SUPERFAMILY 1.75 HMM library and genome assignments server

Biological Process (BP): peptidoglycan biosynthetic process

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Root: GO Hierarchy Containing Three Sub-Ontologies (BP, MF, CC)

Shortest distance to current term (+ for parents, - for children) GO term [GO ID] <#Children> #High-quality
(SF|FA)
#Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   biological_process [GO:0008150] <20>
+ + + + + 5:   biosynthetic process [GO:0009058] <12>(159|196) (608|428|178)
+ + + + + 5:   cellular process [GO:0009987] <5>(385|515) (1146|1338|724)
+ + + + + 5:   nitrogen compound metabolic process [GO:0006807] <20>(171|213) (670|540|223)
+ + + + + 5:   organic substance metabolic process [GO:0071704] <41>(284|404) (946|998|460)
+ + + + + 5:   single-organism process [GO:0044699] <27>(244|273) (870|1053|621)
+ + + + 4:   carbohydrate derivative metabolic process [GO:1901135] <48>(56|68) (288|172|75)
+ + + + 4:   cellular biosynthetic process [GO:0044249] <45>(150|182) (581|411|177)
+ + + + 4:   cellular component organization or biogenesis [GO:0071840] <3>(115|124) (620|609|343)
+ + + + 4:   cellular metabolic process [GO:0044237] <41>(286|398) (942|949|433)
+ + + + 4:   macromolecule metabolic process [GO:0043170] <14>(177|231) (702|726|334)
+ + + + 4:   metabolic process [GO:0008152] <12>(310|442) (990|1057|506)
+ + + + 4:   organic substance biosynthetic process [GO:1901576] <36>(151|187) (590|416|176)
+ + + + 4:   organonitrogen compound metabolic process [GO:1901564] <64>(109|141) (447|319|141)
+ + + + 4:   single-organism cellular process [GO:0044763] <70>(212|237) (815|951|551)
+ + + 3:   aminoglycan metabolic process [GO:0006022] <5>(5|7) (49|23|7)
+ + + 3:   carbohydrate derivative biosynthetic process [GO:1901137] <41>(33|38) (163|80|34)
+ + + 3:   cell wall organization or biogenesis [GO:0071554] <5>(9|9) (88|44|13)
+ + + 3:   cellular component biogenesis [GO:0044085] <11>(56|61) (369|281|155)
+ + + 3:   cellular macromolecule biosynthetic process [GO:0034645] <15>(63|77) (329|206|88)
+ + + 3:   cellular macromolecule metabolic process [GO:0044260] <12>(162|209) (659|631|266)
+ + + 3:   macromolecule biosynthetic process [GO:0009059] <19>(66|80) (335|210|88)
+ + + 3:   organonitrogen compound biosynthetic process [GO:1901566] <52>(68|79) (258|156|64)
+ + + 3:   single-organism metabolic process [GO:0044710] <28>(158|214) (580|477|226)
+ + 2:   aminoglycan biosynthetic process [GO:0006023] <3>(3|3) (30|15|5)
+ + 2:   cell wall biogenesis [GO:0042546] <7>(5|2) (48|25|8)
+ + 2:   cell wall macromolecule metabolic process [GO:0044036] <7>(7|5) (44|22|6)
+ + 2:   cellular component macromolecule biosynthetic process [GO:0070589] <2>(4|2) (29|13|3)
+ + 2:   glycosaminoglycan metabolic process [GO:0030203] <10>(5|6) (36|18|6)
+ 1:   cell wall macromolecule biosynthetic process [GO:0044038] <6>(4|2) (29|12|3)
+ 1:   glycosaminoglycan biosynthetic process [GO:0006024] <8>(3|3) (22|13|4)
+ 1:   peptidoglycan metabolic process [GO:0000270] <3>(2|2) (17|10|2)
+ 1:   peptidoglycan-based cell wall biogenesis [GO:0009273] <5>(2|2) (24|16|5)
0:   peptidoglycan biosynthetic process [GO:0009252] <1>(1|1) (14|9|2)
- 1:   peptidoglycan-protein cross-linking [GO:0018104] <3>(0|0) (1|0|0)


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Superfamily

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SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
beta-lactamase/transpeptidase-like8.074e-050Direct


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Family

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SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
beta-Lactamase/D-ala carboxypeptidase8.972e-050Direct


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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
MurCD N-terminal domain0Direct
MurD-like peptide ligases, peptide-binding domain0Direct
Penicillin binding protein dimerisation domain0Direct
MurE/MurF N-terminal domain0Direct
beta-lactamase/transpeptidase-like0Direct
MurD-like peptide ligases, catalytic domain0Direct
Aspartate/glutamate racemase6.84e-11Direct
Alanine racemase C-terminal domain-like1.367e-07Direct
PreATP-grasp domain1.86e-07Direct
PLP-binding barrel1.357e-06Direct
Glutathione synthetase ATP-binding domain-like7.887e-06Direct
Penicillin-binding protein associated domain1.432e-05Direct
Lysozyme-like0.0006399Direct
L,D-transpeptidase catalytic domain-like0.001303Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
63418,53623
  • 63418 - MurE/MurF N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 0Direct
    56519,56601
  • 56519 - Penicillin binding protein dimerisation domain
  • 56601 - beta-lactamase/transpeptidase-like
  • 0Direct
    51984,53623
  • 51984 - MurCD N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 0Direct
    53623,53244
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 53244 - MurD-like peptide ligases, peptide-binding domain
  • 0Direct
    53955,56601
  • 53955 - Lysozyme-like
  • 56601 - beta-lactamase/transpeptidase-like
  • 1.566e-11Direct
    53681,53681
  • 53681 - Aspartate/glutamate racemase
  • 53681 - Aspartate/glutamate racemase
  • 2.738e-11Direct
    52440,56059
  • 52440 - PreATP-grasp domain
  • 56059 - Glutathione synthetase ATP-binding domain-like
  • 7.591e-08Direct
    51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 9.239e-08Direct
    56601,69189
  • 56601 - beta-lactamase/transpeptidase-like
  • 69189 - Penicillin-binding protein associated domain
  • 1.432e-05Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    51984,53623,53244
  • 51984 - MurCD N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 53244 - MurD-like peptide ligases, peptide-binding domain
  • 0Direct
    63418,53623,53244
  • 63418 - MurE/MurF N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 53244 - MurD-like peptide ligases, peptide-binding domain
  • 0Direct


    Plot distribution on phylogenetic tree for Individual Supra-domains annotated by this GO term
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