SUPERFAMILY 1.75 HMM library and genome assignments server

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Biological Process (BP): cytoplasm organization

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Root: GO Hierarchy Containing Three Sub-Ontologies (BP, MF, CC)

Shortest distance to current term (+ for parents, - for children) GO term [GO ID] <#Children> #High-quality
(SF|FA)
#Supra-domain
(Single|Duplex|Triple)
+ + + 3:   biological_process [GO:0008150] <24>
+ + 2:   cellular component organization or biogenesis [GO:0071840] <2>(123|122) (647|619|358)
+ + 2:   cellular process [GO:0009987] <21>(372|486) (1162|1371|744)
+ + 2:   single-organism process [GO:0044699] <23>(290|375) (996|1199|711)
+ 1:   cellular component organization [GO:0016043] <33>(113|104) (617|594|349)
+ 1:   single-organism cellular process [GO:0044763] <194>(233|302) (895|984|562)
0:   cytoplasm organization [GO:0007028] <2>(1|1) (11|5|1)
- 1:   pole plasm assembly [GO:0007315] <3>(1|1) (9|3|1)
- 1:   vitellogenesis [GO:0007296] <1>(0|0) (2|2|0)


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Superfamily

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SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
Phospholipase D/nuclease00.000000001076Direct


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Family

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SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
Nuclease00Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this GO term
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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Tudor/PWWP/MBT0Direct
Phospholipase D/nuclease0.0000000006327Direct
RNA-binding domain, RBD0.000000002968Direct
KA1-like0.000000006487Direct
POZ domain0.00000002777Direct
BAR/IMD domain-like0.0002307Direct
Ribonuclease H-like0.0002558Direct
Homeodomain-like0.0002924Direct
F-box domain0.01535Inherited
Protein kinase-like (PK-like)0.009217Inherited
PH domain-like0.001042Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46689,46689
  • 46689 - Homeodomain-like
  • 46689 - Homeodomain-like
  • 0Direct
    50729,50729
  • 50729 - PH domain-like
  • 50729 - PH domain-like
  • 0.0000001489Direct
    103657,50044
  • 103657 - BAR/IMD domain-like
  • 50044 - SH3-domain
  • 0.0000002772Direct
    81383,50978
  • 81383 - F-box domain
  • 50978 - WD40 repeat-like
  • 0.000004034Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.00209Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    46689,46689,46689
  • 46689 - Homeodomain-like
  • 46689 - Homeodomain-like
  • 46689 - Homeodomain-like
  • 0Direct


    Plot distribution on phylogenetic tree for Individual Supra-domains annotated by this GO term
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