SUPERFAMILY 1.75 HMM library and genome assignments server

Biological Process (BP): peptidoglycan biosynthetic process

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Root: GO Hierarchy Containing Three Sub-Ontologies (BP, MF, CC)

Shortest distance to current term (+ for parents, - for children) GO term [GO ID] <#Children> #High-quality
(SF|FA)
#Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   metabolic process [GO:0008152] <13>(313|447) (998|1066|509)
+ + + + + 5:   nitrogen compound metabolic process [GO:0006807] <22>(176|215) (692|548|227)
+ + + + + 5:   organic substance metabolic process [GO:0071704] <46>(290|411) (961|1009|466)
+ + + + 4:   biosynthetic process [GO:0009058] <13>(158|198) (609|428|178)
+ + + + 4:   carbohydrate derivative metabolic process [GO:1901135] <50>(62|72) (308|180|75)
+ + + + 4:   cellular biosynthetic process [GO:0044249] <45>(150|184) (585|413|177)
+ + + + 4:   cellular component organization or biogenesis [GO:0071840] <2>(118|127) (622|615|343)
+ + + + 4:   cellular metabolic process [GO:0044237] <40>(290|401) (952|957|435)
+ + + + 4:   macromolecule metabolic process [GO:0043170] <15>(179|235) (710|735|340)
+ + + + 4:   organic substance biosynthetic process [GO:1901576] <41>(150|190) (590|414|174)
+ + + + 4:   organonitrogen compound metabolic process [GO:1901564] <65>(114|144) (471|327|145)
+ + + + 4:   single-organism metabolic process [GO:0044710] <60>(195|255) (727|665|306)
+ + + 3:   aminoglycan metabolic process [GO:0006022] <5>(5|7) (51|23|7)
+ + + 3:   biological_process [GO:0008150] <22>
+ + + 3:   carbohydrate derivative biosynthetic process [GO:1901137] <43>(35|41) (164|80|34)
+ + + 3:   cell wall organization or biogenesis [GO:0071554] <6>(10|9) (89|44|13)
+ + + 3:   cellular component biogenesis [GO:0044085] <11>(57|61) (369|282|155)
+ + + 3:   cellular macromolecule biosynthetic process [GO:0034645] <15>(63|77) (330|206|87)
+ + + 3:   cellular macromolecule metabolic process [GO:0044260] <12>(164|209) (662|633|268)
+ + + 3:   macromolecule biosynthetic process [GO:0009059] <19>(66|81) (338|212|88)
+ + + 3:   organonitrogen compound biosynthetic process [GO:1901566] <52>(70|84) (257|151|62)
+ + + 3:   single-organism biosynthetic process [GO:0044711] <64>(91|114) (381|254|94)
+ + 2:   aminoglycan biosynthetic process [GO:0006023] <3>(3|4) (31|15|5)
+ + 2:   cell wall biogenesis [GO:0042546] <6>(4|2) (48|25|8)
+ + 2:   cell wall macromolecule metabolic process [GO:0044036] <7>(7|5) (44|22|6)
+ + 2:   cellular component macromolecule biosynthetic process [GO:0070589] <2>(4|2) (29|13|3)
+ + 2:   cellular process [GO:0009987] <10>(383|504) (1133|1327|713)
+ + 2:   glycosaminoglycan metabolic process [GO:0030203] <6>(5|6) (37|18|6)
+ + 2:   single-organism process [GO:0044699] <29>(333|421) (1020|1225|712)
+ 1:   cell wall macromolecule biosynthetic process [GO:0044038] <6>(4|2) (29|12|3)
+ 1:   glycosaminoglycan biosynthetic process [GO:0006024] <8>(3|3) (23|13|4)
+ 1:   peptidoglycan metabolic process [GO:0000270] <3>(2|2) (17|10|2)
+ 1:   peptidoglycan-based cell wall biogenesis [GO:0009273] <5>(2|2) (24|16|5)
+ 1:   single-organism cellular process [GO:0044763] <224>(292|358) (958|1102|618)
0:   peptidoglycan biosynthetic process [GO:0009252] <1>(1|1) (14|9|2)
- 1:   peptidoglycan-protein cross-linking [GO:0018104] <3>(0|0) (1|0|0)


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Superfamily

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SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
beta-lactamase/transpeptidase-like0.000000000002250Direct


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Family

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SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
beta-Lactamase/D-ala carboxypeptidase0.0000000000022110Direct


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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
MurD-like peptide ligases, peptide-binding domain0Direct
MurD-like peptide ligases, catalytic domain0Direct
Lysozyme-like0Direct
MurE/MurF N-terminal domain0Direct
beta-lactamase/transpeptidase-like0Direct
MurCD N-terminal domain0Direct
Penicillin binding protein dimerisation domain0Direct
Penicillin-binding protein associated domain0Direct
Aspartate/glutamate racemase0.0000000000718Direct
L,D-transpeptidase catalytic domain-like0.0000000002289Direct
Alanine racemase C-terminal domain-like0.000000168Direct
PLP-binding barrel0.000001427Direct
PreATP-grasp domain0.000001805Direct
Glutathione synthetase ATP-binding domain-like0.00002391Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
56601,69189
  • 56601 - beta-lactamase/transpeptidase-like
  • 69189 - Penicillin-binding protein associated domain
  • 0Direct
    53623,53244
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 53244 - MurD-like peptide ligases, peptide-binding domain
  • 0Direct
    56519,56601
  • 56519 - Penicillin binding protein dimerisation domain
  • 56601 - beta-lactamase/transpeptidase-like
  • 0Direct
    51984,53623
  • 51984 - MurCD N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 0Direct
    63418,53623
  • 63418 - MurE/MurF N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 0Direct
    53955,56601
  • 53955 - Lysozyme-like
  • 56601 - beta-lactamase/transpeptidase-like
  • 0.00000000001641Direct
    53681,53681
  • 53681 - Aspartate/glutamate racemase
  • 53681 - Aspartate/glutamate racemase
  • 0.00000000002873Direct
    51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0.0000001006Direct
    52440,56059
  • 52440 - PreATP-grasp domain
  • 56059 - Glutathione synthetase ATP-binding domain-like
  • 0.000001163Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    51984,53623,53244
  • 51984 - MurCD N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 53244 - MurD-like peptide ligases, peptide-binding domain
  • 0Direct
    63418,53623,53244
  • 63418 - MurE/MurF N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 53244 - MurD-like peptide ligases, peptide-binding domain
  • 0Direct


    Plot distribution on phylogenetic tree for Individual Supra-domains annotated by this GO term
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