharomycetes	Ascomycota	Fungi	Eukaryota
AM	Allomyces macrogynus ATCC 38327	Allomyces	Blastocladiaceae	Blastocladiales	Blastocladiomycetes	Blastocladiomycota	Fungi	Eukaryota
ry	Rhizopus oryzae RA 99-880	Rhizopus	Mucoraceae	Mucorales			Fungi	Eukaryota
hn	Phycomyces blakesleeanus	Phycomyces	Mucoraceae	Mucorales			Fungi	Eukaryota
ul	Mucor circinelloides	Mucor	Mucoraceae	Mucorales			Fungi	Eukaryota
eu	Encephalitozoon cuniculi	Encephalitozoon	Unikaryonidae			Microsporidia	Fungi	Eukaryota
zi	Spizellomyces punctatus DAOM BR117	Spizellomyces	Spizellomycetaceae	Spizellomycetales	Chytridiomycetes	Chytridiomycota	Fungi	Eukaryota
b8	Batrachochytrium dendrobatidis JEL423	Batrachochytrium		Chytridiales	Chytridiomycetes	Chytridiomycota	Fungi	Eukaryota
dt	Dictyostelium discoideum	Dictyostelium		Dictyosteliida				Eukaryota
yd	Dictyostelium purpureum	Dictyostelium		Dictyosteliida				Eukaryota
en	Entamoeba histolytica 1	Entamoeba						Eukaryota
vt	Vitis vinifera	Vitis	Vitaceae	Vitales		Streptophyta	Viridiplantae	Eukaryota
l4	Arabidopsis lyrata	Arabidopsis	Brassicaceae	Brassicales		Streptophyta	Viridiplantae	Eukaryota
at	Arabidopsis thaliana 9 (all transcripts)	Arabidopsis	Brassicaceae	Brassicales		Streptophyta	Viridiplantae	Eukaryota
r6	Carica papaya	Carica	Caricaceae	Brassicales		Streptophyta	Viridiplantae	Eukaryota
mw	Medicago truncatula	Medicago	Fabaceae	Fabales		Streptophyta	Viridiplantae	Eukaryota
pt	Populus trichocarpa 1.1	Populus	Salicaceae	Malpighiales		Streptophyta	Viridiplantae	Eukaryota
os	Oryza sativa ssp. japonica 5.0	Oryza	Poaceae	Poales	Liliopsida	Streptophyta	Viridiplantae	Eukaryota
ze	Zea mays subsp. mays	Zea	Poaceae	Poales	Liliopsida	Streptophyta	Viridiplantae	Eukaryota
oj	Sorghum bicolor	Sorghum	Poaceae	Poales	Liliopsida	Streptophyta	Viridiplantae	Eukaryota
gj	Selaginella moellendorffii	Selaginella	Selaginellaceae	Selaginellales	Isoetopsida	Streptophyta	Viridiplantae	Eukaryota
pw	Physcomitrella patens subsp. patens	Physcomitrella	Funariaceae	Funariales	Bryopsida	Streptophyta	Viridiplantae	Eukaryota
CX	Coccomyxa sp. C-169	Coccomyxa	Coccomyxaceae		Trebouxiophyceae	Chlorophyta	Viridiplantae	Eukaryota
h2	Chlorella sp. NC64A	Chlorella	Chlorellaceae	Chlorellales	Trebouxiophyceae	Chlorophyta	Viridiplantae	Eukaryota
vg	Chlorella vulgaris	Chlorella	Chlorellaceae	Chlorellales	Trebouxiophyceae	Chlorophyta	Viridiplantae	Eukaryota
vo	Volvox carteri f. nagariensis	Volvox	Volvocaceae	Chlamydomonadales	Chlorophyceae	Chlorophyta	Viridiplantae	Eukaryota
cy	Chlamydomonas reinhardtii 4.0	Chlamydomonas	Chlamydomonadaceae	Chlamydomonadales	Chlorophyceae	Chlorophyta	Viridiplantae	Eukaryota
o8	Ostreococcus sp. RCC809	Ostreococcus		Mamiellales	Prasinophyceae	Chlorophyta	Viridiplantae	Eukaryota
oz	Ostreococcus lucimarinus CCE9901	Ostreococcus		Mamiellales	Prasinophyceae	Chlorophyta	Viridiplantae	Eukaryota
ou	Ostreococcus tauri	Ostreococcus		Mamiellales	Prasinophyceae	Chlorophyta	Viridiplantae	Eukaryota
ij	Micromonas sp. RCC299	Micromonas		Mamiellales	Prasinophyceae	Chlorophyta	Viridiplantae	Eukaryota
iq	Micromonas pusilla CCMP1545	Micromonas		Mamiellales	Prasinophyceae	Chlorophyta	Viridiplantae	Eukaryota
ya	Cyanidioschyzon merolae	Cyanidioschyzon	Cyanidiaceae	Cyanidiales	Bangiophyceae			Eukaryota
gf	Giardia lamblia	Giardia	Hexamitidae					Eukaryota
uz	Trypanosoma cruzi strain CL Brener	Trypanosoma	Trypanosomatidae	Kinetoplastida				Eukaryota
tb	Trypanosoma brucei	Trypanosoma	Trypanosomatidae	Kinetoplastida				Eukaryota
em	Leishmania major strain Friedlin	Leishmania	Trypanosomatidae	Kinetoplastida				Eukaryota
lh	Leishmania infantum JPCM5	Leishmania	Trypanosomatidae	Kinetoplastida				Eukaryota
ib	Leishmania braziliensis MHOM/BR/75/M2904	Leishmania	Trypanosomatidae	Kinetoplastida				Eukaryota
a6	Aureococcus anophagefferens	Aureococcus			Pelagophyceae			Eukaryota
ra	Phytophthora ramorum 1.1	Phytophthora		Peronosporales				Eukaryota
sj	Phytophthora sojae 1.1	Phytophthora		Peronosporales				Eukaryota
iy	Phytophthora infestans T30-4	Phytophthora		Peronosporales				Eukaryota
yy	Phytophthora capsici	Phytophthora		Peronosporales				Eukaryota
hr	Phaeodactylum tricornutum	Phaeodactylum	Phaeodactylaceae	Naviculales	Bacillariophyceae	Bacillariophyta		Eukaryota
FC	Fragilariopsis cylindrus	Fragilariopsis	Bacillariaceae		Bacillariophyceae	Bacillariophyta		Eukaryota
tl	Thalassiosira pseudonana	Thalassiosira	Thalassiosiraceae		Coscinodiscophyceae	Bacillariophyta		Eukaryota
ir	Paramecium tetraurelia	Paramecium	Parameciidae	Peniculida	Oligohymenophorea			Eukaryota
hy	Tetrahymena thermophila SB210 1	Tetrahymena	Tetrahymenidae	Hymenostomatida	Oligohymenophorea			Eukaryota
o0	Babesia bovis T2Bo	Babesia	Babesiidae		Aconoidasida	Apicomplexa		Eukaryota
pv	Theileria parva	Theileria	Theileriidae		Aconoidasida	Apicomplexa		Eukaryota
nu	Theileria annulata	Theileria	Theileriidae		Aconoidasida	Apicomplexa		Eukaryota
pl	Plasmodium falciparum 3D7	Plasmodium		Haemosporida	Aconoidasida	Apicomplexa		Eukaryota
vx	Plasmodium vivax SaI-1	Plasmodium		Haemosporida	Aconoidasida	Apicomplexa		Eukaryota
fw	Plasmodium knowlesi strain H	Plasmodium		Haemosporida	Aconoidasida	Apicomplexa		Eukaryota
py	Plasmodium yoelii ssp. yoelii 1	Plasmodium		Haemosporida	Aconoidasida	Apicomplexa		Eukaryota
fy	Plasmodium chabaudi	Plasmodium		Haemosporida	Aconoidasida	Apicomplexa		Eukaryota
fb	Plasmodium berghei ANKA	Plasmodium		Haemosporida	Aconoidasida	Apicomplexa		Eukaryota
rm	Cryptosporidium hominis	Cryptosporidium	Cryptosporidiidae	Eucoccidiorida	Coccidia	Apicomplexa		Eukaryota
uc	Cryptosporidium muris	Cryptosporidium	Cryptosporidiidae	Eucoccidiorida	Coccidia	Apicomplexa		Eukaryota
cv	Cryptosporidium parvum Iowa II	Cryptosporidium	Cryptosporidiidae	Eucoccidiorida	Coccidia	Apicomplexa		Eukaryota
un	Neospora caninum	Neospora	Sarcocystidae	Eucoccidiorida	Coccidia	Apicomplexa		Eukaryota
ue	Toxoplasma gondii ME49	Toxoplasma	Sarcocystidae	Eucoccidiorida	Coccidia	Apicomplexa		Eukaryota
eb	Naegleria gruberi	Naegleria	Vahlkampfiidae	Schizopyrenida	Heterolobosea			Eukaryota
tx	Trichomonas vaginalis	Trichomonas	Trichomonadidae	Trichomonadida	Trichomonada			Eukaryota
gt	Guillardia theta	Guillardia	Geminigeraceae	Pyrenomonadales	Cryptophyta			Eukaryota
ex	Emiliania huxleyi CCMP1516	Emiliania	Noelaerhabdaceae	Isochrysidales				Eukaryota
9y	Candidatus Phytoplasma mali	Candidatus Phytoplasma	Acholeplasmataceae	Acholeplasmatales	Mollicutes	Tenericutes		Bacteria
ay	Aster yellows witches-broom phytoplasma AYWB	Candidatus Phytoplasma	Acholeplasmataceae	Acholeplasmatales	Mollicutes	Tenericutes		Bacteria
oy	Onion yellows phytoplasma OY-M	Candidatus Phytoplasma	Acholeplasmataceae	Acholeplasmatales	Mollicutes	Tenericutes		Bacteria
8b	Acholeplasma laidlawii PG-8A	Acholeplasma	Acholeplasmataceae	Acholeplasmatales	Mollicutes	Tenericutes		Bacteria
mf	Mesoplasma florum L1	Mesoplasma	Entomoplasmataceae	Entomoplasmatales	Mollicutes	Tenericutes		Bacteria
uu	Ureaplasma parvum ser. 3 ATCC 700970	Ureaplasma	Mycoplasmataceae	Mycoplasmatales	Mollicutes	Tenericutes		Bacteria
kf	Ureaplasma urealyticum ser. 10 ATCC 33699	Ureaplasma	Mycoplasmataceae	Mycoplasmatales	Mollicutes	Tenericutes		Bacteria
mi	Mycoplasma mycoides ssp. mycoides SC PG1	Mycoplasma	Mycoplasmataceae	Mycoplasmatales	Mollicutes	Tenericutes		Bacteria
yi	Mycoplasma capricolum ssp. capricolum ATCC 27343	Mycoplasma	Mycoplasmataceae	Mycoplasmatales	Mollicutes	Tenericutes		Bacteria
3O	Mycoplasma conjunctivae	Mycoplasma	Mycoplasmataceae	Mycoplasmatales	Mollicutes	Tenericutes		Bacteria
me	Mycoplasma penetrans HF-2	Mycoplasma	Mycoplasmataceae	Mycoplasmatales	Mollicutes	Tenericutes		Bacteria
m0	Mycoplasma mobile 163K	Mycoplasma	Mycoplasmataceae	Mycoplasmatales	Mollicutes	Tenericutes		Bacteria
9w	Mycoplasma arthritidis 158L3-1	Mycoplasma	Mycoplasmataceae	Mycoplasmatales	Mollicutes	Tenericutes		Bacteria
45	Mycoplasma agalactiae PG2	Mycoplasma	Mycoplasmataceae	Mycoplasmatales	Mollicutes	Tenericutes		Bacteria
yc	Mycoplasma synoviae 53	Mycoplasma	Mycoplasmataceae	Mycoplasmatales	Mollicutes	Tenericutes		Bacteria
mq	Mycoplasma pulmonis UAB CTIP	Mycoplasma	Mycoplasmataceae	Mycoplasmatales	Mollicutes	Tenericutes		Bacteria
mp	Mycoplasma pneumoniae M129	Mycoplasma	Mycoplasmataceae	Mycoplasmatales	Mollicutes	Tenericutes		Bacteria
x9	Mycoplasma hyopneumoniae 232	Mycoplasma	Mycoplasmataceae	Mycoplasmatales	Mollicutes	Tenericutes		Bacteria
mg	Mycoplasma genitalium G37	Mycoplasma	Mycoplasmataceae	Mycoplasmatales	Mollicutes	Tenericutes		Bacteria
my	Mycoplasma gallisepticum R	Mycoplasma	Mycoplasmataceae	Mycoplasmatales	Mollicutes	Tenericutes		Bacteria
3J	Brachyspira hyodysenteriae WA1	Brachyspira	Brachyspiraceae	Spirochaetales	Spirochaetes (class)	Spirochaetes		Bacteria
0k	Leptospira borgpetersenii ser. Hardjo-bovis L550	Leptospira	Leptospiraceae	Spirochaetales	Spirochaetes (class)	Spirochaetes		Bacteria
lr	Leptospira interrogans ser. Lai 56601	Leptospira	Leptospiraceae	Spirochaetales	Spirochaetes (class)	Spirochaetes		Bacteria
83	Leptospira biflexa ser. Patoc Patoc 1 (Paris)	Leptospira	Leptospiraceae	Spirochaetales	Spirochaetes (class)	Spirochaetes		Bacteria
tp	Treponema pallidum ssp. pallidum Nichols	Treponema	Spirochaetaceae	Spirochaetales	Spirochaetes (class)	Spirochaetes		Bacteria
td	Treponema denticola ATCC 35405	Treponema	Spirochaetaceae	Spirochaetales	Spirochaetes (class)	Spirochaetes		Bacteria
ga	Borrelia garinii PBi	Borrelia	Spirochaetaceae	Spirochaetales	Spirochaetes (class)	Spirochaetes		Bacteria
04	Borrelia afzelii PKo	Borrelia	Spirochaetaceae	Spirochaetales	Spirochaetes (class)	Spirochaetes		Bacteria
bb	Borrelia burgdorferi B31	Borrelia	Spirochaetaceae	Spirochaetales	Spirochaetes (class)	Spirochaetes		Bacteria
g7	Borrelia recurrentis A1	Borrelia	Spirochaetaceae	Spirochaetales	Spirochaetes (class)	Spirochaetes		Bacteria
f7	Borrelia duttonii Ly	Borrelia	Spirochaetaceae	Spirochaetales	Spirochaetes (class)	Spirochaetes		Bacteria
9c	Borrelia turicatae 91E135	Borrelia	Spirochaetaceae	Spirochaetales	Spirochaetes (class)	Spirochaetes		Bacteria
9u	Borrelia hermsii DAH	Borrelia	Spirochaetaceae	Spirochaetales	Spirochaetes (class)	Spirochaetes		Bacteria
pi	Rhodopirellula baltica SH 1	Rhodopirellula	Planctomycetaceae	Planctomycetales	Planctomycetacia	Planctomycetes		Bacteria
bl	Bifidobacterium longum NCC2705	Bifidobacterium	Bifidobacteriaceae	Bifidobacteriales	Actinobacteria (class)	Actinobacteria		Bacteria
g5	Bifidobacterium animalis ssp. lactis AD011	Bifidobacterium	Bifidobacteriaceae	Bifidobacteriales	Actinobacteria (class)	Actinobacteria		Bacteria
5g	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium	Bifidobacteriaceae	Bifidobacteriales	Actinobacteria (class)	Actinobacteria		Bacteria
58	Kineococcus radiotolerans SRS30216	Kineococcus	Kineosporiaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
4D	Catenulispora acidiphila DSM 44928	Catenulispora	Catenulisporaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
3q	Acidothermus cellulolyticus 11B	Acidothermus	Acidothermaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
2V	Nakamurella multipartita DSM 44233	Nakamurella	Nakamurellaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
fk	Frankia sp. CcI3	Frankia	Frankiaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
1b	Frankia alni ACN14a	Frankia	Frankiaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
tf	Thermobifida fusca YX	Thermobifida	Nocardiopsaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
7n	Streptomyces griseus ssp. griseus NBRC 13350	Streptomyces	Streptomycetaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
s9	Streptomyces avermitilis MA-4680	Streptomyces	Streptomycetaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
sf	Streptomyces coelicolor A3(2)	Streptomyces	Streptomycetaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
1Z	Actinosynnema mirum DSM 43827	Actinosynnema	Actinosynnemataceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
1Q	Saccharomonospora viridis DSM 43017	Saccharomonospora	Pseudonocardiaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
18	Saccharopolyspora erythraea NRRL 2338		Pelobacteraceae	Desulfuromonadales	Deltaproteobacteria	Proteobacteria		Bacteria
0j	Nocardioides sp. JS614	Nocardioides	Nocardioidaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
ac	Propionibacterium acnes KPA171202	Propionibacterium	Propionibacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
61	Salinispora arenicola CNS-205	Salinispora	Micromonosporaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
1h	Salinispora tropica CNB-440	Salinispora	Micromonosporaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
3r	Rhodococcus jostii RHA1	Rhodococcus	Nocardiaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
3E	Rhodococcus opacus B4	Rhodococcus	Nocardiaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
2T	Rhodococcus erythropolis PR4	Rhodococcus	Nocardiaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
nf	Nocardia farcinica IFM 10152	Nocardia	Nocardiaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
8c	Mycobacterium abscessus	Mycobacterium	Mycobacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
yb	Mycobacterium sp. MCS	Mycobacterium	Mycobacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
av	Mycobacterium avium ssp. paratuberculosis K-10	Mycobacterium	Mycobacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
28	Mycobacterium vanbaalenii PYR-1	Mycobacterium	Mycobacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
mb	Mycobacterium tuberculosis H37Rv	Mycobacterium	Mycobacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
mc	Mycobacterium bovis AF2122/97	Mycobacterium	Mycobacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
5o	Mycobacterium ulcerans Agy99	Mycobacterium	Mycobacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
4h	Mycobacterium gilvum PYR-GCK	Mycobacterium	Mycobacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
8u	Mycobacterium marinum M	Mycobacterium	Mycobacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
3e	Mycobacterium smegmatis MC2 155	Mycobacterium	Mycobacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
ml	Mycobacterium leprae TN	Mycobacterium	Mycobacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
4Z	Corynebacterium aurimucosum	Corynebacterium	Corynebacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
2H	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium	Corynebacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
co	Corynebacterium efficiens YS-314	Corynebacterium	Corynebacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
7h	Corynebacterium urealyticum DSM 7109	Corynebacterium	Corynebacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
jk	Corynebacterium jeikeium K411	Corynebacterium	Corynebacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
c3	Corynebacterium glutamicum ATCC 13032 Kitasato	Corynebacterium	Corynebacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
cd	Corynebacterium diphtheriae NCTC 13129	Corynebacterium	Corynebacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
tw	Tropheryma whipplei Twist	Tropheryma		Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
2G	Kytococcus sedentarius DSM 20547	Kytococcus	Dermacoccaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
5U	Beutenbergia cavernae DSM 12333	Beutenbergia	Beutenbergiaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
lx	Leifsonia xyli ssp. xyli CTCB07	Leifsonia	Microbacteriaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
32	Clavibacter michiganensis ssp. michiganensis NCPPB 382		Myxococcaceae	Myxococcales	Deltaproteobacteria	Proteobacteria		Bacteria
2X	Jonesia denitrificans DSM 20603	Jonesia	Jonesiaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
3G	Brachybacterium faecium DSM 4810	Brachybacterium	Dermabacteraceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
98	Kocuria rhizophila DC2201	Kocuria	Micrococcaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
1f	Arthrobacter sp. FB24	Arthrobacter	Micrococcaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
6E	Arthrobacter chlorophenolicus A6	Arthrobacter	Micrococcaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
56	Arthrobacter aurescens TC1	Sorangium	Polyangiaceae	Myxococcales	Deltaproteobacteria	Proteobacteria		Bacteria
7f	Renibacterium salmoninarum ATCC 33209	Renibacterium	Micrococcaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
2Q	Micrococcus luteus NCTC 2665	Micrococcus	Micrococcaceae	Actinomycetales	Actinobacteria (class)	Actinobacteria		Bacteria
2U	Cryptobacterium curtum DSM 15641	Cryptobacterium	Coriobacteriaceae	Coriobacteriales	Actinobacteria (class)	Actinobacteria		Bacteria
1O	Eggerthella lenta DSM 2243	Eggerthella	Coriobacteriaceae	Coriobacteriales	Actinobacteria (class)	Actinobacteria		Bacteria
4C	Slackia heliotrinireducens DSM 20476	Slackia	Coriobacteriaceae	Coriobacteriales	Actinobacteria (class)	Actinobacteria		Bacteria
0R	Atopobium parvulum DSM 20469	Atopobium	Coriobacteriaceae	Coriobacteriales	Actinobacteria (class)	Actinobacteria		Bacteria
rw	Rubrobacter xylanophilus DSM 9941	Rubrobacter	Rubrobacteraceae	Rubrobacterales	Actinobacteria (class)	Actinobacteria		Bacteria
3D	Acidimicrobium ferrooxidans DSM 10331	Acidimicrobium	Acidimicrobiaceae	Acidimicrobiales	Actinobacteria (class)	Actinobacteria		Bacteria
2E	Kosmotoga olearia TBF 19.5.1	Kosmotoga	Thermotogaceae	Thermotogales	Thermotogae (class)	Thermotogae		Bacteria
6y	Petrotoga mobilis SJ95	Petrotoga	Thermotogaceae	Thermotogales	Thermotogae (class)	Thermotogae		Bacteria
3l	Fervidobacterium nodosum Rt17-B1	Fervidobacterium	Thermotogaceae	Thermotogales	Thermotogae (class)	Thermotogae		Bacteria
2y	Thermosipho melanesiensis BI429	Thermosipho	Thermotogaceae	Thermotogales	Thermotogae (class)	Thermotogae		Bacteria
jt	Thermosipho africanus TCF52B	Thermosipho	Thermotogaceae	Thermotogales	Thermotogae (class)	Thermotogae		Bacteria
5v	Thermotoga lettingae TMO	Thermotoga	Thermotogaceae	Thermotogales	Thermotogae (class)	Thermotogae		Bacteria
92	Thermotoga sp. RQ2	Thermotoga	Thermotogaceae	Thermotogales	Thermotogae (class)	Thermotogae		Bacteria
0v	Thermotoga petrophila RKU-1	Thermotoga	Thermotogaceae	Thermotogales	Thermotogae (class)	Thermotogae		Bacteria
1J	Thermotoga neapolitana DSM 4359	Thermotoga	Thermotogaceae	Thermotogales	Thermotogae (class)	Thermotogae		Bacteria
tm	Thermotoga maritima MSB8	Thermotoga	Thermotogaceae	Thermotogales	Thermotogae (class)	Thermotogae		Bacteria
dl	Dehalococcoides sp. CBDB1	Dehalococcoides			Dehalococcoidetes	Chloroflexi		Bacteria
et	Dehalococcoides ethenogenes 195	Dehalococcoides			Dehalococcoidetes	Chloroflexi		Bacteria
4M	Thermomicrobium roseum DSM 5159	Thermomicrobium	Thermomicrobiaceae	Thermomicrobiales	Thermomicrobia (class)	Chloroflexi		Bacteria
5u	Herpetosiphon aurantiacus ATCC 23779	Herpetosiphon	Herpetosiphonaceae	Herpetosiphonales	Chloroflexi (class)	Chloroflexi		Bacteria
4a	Roseiflexus sp. RS-1	Roseiflexus	Chloroflexaceae	Chloroflexales	Chloroflexi (class)	Chloroflexi		Bacteria
77	Roseiflexus castenholzii DSM 13941	Roseiflexus	Chloroflexaceae	Chloroflexales	Chloroflexi (class)	Chloroflexi		Bacteria
2R	Chloroflexus sp. Y-400-fl	Chloroflexus	Chloroflexaceae	Chloroflexales	Chloroflexi (class)	Chloroflexi		Bacteria
jb	Chloroflexus aggregans DSM 9485	Chloroflexus	Chloroflexaceae	Chloroflexales	Chloroflexi (class)	Chloroflexi		Bacteria
6w	Chloroflexus aurantiacus J-10-fl	Chloroflexus	Chloroflexaceae	Chloroflexales	Chloroflexi (class)	Chloroflexi		Bacteria
96	Sulfurihydrogenibium sp. YO3AOP1	Sulfurihydrogenibium	Hydrogenothermaceae	Aquificales	Aquificae (class)	Aquificae		Bacteria
3A	Sulfurihydrogenibium azorense Az-Fu1	Sulfurihydrogenibium	Hydrogenothermaceae	Aquificales	Aquificae (class)	Aquificae		Bacteria
5N	Persephonella marina EX-H1	Persephonella	Hydrogenothermaceae	Aquificales	Aquificae (class)	Aquificae		Bacteria
e8	Hydrogenobaculum sp. Y04AAS1	Hydrogenobaculum	Aquificaceae	Aquificales	Aquificae (class)	Aquificae		Bacteria
aa	Aquifex aeolicus VF5	Aquifex	Aquificaceae	Aquificales	Aquificae (class)	Aquificae		Bacteria
6B	Gemmatimonas aurantiaca T-27	Gemmatimonas	Gemmatimonadaceae	Gemmatimonadales	Gemmatimonadetes (class)	Gemmatimonadetes		Bacteria
a3	Candidatus Koribacter versatilis Ellin345	Candidatus Koribacter				Acidobacteria		Bacteria
25	Candidatus Solibacter usitatus Ellin6076	Candidatus Solibacter	Solibacteraceae	Solibacterales	Solibacteres	Acidobacteria		Bacteria
2L	Acidobacterium capsulatum ATCC 51196	Acidobacterium	Acidobacteriaceae	Acidobacteriales	Acidobacteria (class)	Acidobacteria		Bacteria
94	Elusimicrobium minutum Pei191	Elusimicrobium	Elusimicrobiaceae	Elusimicrobiales	Elusimicrobia (class)	Elusimicrobia		Bacteria
k6	uncultured Termite group 1 bacterium phylotype Rs-D17					Elusimicrobia		Bacteria
9s	Pelodictyon phaeoclathratiforme BU-1	Pelodictyon	Chlorobiaceae	Chlorobiales	Chlorobia	Chlorobi		Bacteria
p7	Pelodictyon luteolum DSM 273	Pelodictyon	Chlorobiaceae	Chlorobiales	Chlorobia	Chlorobi		Bacteria
c5	Chlorobium chlorochromatii CaD3	Chlorobium	Chlorobiaceae	Chlorobiales	Chlorobia	Chlorobi		Bacteria
3v	Chlorobium phaeobacteroides DSM 266	Chlorobium	Chlorobiaceae	Chlorobiales	Chlorobia	Chlorobi		Bacteria
1x	Chlorobium phaeovibrioides DSM 265	Chlorobium	Chlorobiaceae	Chlorobiales	Chlorobia	Chlorobi		Bacteria
fp	Chlorobium limicola DSM 245	Chlorobium	Chlorobiaceae	Chlorobiales	Chlorobia	Chlorobi		Bacteria
ev	Chlorobaculum parvum NCIB 8327	Chlorobaculum	Chlorobiaceae	Chlorobiales	Chlorobia	Chlorobi		Bacteria
ch	Chlorobium tepidum TLS	Chlorobaculum	Chlorobiaceae	Chlorobiales	Chlorobia	Chlorobi		Bacteria
9o	Chloroherpeton thalassium ATCC 35110	Chloroherpeton	Chlorobiaceae	Chlorobiales	Chlorobia	Chlorobi		Bacteria
ed	Prosthecochloris aestuarii DSM 271	Prosthecochloris	Chlorobiaceae	Chlorobiales	Chlorobia	Chlorobi		Bacteria
h8	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2	Candidatus Azobacteroides		Bacteroidales	Bacteroidia	Bacteroidetes		Bacteria
0g	Parabacteroides distasonis ATCC 8503	Parabacteroides	Porphyromonadaceae	Bacteroidales	Bacteroidia	Bacteroidetes		Bacteria
pg	Porphyromonas gingivalis W83	Porphyromonas	Porphyromonadaceae	Bacteroidales	Bacteroidia	Bacteroidetes		Bacteria
0r	Bacteroides vulgatus ATCC 8482	Bacteroides	Bacteroidaceae	Bacteroidales	Bacteroidia	Bacteroidetes		Bacteria
bt	Bacteroides thetaiotaomicron VPI-5482	Bacteroides	Bacteroidaceae	Bacteroidales	Bacteroidia	Bacteroidetes		Bacteria
fl	Bacteroides fragilis NCTC 9343	Bacteroides	Bacteroidaceae	Bacteroidales	Bacteroidia	Bacteroidetes		Bacteria
f6	Candidatus Amoebophilus asiaticus 5a2	Candidatus Amoebophilus				Bacteroidetes		Bacteria
rv	Salinibacter ruber DSM 13855	Salinibacter	Rhodothermaceae	Sphingobacteriales	Sphingobacteria	Bacteroidetes		Bacteria
5Y	Chitinophaga pinensis DSM 2588	Chitinophaga		Sphingobacteriales	Sphingobacteria	Bacteroidetes		Bacteria
2D	Dyadobacter fermentans DSM 18053	Dyadobacter	Flexibacteraceae	Sphingobacteriales	Sphingobacteria	Bacteroidetes		Bacteria
37	Cytophaga hutchinsonii ATCC 33406	Cytophaga	Flexibacteraceae	Sphingobacteriales	Sphingobacteria	Bacteroidetes		Bacteria
3Y	Pedobacter heparinus DSM 2366	Pedobacter	Sphingobacteriaceae	Sphingobacteriales	Sphingobacteria	Bacteroidetes		Bacteria
64	Candidatus Sulcia muelleri GWSS		Herpetosiphonaceae	Herpetosiphonales	Chloroflexi (class)	Chloroflexi		Bacteria
1s	Gramella forsetii KT0803	Gramella	Flavobacteriaceae	Flavobacteriales	Flavobacteria	Bacteroidetes		Bacteria
4V	Flavobacteriaceae bacterium 3519-10		Flavobacteriaceae	Flavobacteriales	Flavobacteria	Bacteroidetes		Bacteria
1M	Capnocytophaga ochracea DSM 7271	Capnocytophaga	Flavobacteriaceae	Flavobacteriales	Flavobacteria	Bacteroidetes		Bacteria
5d	Flavobacterium psychrophilum JIP02/86	Flavobacterium	Flavobacteriaceae	Flavobacteriales	Flavobacteria	Bacteroidetes		Bacteria
1z	Flavobacterium johnsoniae UW101	Flavobacterium	Flavobacteriaceae	Flavobacteriales	Flavobacteria	Bacteroidetes		Bacteria
ix	Dictyoglomus turgidum DSM 6724	Dictyoglomus	Dictyoglomaceae	Dictyoglomales	Dictyoglomia	Dictyoglomi		Bacteria
k3	Dictyoglomus thermophilum H-6-12	Dictyoglomus	Dictyoglomaceae	Dictyoglomales	Dictyoglomia	Dictyoglomi		Bacteria
p0	Candidatus Protochlamydia amoebophila UWE25	Candidatus Protochlamydia	Parachlamydiaceae	Chlamydiales	Chlamydiae (class)	Chlamydiae		Bacteria
c2	Chlamydophila pneumoniae TW-183	Chlamydophila	Chlamydiaceae	Chlamydiales	Chlamydiae (class)	Chlamydiae		Bacteria
c1	Chlamydophila caviae GPIC	Chlamydophila	Chlamydiaceae	Chlamydiales	Chlamydiae (class)	Chlamydiae		Bacteria
c6	Chlamydophila felis Fe/C-56	Chlamydophila	Chlamydiaceae	Chlamydiales	Chlamydiae (class)	Chlamydiae		Bacteria
c4	Chlamydophila abortus S26/3	Chlamydophila	Chlamydiaceae	Chlamydiales	Chlamydiae (class)	Chlamydiae		Bacteria
cm	Chlamydia muridarum Nigg	Chlamydia	Chlamydiaceae	Chlamydiales	Chlamydiae (class)	Chlamydiae		Bacteria
ct	Chlamydia trachomatis D/UW-3/CX	Chlamydia	Chlamydiaceae	Chlamydiales	Chlamydiae (class)	Chlamydiae		Bacteria
8i	Opitutus terrae PB90-1	Opitutus	Opitutaceae		Opitutae	Verrucomicrobia		Bacteria
9h	Methylacidiphilum infernorum V4	Methylacidiphilum				Verrucomicrobia		Bacteria
9a	Akkermansia muciniphila ATCC BAA-835	Akkermansia	Verrucomicrobiaceae	Verrucomicrobiales	Verrucomicrobiae	Verrucomicrobia		Bacteria
k7	Thermodesulfovibrio yellowstonii DSM 11347	Thermodesulfovibrio	Nitrospiraceae	Nitrospirales	Nitrospira (class)	Nitrospirae		Bacteria
0M	Leptotrichia buccalis DSM 1135	Leptotrichia	Fusobacteriaceae	Fusobacteriales	Fusobacteria (class)	Fusobacteria		Bacteria
fn	Fusobacterium nucleatum ssp. nucleatum ATCC 25586	Fusobacterium	Fusobacteriaceae	Fusobacteriales	Fusobacteria (class)	Fusobacteria		Bacteria
1B	Deinococcus deserti VCD115	Deinococcus	Deinococcaceae	Deinococcales	Deinococci	Deinococcus-Thermus		Bacteria
d4	Deinococcus geothermalis DSM 11300	Deinococcus	Deinococcaceae	Deinococcales	Deinococci	Deinococcus-Thermus		Bacteria
dr	Deinococcus radiodurans R1	Deinococcus	Deinococcaceae	Deinococcales	Deinococci	Deinococcus-Thermus		Bacteria
t0	Thermus thermophilus HB27	Thermus	Thermaceae	Thermales	Deinococci	Deinococcus-Thermus		Bacteria
j0	Natranaerobius thermophilus JW/NM-WN-LF	Natranaerobius	Natranaerobiaceae	Natranaerobiales	Clostridia	Firmicutes		Bacteria
sb	Symbiobacterium thermophilum IAM 14863	Symbiobacterium	Clostridiales Family XVIII. Incertae Sedis	Clostridiales	Clostridia	Firmicutes		Bacteria
1H	Anaerococcus prevotii DSM 20548	Anaerococcus	Clostridiales Family XI. Incertae Sedis	Clostridiales	Clostridia	Firmicutes		Bacteria
8g	Finegoldia magna ATCC 29328	Finegoldia	Clostridiales Family XI. Incertae Sedis	Clostridiales	Clostridia	Firmicutes		Bacteria
5E	Anaerocellum thermophilum DSM 6725	Anaerocellum		Clostridiales	Clostridia	Firmicutes		Bacteria
7u	Candidatus Desulforudis audaxviator MP104C	Candidatus Desulforudis	Peptococcaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
09	Pelotomaculum thermopropionicum SI	Pelotomaculum	Peptococcaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
d2	Desulfitobacterium hafniense Y51	Desulfitobacterium	Peptococcaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
0c	Desulfotomaculum reducens MI-1	Desulfotomaculum	Peptococcaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
2P	Desulfotomaculum acetoxidans DSM 771	Desulfotomaculum	Peptococcaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
4P	Eubacterium rectale ATCC 33656	Eubacterium	Eubacteriaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
3N	Eubacterium eligens ATCC 27750	Eubacterium	Eubacteriaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
2l	Syntrophomonas wolfei ssp. wolfei Goettingen	Syntrophomonas	Syntrophomonadaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
8j	Heliobacterium modesticaldum Ice1	Heliobacterium	Heliobacteriaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
68	Alkaliphilus oremlandii OhILAs	Alkaliphilus	Clostridiaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
0n	Alkaliphilus metalliredigens QYMF	Alkaliphilus	Clostridiaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
5z	Clostridium phytofermentans ISDg	Clostridium	Clostridiaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
12	Clostridium novyi NT	Clostridium	Clostridiaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
16	Clostridium kluyveri DSM 555	Clostridium	Clostridiaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
0Z	Clostridium cellulolyticum H10	Clostridium	Clostridiaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
03	Clostridium beijerinckii NCIMB 8052	Clostridium	Clostridiaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
4x	Clostridium thermocellum ATCC 27405	Clostridium	Clostridiaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
te	Clostridium tetani E88	Clostridium	Clostridiaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
cu	Clostridium perfringens 13	Clostridium	Clostridiaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
3x	Clostridium difficile 630	Clostridium	Clostridiaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
0i	Clostridium botulinum A ATCC 3502	Clostridium	Clostridiaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
ca	Clostridium acetobutylicum ATCC 824	Clostridium	Clostridiaceae	Clostridiales	Clostridia	Firmicutes		Bacteria
1q	Caldicellulosiruptor saccharolyticus DSM 8903	Caldicellulosiruptor	Thermoanaerobacterales Family III. Incertae Sedis	Thermoanaerobacterales	Clostridia	Firmicutes		Bacteria
h3	Coprothermobacter proteolyticus DSM 5265	Coprothermobacter	Thermodesulfobiaceae	Thermoanaerobacterales	Clostridia	Firmicutes		Bacteria
c9	Carboxydothermus hydrogenoformans Z-2901	Carboxydothermus	Thermoanaerobacteraceae	Thermoanaerobacterales	Clostridia	Firmicutes		Bacteria
m8	Moorella thermoacetica ATCC 39073	Moorella	Thermoanaerobacteraceae	Thermoanaerobacterales	Clostridia	Firmicutes		Bacteria
82	Thermoanaerobacter pseudethanolicus ATCC 33223	Thermoanaerobacter	Thermoanaerobacteraceae	Thermoanaerobacterales	Clostridia	Firmicutes		Bacteria
8d	Thermoanaerobacter sp. X514	Thermoanaerobacter	Thermoanaerobacteraceae	Thermoanaerobacterales	Clostridia	Firmicutes		Bacteria
tt	Thermoanaerobacter tengcongensis MB4	Thermoanaerobacter	Thermoanaerobacteraceae	Thermoanaerobacterales	Clostridia	Firmicutes		Bacteria
5D	Halothermothrix orenii H 168	Halothermothrix	Halanaerobiaceae	Halanaerobiales	Clostridia	Firmicutes		Bacteria
ef	Enterococcus faecalis V583	Enterococcus	Enterococcaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
4m	Oenococcus oeni PSU-1	Oenococcus	Leuconostocaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
7x	Leuconostoc citreum KM20	Leuconostoc	Leuconostocaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
2s	Leuconostoc mesenteroides ssp. mesenteroides ATCC 8293	Leuconostoc	Leuconostocaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
1o	Lactobacillus casei ATCC 334	Lactobacillus	Lactobacillaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
0F	Lactobacillus rhamnosus GG	Lactobacillus	Lactobacillaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
lj	Lactobacillus johnsonii NCC 533	Lactobacillus	Lactobacillaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
lv	Lactobacillus salivarius UCC118	Lactobacillus	Lactobacillaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
9b	Lactobacillus fermentum IFO 3956	Lactobacillus	Lactobacillaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
ls	Lactobacillus sakei ssp. sakei 23K	Lactobacillus	Lactobacillaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
49	Lactobacillus reuteri DSM 20016			Myxococcales	Deltaproteobacteria	Proteobacteria		Bacteria
13	Lactobacillus gasseri ATCC 33323		Dictyoglomaceae	Dictyoglomales	Dictyoglomia	Dictyoglomi		Bacteria
lb	Lactobacillus plantarum WCFS1	Lactobacillus	Lactobacillaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
79	Lactobacillus helveticus DPC 4571	Lactobacillus	Lactobacillaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
ld	Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842	Lactobacillus	Lactobacillaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
52	Lactobacillus brevis ATCC 367	Lactobacillus	Lactobacillaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
lt	Lactobacillus acidophilus NCFM	Lactobacillus	Lactobacillaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
0d	Pediococcus pentosaceus ATCC 25745	Pediococcus	Lactobacillaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
ll	Lactococcus lactis ssp. lactis Il1403	Lactococcus	Streptococcaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
jc	Streptococcus equi ssp. zooepidemicus MGCS10565	Streptococcus	Streptococcaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
4J	Streptococcus dysgalactiae ssp. equisimilis GGS_124	Streptococcus	Streptococcaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
5H	Streptococcus uberis 0140J	Streptococcus	Streptococcaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
x2	Streptococcus pyogenes M1 GAS	Streptococcus	Streptococcaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
sr	Streptococcus pneumoniae TIGR4	Streptococcus	Streptococcaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
s5	Streptococcus agalactiae NEM316	Streptococcus	Streptococcaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
s6	Streptococcus mutans UA159	Streptococcus	Streptococcaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
sd	Streptococcus thermophilus LMG 18311	Streptococcus	Streptococcaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
4r	Streptococcus suis 05ZYH33	Streptococcus	Streptococcaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
5b	Streptococcus sanguinis SK36	Streptococcus	Streptococcaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
6s	Streptococcus gordonii Challis subCH1	Streptococcus	Streptococcaceae	Lactobacillales	Bacilli	Firmicutes		Bacteria
0H	Exiguobacterium sp. AT1b	Exiguobacterium		Bacillales	Bacilli	Firmicutes		Bacteria
7r	Exiguobacterium sibiricum 255-15	Exiguobacterium		Bacillales	Bacilli	Firmicutes		Bacteria
4A	Alicyclobacillus acidocaldarius ssp. acidocaldarius DSM 446	Alicyclobacillus	Alicyclobacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
2F	Brevibacillus brevis NBRC 100599	Brevibacillus	Paenibacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
3H	Paenibacillus sp. JDR-2	Paenibacillus	Paenibacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
2g	Listeria welshimeri ser. 6b SLCC5334	Listeria	Listeriaceae	Bacillales	Bacilli	Firmicutes		Bacteria
li	Listeria innocua Clip11262	Listeria	Listeriaceae	Bacillales	Bacilli	Firmicutes		Bacteria
lm	Listeria monocytogenes EGD-e	Listeria	Listeriaceae	Bacillales	Bacilli	Firmicutes		Bacteria
7z	Lysinibacillus sphaericus C3-41	Lysinibacillus	Planococcaceae	Bacillales	Bacilli	Firmicutes		Bacteria
oi	Oceanobacillus iheyensis HTE831	Oceanobacillus	Bacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
j6	Anoxybacillus flavithermus WK1	Anoxybacillus	Bacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
1L	Geobacillus sp. WCH70	Geobacillus	Bacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
1u	Geobacillus thermodenitrificans NG80-2	Geobacillus	Bacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
gk	Geobacillus kaustophilus HTA426	Geobacillus	Bacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
bs	Bacillus subtilis ssp. subtilis 168	Bacillus	Bacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
lf	Bacillus licheniformis ATCC 14580	Bacillus	Bacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
2o	Bacillus amyloliquefaciens FZB42	Bacillus	Bacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
bh	Bacillus halodurans C-125	Bacillus	Bacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
62	Bacillus weihenstephanensis KBAB4	Bacillus	Bacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
ko	Bacillus thuringiensis ser. konkukian 97-27	Bacillus	Bacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
bc	Bacillus cereus ATCC 14579	Bacillus	Bacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
b2	Bacillus anthracis Ames Ancestor	Bacillus	Bacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
x4	Bacillus clausii KSM-K16	Bacillus	Bacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
6f	Bacillus pumilus SAFR-032	Bacillus	Bacillaceae	Bacillales	Bacilli	Firmicutes		Bacteria
1V	Macrococcus caseolyticus JCSC5402	Macrococcus	Staphylococcaceae	Bacillales	Bacilli	Firmicutes		Bacteria
zt	Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305	Staphylococcus	Staphylococcaceae	Bacillales	Bacilli	Firmicutes		Bacteria
zh	Staphylococcus haemolyticus JCSC1435	Staphylococcus	Staphylococcaceae	Bacillales	Bacilli	Firmicutes		Bacteria
ep	Staphylococcus epidermidis RP62A	Staphylococcus	Staphylococcaceae	Bacillales	Bacilli	Firmicutes		Bacteria
5S	Staphylococcus carnosus ssp. carnosus TM300	Staphylococcus	Staphylococcaceae	Bacillales	Bacilli	Firmicutes		Bacteria
aq	Staphylococcus aureus ssp. aureus NCTC 8325	Staphylococcus	Staphylococcaceae	Bacillales	Bacilli	Firmicutes		Bacteria
6C	Nautilia profundicola AmH	Nautilia	Nautiliaceae	Nautiliales	Epsilonproteobacteria	Proteobacteria		Bacteria
6k	Arcobacter butzleri RM4018	Arcobacter	Campylobacteraceae	Campylobacterales	Epsilonproteobacteria	Proteobacteria		Bacteria
00	Campylobacter hominis ATCC BAA-381	Campylobacter	Campylobacteraceae	Campylobacterales	Epsilonproteobacteria	Proteobacteria		Bacteria
4I	Campylobacter lari RM2100	Campylobacter	Campylobacteraceae	Campylobacterales	Epsilonproteobacteria	Proteobacteria		Bacteria
3y	Campylobacter curvus 525.92	Campylobacter	Campylobacteraceae	Campylobacterales	Epsilonproteobacteria	Proteobacteria		Bacteria
6x	Campylobacter concisus 13826	Campylobacter	Campylobacteraceae	Campylobacterales	Epsilonproteobacteria	Proteobacteria		Bacteria
cj	Campylobacter jejuni ssp. jejuni NCTC 11168	Campylobacter	Campylobacteraceae	Campylobacterales	Epsilonproteobacteria	Proteobacteria		Bacteria
35	Campylobacter fetus ssp. fetus 82-40	Campylobacter	Campylobacteraceae	Campylobacterales	Epsilonproteobacteria	Proteobacteria		Bacteria
ti	Sulfurimonas denitrificans DSM 1251	Sulfurimonas	Helicobacteraceae	Campylobacterales	Epsilonproteobacteria	Proteobacteria		Bacteria
ws	Wolinella succinogenes DSM 1740	Wolinella	Helicobacteraceae	Campylobacterales	Epsilonproteobacteria	Proteobacteria		Bacteria
hh	Helicobacter hepaticus ATCC 51449	Helicobacter	Helicobacteraceae	Campylobacterales	Epsilonproteobacteria	Proteobacteria		Bacteria
hl	Helicobacter acinonychis Sheeba	Helicobacter	Helicobacteraceae	Campylobacterales	Epsilonproteobacteria	Proteobacteria		Bacteria
hp	Helicobacter pylori 26695	Helicobacter	Helicobacteraceae	Campylobacterales	Epsilonproteobacteria	Proteobacteria		Bacteria
1d	Nitratiruptor sp. SB155-2	Nitratiruptor			Epsilonproteobacteria	Proteobacteria		Bacteria
1t	Sulfurovum sp. NBC37-1	Sulfurovum			Epsilonproteobacteria	Proteobacteria		Bacteria
bd	Bdellovibrio bacteriovorus HD100	Bdellovibrio	Bdellovibrionaceae	Bdellovibrionales	Deltaproteobacteria	Proteobacteria		Bacteria
yt	Syntrophus aciditrophicus SB	Syntrophus	Syntrophaceae	Syntrophobacterales	Deltaproteobacteria	Proteobacteria		Bacteria
0l	Syntrophobacter fumaroxidans MPOB	Syntrophobacter	Syntrophobacteraceae	Syntrophobacterales	Deltaproteobacteria	Proteobacteria		Bacteria
dp	Desulfotalea psychrophila LSv54	Desulfotalea	Desulfobulbaceae	Desulfobacterales	Deltaproteobacteria	Proteobacteria		Bacteria
9l	Desulfatibacillum alkenivorans AK-01	Desulfatibacillum	Desulfobacteraceae	Desulfobacterales	Deltaproteobacteria	Proteobacteria		Bacteria
3W	Desulfobacterium autotrophicum HRM2	Desulfobacterium	Desulfobacteraceae	Desulfobacterales	Deltaproteobacteria	Proteobacteria		Bacteria
6c	Desulfococcus oleovorans Hxd3	Desulfococcus	Desulfobacteraceae	Desulfobacterales	Deltaproteobacteria	Proteobacteria		Bacteria
2K	Desulfohalobium retbaense DSM 5692	Desulfohalobium	Desulfohalobiaceae	Desulfovibrionales	Deltaproteobacteria	Proteobacteria		Bacteria
6D	Desulfomicrobium baculatum DSM 4028	Desulfomicrobium	Desulfomicrobiaceae	Desulfovibrionales	Deltaproteobacteria	Proteobacteria		Bacteria
ln	Lawsonia intracellularis PHE/MN1-00	Lawsonia	Desulfovibrionaceae	Desulfovibrionales	Deltaproteobacteria	Proteobacteria		Bacteria
5K	Desulfovibrio magneticus RS-1	Desulfovibrio	Desulfovibrionaceae	Desulfovibrionales	Deltaproteobacteria	Proteobacteria		Bacteria
dv	Desulfovibrio vulgaris Hildenborough	Desulfovibrio	Desulfovibrionaceae	Desulfovibrionales	Deltaproteobacteria	Proteobacteria		Bacteria
3F	Desulfovibrio salexigens DSM 2638	Desulfovibrio	Desulfovibrionaceae	Desulfovibrionales	Deltaproteobacteria	Proteobacteria		Bacteria
ds	Desulfovibrio desulfuricans ssp. desulfuricans G20	Desulfovibrio	Desulfovibrionaceae	Desulfovibrionales	Deltaproteobacteria	Proteobacteria		Bacteria
3c	Pelobacter propionicus DSM 2379	Pelobacter	Pelobacteraceae	Desulfuromonadales	Deltaproteobacteria	Proteobacteria		Bacteria
p8	Pelobacter carbinolicus DSM 2380	Pelobacter	Pelobacteraceae	Desulfuromonadales	Deltaproteobacteria	Proteobacteria		Bacteria
3g	Geobacter uraniireducens Rf4	Geobacter	Geobacteraceae	Desulfuromonadales	Deltaproteobacteria	Proteobacteria		Bacteria
5Z	Geobacter sp. FRC-32	Geobacter	Geobacteraceae	Desulfuromonadales	Deltaproteobacteria	Proteobacteria		Bacteria
9z	Geobacter lovleyi SZ	Geobacter	Geobacteraceae	Desulfuromonadales	Deltaproteobacteria	Proteobacteria		Bacteria
jw	Geobacter bemidjiensis Bem	Geobacter	Geobacteraceae	Desulfuromonadales	Deltaproteobacteria	Proteobacteria		Bacteria
gs	Geobacter sulfurreducens PCA	Geobacter	Geobacteraceae	Desulfuromonadales	Deltaproteobacteria	Proteobacteria		Bacteria
gm	Geobacter metallireducens GS-15	Geobacter	Geobacteraceae	Desulfuromonadales	Deltaproteobacteria	Proteobacteria		Bacteria
60	Sorangium cellulosum So ce 56	Sorangium	Polyangiaceae	Myxococcales	Deltaproteobacteria	Proteobacteria		Bacteria
55	Anaeromyxobacter sp. Fw109-5	Anaeromyxobacter	Myxococcaceae	Myxococcales	Deltaproteobacteria	Proteobacteria		Bacteria
ae	Anaeromyxobacter dehalogenans 2CP-C	Anaeromyxobacter	Myxococcaceae	Myxococcales	Deltaproteobacteria	Proteobacteria		Bacteria
m1	Myxococcus xanthus DK 1622	Myxococcus	Myxococcaceae	Myxococcales	Deltaproteobacteria	Proteobacteria		Bacteria
53	Magnetococcus sp. MC-1	Magnetococcus				Proteobacteria		Bacteria
az	Aromatoleum aromaticum EbN1	Aromatoleum	Rhodocyclaceae	Rhodocyclales	Betaproteobacteria	Proteobacteria		Bacteria
dj	Dechloromonas aromatica RCB	Dechloromonas	Rhodocyclaceae	Rhodocyclales	Betaproteobacteria	Proteobacteria		Bacteria
5A	Thauera sp. MZ1T	Thauera	Rhodocyclaceae	Rhodocyclales	Betaproteobacteria	Proteobacteria		Bacteria
0N	Laribacter hongkongensis HLHK9	Laribacter	Neisseriaceae	Neisseriales	Betaproteobacteria	Proteobacteria		Bacteria
vi	Chromobacterium violaceum ATCC 12472	Chromobacterium	Neisseriaceae	Neisseriales	Betaproteobacteria	Proteobacteria		Bacteria
nn	Neisseria meningitidis Z2491	Neisseria	Neisseriaceae	Neisseriales	Betaproteobacteria	Proteobacteria		Bacteria
ni	Neisseria gonorrhoeae FA 1090	Neisseria	Neisseriaceae	Neisseriales	Betaproteobacteria	Proteobacteria		Bacteria
1W	Methylotenera mobilis JLW8	Methylotenera	Methylophilaceae	Methylophilales	Betaproteobacteria	Proteobacteria		Bacteria
4R	Methylovorus sp. SIP3-4	Methylovorus	Methylophilaceae	Methylophilales	Betaproteobacteria	Proteobacteria		Bacteria
m7	Methylobacillus flagellatus KT	Methylobacillus	Methylophilaceae	Methylophilales	Betaproteobacteria	Proteobacteria		Bacteria
nt	Thiobacillus denitrificans ATCC 25259	Thiobacillus	Hydrogenophilaceae	Hydrogenophilales	Betaproteobacteria	Proteobacteria		Bacteria
0E	Candidatus Accumulibacter phosphatis clade IIA UW-1	Candidatus Accumulibacter			Betaproteobacteria	Proteobacteria		Bacteria
14	Methylibium petroleiphilum PM1	Dictyoglomus	Dictyoglomaceae	Dictyoglomales	Dictyoglomia	Dictyoglomi		Bacteria
7i	Leptothrix cholodnii SP-6	Leptothrix		Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
rl	Ralstonia eutropha JMP134	Cupriavidus	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
9x	Cupriavidus taiwanensis	Cupriavidus	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
r4	Ralstonia metallidurans CH34	Cupriavidus	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
kq	Ralstonia pickettii 12J	Ralstonia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
rs	Ralstonia solanacearum GMI1000	Ralstonia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
0s	Polynucleobacter necessarius ssp. asymbioticus QLW-P1DMWA-1	Polynucleobacter	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
ku	Burkholderia phytofirmans PsJN	Burkholderia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
90	Burkholderia phymatum STM815	Burkholderia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
b5	Burkholderia thailandensis E264	Burkholderia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
pe	Burkholderia pseudomallei K96243	Burkholderia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
bi	Burkholderia mallei ATCC 23344	Burkholderia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
bk	Burkholderia sp. 383	Burkholderia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
0u	Burkholderia ambifaria AMMD	Burkholderia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
b6	Burkholderia cenocepacia AU 1054	Burkholderia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
76	Burkholderia multivorans ATCC 17616	Burkholderia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
30	Burkholderia vietnamiensis G4	Burkholderia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
b4	Burkholderia xenovorans LB400	Burkholderia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
2Y	Burkholderia glumae BGR1	Burkholderia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
4b	Verminephrobacter eiseniae EF01-2	Verminephrobacter	Comamonadaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
0U	Diaphorobacter sp. TPSY	Diaphorobacter	Comamonadaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
7d	Delftia acidovorans SPH-1	Delftia	Comamonadaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
p6	Polaromonas sp. JS666	Polaromonas	Comamonadaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
01	Polaromonas naphthalenivorans CJ2	Polaromonas	Comamonadaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
2B	Variovorax paradoxus S110	Variovorax	Comamonadaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
rx	Rhodoferax ferrireducens T118	Rhodoferax	Comamonadaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
43	Acidovorax sp. JS42	Acidovorax	Comamonadaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
4t	Acidovorax citrulli AAC00-1	Acidovorax	Comamonadaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
5e	Herminiimonas arsenicoxydans	Herminiimonas	Oxalobacteraceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
4d	Janthinobacterium sp. Marseille	Janthinobacterium	Oxalobacteraceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
5y	Bordetella petrii DSM 12804	Bordetella	Alcaligenaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
9k	Bordetella avium 197N	Bordetella	Alcaligenaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
be	Bordetella pertussis Tohama I	Bordetella	Alcaligenaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
bp	Bordetella parapertussis 12822	Bordetella	Alcaligenaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
bo	Bordetella bronchiseptica RB50	Bordetella	Alcaligenaceae	Burkholderiales	Betaproteobacteria	Proteobacteria		Bacteria
nl	Nitrosospira multiformis ATCC 25196	Nitrosospira	Nitrosomonadaceae	Nitrosomonadales	Betaproteobacteria	Proteobacteria		Bacteria
3j	Nitrosomonas eutropha C91	Nitrosomonas	Nitrosomonadaceae	Nitrosomonadales	Betaproteobacteria	Proteobacteria		Bacteria
ne	Nitrosomonas europaea ATCC 19718	Nitrosomonas	Nitrosomonadaceae	Nitrosomonadales	Betaproteobacteria	Proteobacteria		Bacteria
7o	Caulobacter sp. K31	Caulobacter	Caulobacteraceae	Caulobacterales	Alphaproteobacteria	Proteobacteria		Bacteria
cc	Caulobacter crescentus CB15	Caulobacter	Caulobacteraceae	Caulobacterales	Alphaproteobacteria	Proteobacteria		Bacteria
kk	Phenylobacterium zucineum HLK1	Phenylobacterium	Caulobacteraceae	Caulobacterales	Alphaproteobacteria	Proteobacteria		Bacteria
ey	Erythrobacter litoralis HTCC2594	Erythrobacter	Erythrobacteraceae	Sphingomonadales	Alphaproteobacteria	Proteobacteria		Bacteria
ak	Sphingopyxis alaskensis RB2256	Sphingopyxis	Sphingomonadaceae	Sphingomonadales	Alphaproteobacteria	Proteobacteria

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Genome Names, Identifiers and Phylogenetic Trees

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