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Biological Process (BP): lysosome organization

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Root: GO Hierarchy Containing Three Sub-Ontologies (BP, MF, CC)

Shortest distance to current term (+ for parents, - for children) GO term [GO ID] <#Children> #High-quality
(SF|FA)
#Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   biological_process [GO:0008150] <24>
+ + + + + 5:   cellular component organization or biogenesis [GO:0071840] <2>(123|122) (647|619|358)
+ + + + + 5:   cellular process [GO:0009987] <21>(372|486) (1162|1371|744)
+ + + + 4:   cellular component organization [GO:0016043] <33>(113|104) (617|594|349)
+ + + 3:   organelle organization [GO:0006996] <27>(69|66) (402|354|191)
+ + 2:   vacuole organization [GO:0007033] <7>(7|5) (32|16|3)
+ 1:   lytic vacuole organization [GO:0080171] <1>(4|3) (17|6|1)
0:   lysosome organization [GO:0007040] <3>(4|3) (17|6|1)
- 1:   phagolysosome assembly [GO:0001845] <3>(1|1) (4|2|0)
- 1:   regulation of lysosomal lumen pH [GO:0035751] <2>(2|1) (3|0|0)
- 1:   lysosomal membrane organization [GO:0097212] <1>(1|1) (1|0|0)


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Superfamily

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SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
Metallothionein10Inherited
MFS general substrate transporter10.00005387Inherited
alpha/beta-Hydrolases10.02072Inherited
P-loop containing nucleoside triphosphate hydrolases10.000000842Inherited


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Family

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SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
Metallothionein10Inherited
Thioesterases10.000000000000005999Inherited
G proteins10.00000000000003627Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this GO term
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Jump to [ Top · GO Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Metallothionein0Direct
Hook domain0Direct
CRAL/TRIO N-terminal domain0Direct
CRAL/TRIO domain0.00000000000001711Direct
UBC-like0.00000000002233Direct
Subtilisin-like0.000000009221Direct
Notch domain0.0000001235Direct
P-loop containing nucleoside triphosphate hydrolases0.0000005373Direct
PX domain0.0000009711Direct
BAR/IMD domain-like0.000001652Direct
Sec1/munc18-like (SM) proteins0.000005181Direct
MFS general substrate transporter0.00003641Direct
Glycosyl hydrolase domain0.0002301Direct
SNARE-like0.0003967Direct
Second domain of FERM0.000446Direct
alpha/beta-Hydrolases0.01569Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.001455Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46938,52087
  • 46938 - CRAL/TRIO N-terminal domain
  • 52087 - CRAL/TRIO domain
  • 0Direct
    64268,103657
  • 64268 - PX domain
  • 103657 - BAR/IMD domain-like
  • 0.000000001746Direct
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.0001326Direct
    51445,51011
  • 51445 - (Trans)glycosidases
  • 51011 - Glycosyl hydrolase domain
  • 0.0001821Direct
    49562,49562
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0.0001906Direct
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.0002174Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.0001043Direct


    Plot distribution on phylogenetic tree for Individual Supra-domains annotated by this GO term
    Plot tree as:   Download Newick format tree:   Browsing in Tree_gateway:
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