SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Biological Process (BP): columnar/cuboidal epithelial cell development

(show info)

Jump to [ Top · GO Hierarchy · Superfamily · Family · Supra-domain ]

Root: GO Hierarchy Containing Three Sub-Ontologies (BP, MF, CC)

Shortest distance to current term (+ for parents, - for children) GO term [GO ID] <#Children> #High-quality
(SF|FA)
#Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   biological_process [GO:0008150] <24>
+ + + + + 5:   cellular process [GO:0009987] <21>(372|486) (1162|1371|744)
+ + + + + 5:   single-organism process [GO:0044699] <23>(290|375) (996|1199|711)
+ + + + 4:   developmental process [GO:0032502] <12>(88|106) (562|634|415)
+ + + + 4:   single-organism cellular process [GO:0044763] <194>(233|302) (895|984|562)
+ + + + 4:   single-organism developmental process [GO:0044767] <413>(85|101) (556|628|408)
+ + + + 4:   tissue development [GO:0009888] <29>(31|30) (318|310|205)
+ + + 3:   anatomical structure development [GO:0048856] <208>(86|100) (540|615|406)
+ + + 3:   cell differentiation [GO:0030154] <91>(51|53) (394|430|283)
+ + + 3:   cellular developmental process [GO:0048869] <17>(54|55) (410|441|290)
+ + + 3:   epithelium development [GO:0060429] <22>(14|14) (241|223|128)
+ + 2:   cell development [GO:0048468] <46>(25|24) (312|303|203)
+ + 2:   epithelial cell differentiation [GO:0030855] <25>(6|6) (133|112|74)
+ 1:   columnar/cuboidal epithelial cell differentiation [GO:0002065] <5>(3|3) (65|47|26)
+ 1:   epithelial cell development [GO:0002064] <11>(2|2) (94|82|56)
0:   columnar/cuboidal epithelial cell development [GO:0002066] <5>(1|1) (58|42|21)
- 1:   ovarian follicle cell development [GO:0030707] <8>(0|0) (47|33|17)
- 1:   glandular epithelial cell development [GO:0002068] <6>(0|0) (7|3|1)
- 1:   columnar/cuboidal epithelial cell maturation [GO:0002069] <2>(0|0) (1|0|0)
- 1:   auditory receptor cell development [GO:0060117] <1>(1|1) (6|4|2)
- 1:   intestinal epithelial cell development [GO:0060576] <1>(0|0) (0|0|0)


Jump to [ Top · GO Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
Cu,Zn superoxide dismutase-like00.000000000000001925Direct


Jump to [ Top · GO Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
Cu,Zn superoxide dismutase-like00.000000000000008864Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this GO term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · GO Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
HR1 repeat0Direct
Cu,Zn superoxide dismutase-like9.676e-16Direct
Stathmin0.0000000000004604Direct
SMAD MH1 domain0.0000000008494Direct
Kix domain of CBP (creb binding protein)0.000000001385Direct
A middle domain of Talin 10.00000005859Direct
Snake toxin-like0.0000001474Direct
I/LWEQ domain0.000000243Direct
TAZ domain0.0000003553Direct
BAR/IMD domain-like0.0000005146Direct
N-terminal domain of cbl (N-cbl)0.000002308Direct
KA1-like0.000008002Direct
RNA-binding domain, RBD0.00001214Direct
dsRNA-binding domain-like0.00001228Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.00001582Direct
Zn-finger domain of Sec23/240.00001808Direct
(Phosphotyrosine protein) phosphatases II0.00002716Direct
L27 domain0.00004136Direct
Blood coagulation inhibitor (disintegrin)0.00009339Direct
A DNA-binding domain in eukaryotic transcription factors0.0002027Direct
CRAL/TRIO domain0.0002702Direct
beta-sandwich domain of Sec23/240.0004009Direct
LuxS/MPP-like metallohydrolase0.0004361Direct
SOCS box-like0.0005523Direct
PDZ domain-like0.4467Inherited
vWA-like0.04803Inherited
Cadherin-like0.006745Inherited
Tudor/PWWP/MBT0.9421Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.423Inherited
WD40 repeat-like0.1899Inherited
Protein kinase-like (PK-like)0.0267Inherited
F-box domain0.681Inherited
SH3-domain0.001173Inherited
SMAD/FHA domain0.002613Inherited
p53-like transcription factors0.9953Inherited
SH2 domain0.01141Inherited
"Winged helix" DNA-binding domain0.7742Inherited
Chromo domain-like0.02646Inherited
Heme-dependent peroxidases0.01557Inherited
Kazal-type serine protease inhibitors0.02269Inherited
Ypt/Rab-GAP domain of gyp1p0.001994Inherited
Tetraspanin0.00982Inherited
BRK domain-like0.01672Inherited
alpha-catenin/vinculin-like0.1567Inherited
Ankyrin repeat0.7343Inherited
Second domain of FERM0.9856Inherited
Actin depolymerizing proteins0.002906Inherited
SAP domain0.01317Inherited
TPR-like0.0634Inherited
PYP-like sensor domain (PAS domain)0.02838Inherited
PH domain-like1Inherited
Toll/Interleukin receptor TIR domain0.04822Inherited
Growth factor receptor domain1Inherited
DHS-like NAD/FAD-binding domain0.01224Inherited
Cystine-knot cytokines0.2358Inherited
lambda repressor-like DNA-binding domains0.4774Inherited
Homeodomain-like1Inherited
Nuclear receptor ligand-binding domain0.492Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48403,48452
  • 48403 - Ankyrin repeat
  • 48452 - TPR-like
  • 0Direct
    81995,55785
  • 81995 - beta-sandwich domain of Sec23/24
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0Direct
    63825,49265
  • 63825 - YWTD domain
  • 49265 - Fibronectin type III
  • 0Direct
    49265,63825
  • 49265 - Fibronectin type III
  • 63825 - YWTD domain
  • 0.00000000000824Direct
    109885,47220
  • 109885 - I/LWEQ domain
  • 47220 - alpha-catenin/vinculin-like
  • 0.00000000004563Direct
    54768,54768
  • 54768 - dsRNA-binding domain-like
  • 54768 - dsRNA-binding domain-like
  • 0.00000001948Direct
    52799,49562
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0.00000005781Direct
    109880,109885
  • 109880 - A middle domain of Talin 1
  • 109885 - I/LWEQ domain
  • 0.00000005859Direct
    57850,57933
  • 57850 - RING/U-box
  • 57933 - TAZ domain
  • 0.0000000767Direct
    109885,109885
  • 109885 - I/LWEQ domain
  • 109885 - I/LWEQ domain
  • 0.0000000987Direct
    81995,82919
  • 81995 - beta-sandwich domain of Sec23/24
  • 82919 - Zn-finger domain of Sec23/24
  • 0.0000004262Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.000001124Direct
    55550,57850
  • 55550 - SH2 domain
  • 57850 - RING/U-box
  • 0.000001799Direct
    47668,47473
  • 47668 - N-terminal domain of cbl (N-cbl)
  • 47473 - EF-hand
  • 0.000001799Direct
    47473,55550
  • 47473 - EF-hand
  • 55550 - SH2 domain
  • 0.000002308Direct
    50044,51695
  • 50044 - SH3-domain
  • 51695 - PLC-like phosphodiesterases
  • 0.000003631Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.000003665Direct
    55550,55550
  • 55550 - SH2 domain
  • 55550 - SH2 domain
  • 0.00001429Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0.00001808Direct
    69572,69572
  • 69572 - Activating enzymes of the ubiquitin-like proteins
  • 69572 - Activating enzymes of the ubiquitin-like proteins
  • 0.00001927Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.00004666Direct
    55486,57552
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 57552 - Blood coagulation inhibitor (disintegrin)
  • 0.00005034Direct
    52047,52058
  • 52047 - RNI-like
  • 52058 - L domain-like
  • 0.0001105Direct
    55550,158235
  • 55550 - SH2 domain
  • 158235 - SOCS box-like
  • 0.0001395Direct
    52058,52047
  • 52058 - L domain-like
  • 52047 - RNI-like
  • 0.0001503Direct
    63411,63411
  • 63411 - LuxS/MPP-like metallohydrolase
  • 63411 - LuxS/MPP-like metallohydrolase
  • 0.0002592Direct
    50156,50156
  • 50156 - PDZ domain-like
  • 50156 - PDZ domain-like
  • 0.5402Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.006745Inherited
    81383,50978
  • 81383 - F-box domain
  • 50978 - WD40 repeat-like
  • 0.001389Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.2049Inherited
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.1881Inherited
    46966,50044
  • 46966 - Spectrin repeat
  • 50044 - SH3-domain
  • 0.277Inherited
    50044,46966
  • 50044 - SH3-domain
  • 46966 - Spectrin repeat
  • 0.4774Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.9951Inherited
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.002001Inherited
    47923,47923
  • 47923 - Ypt/Rab-GAP domain of gyp1p
  • 47923 - Ypt/Rab-GAP domain of gyp1p
  • 0.01672Inherited
    47220,47220
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 0.1567Inherited
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0.007095Inherited
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.9876Inherited
    52058,52058
  • 52058 - L domain-like
  • 52058 - L domain-like
  • 0.00577Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.6027Inherited
    57716,48508
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 48508 - Nuclear receptor ligand-binding domain
  • 0.6833Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    63825,49265,63825
  • 63825 - YWTD domain
  • 49265 - Fibronectin type III
  • 63825 - YWTD domain
  • 0Direct
    109885,109885,47220
  • 109885 - I/LWEQ domain
  • 109885 - I/LWEQ domain
  • 47220 - alpha-catenin/vinculin-like
  • 0.00000000004563Direct
    109885,47220,47220
  • 109885 - I/LWEQ domain
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 0.00000000004563Direct
    109885,109885,109885
  • 109885 - I/LWEQ domain
  • 109885 - I/LWEQ domain
  • 109885 - I/LWEQ domain
  • 0.0000000001501Direct
    50044,46966,46966
  • 50044 - SH3-domain
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.000000001588Direct
    52047,52058,52058
  • 52047 - RNI-like
  • 52058 - L domain-like
  • 52058 - L domain-like
  • 0.000000007102Direct
    52058,52047,52058
  • 52058 - L domain-like
  • 52047 - RNI-like
  • 52058 - L domain-like
  • 0.00000004473Direct
    109880,109885,109885
  • 109880 - A middle domain of Talin 1
  • 109885 - I/LWEQ domain
  • 109885 - I/LWEQ domain
  • 0.00000005859Direct
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0000003086Direct
    81995,82919,53300
  • 81995 - beta-sandwich domain of Sec23/24
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0.0000004262Direct
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0000009388Direct
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.000001124Direct
    47668,47473,55550
  • 47668 - N-terminal domain of cbl (N-cbl)
  • 47473 - EF-hand
  • 55550 - SH2 domain
  • 0.000001799Direct
    47473,55550,57850
  • 47473 - EF-hand
  • 55550 - SH2 domain
  • 57850 - RING/U-box
  • 0.000001799Direct
    63411,63411,63411
  • 63411 - LuxS/MPP-like metallohydrolase
  • 63411 - LuxS/MPP-like metallohydrolase
  • 63411 - LuxS/MPP-like metallohydrolase
  • 0.000002762Direct
    50044,51695,49562
  • 50044 - SH3-domain
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0.000003631Direct
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.006745Inherited
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.1881Inherited
    46966,46966,50044
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 50044 - SH3-domain
  • 0.277Inherited
    50156,50044,52540
  • 50156 - PDZ domain-like
  • 50044 - SH3-domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.3485Inherited
    46966,50044,46966
  • 46966 - Spectrin repeat
  • 50044 - SH3-domain
  • 46966 - Spectrin repeat
  • 0.4774Inherited


    Plot distribution on phylogenetic tree for Individual Supra-domains annotated by this GO term
    Plot tree as:   Download Newick format tree:   Browsing in Tree_gateway:
    (show help)