SUPERFAMILY 1.75 HMM library and genome assignments server

Biological Process (BP): peptidoglycan biosynthetic process

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Root: GO Hierarchy Containing Three Sub-Ontologies (BP, MF, CC)

Shortest distance to current term (+ for parents, - for children) GO term [GO ID] <#Children> #High-quality
(SF|FA)
#Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   biological_process [GO:0008150] <20>
+ + + + + 5:   biosynthetic process [GO:0009058] <12>(155|191) (604|423|176)
+ + + + + 5:   cellular process [GO:0009987] <5>(380|506) (1135|1323|716)
+ + + + + 5:   nitrogen compound metabolic process [GO:0006807] <20>(166|208) (663|530|219)
+ + + + + 5:   organic substance metabolic process [GO:0071704] <41>(279|396) (940|986|455)
+ + + + + 5:   single-organism process [GO:0044699] <27>(245|275) (858|1038|615)
+ + + + 4:   carbohydrate derivative metabolic process [GO:1901135] <48>(57|69) (282|168|75)
+ + + + 4:   cellular biosynthetic process [GO:0044249] <45>(146|177) (577|406|175)
+ + + + 4:   cellular component organization or biogenesis [GO:0071840] <3>(115|124) (617|609|345)
+ + + + 4:   cellular metabolic process [GO:0044237] <41>(280|389) (937|939|428)
+ + + + 4:   macromolecule metabolic process [GO:0043170] <14>(174|227) (696|719|331)
+ + + + 4:   metabolic process [GO:0008152] <12>(303|433) (983|1047|501)
+ + + + 4:   organic substance biosynthetic process [GO:1901576] <36>(147|182) (587|411|174)
+ + + + 4:   organonitrogen compound metabolic process [GO:1901564] <64>(106|139) (446|315|140)
+ + + + 4:   single-organism cellular process [GO:0044763] <70>(213|238) (801|934|545)
+ + + 3:   aminoglycan metabolic process [GO:0006022] <5>(5|7) (46|21|7)
+ + + 3:   carbohydrate derivative biosynthetic process [GO:1901137] <41>(33|38) (158|76|34)
+ + + 3:   cell wall organization or biogenesis [GO:0071554] <5>(9|9) (84|42|13)
+ + + 3:   cellular component biogenesis [GO:0044085] <11>(55|60) (366|279|155)
+ + + 3:   cellular macromolecule biosynthetic process [GO:0034645] <15>(62|76) (326|204|87)
+ + + 3:   cellular macromolecule metabolic process [GO:0044260] <12>(159|205) (652|625|263)
+ + + 3:   macromolecule biosynthetic process [GO:0009059] <19>(65|79) (332|208|87)
+ + + 3:   organonitrogen compound biosynthetic process [GO:1901566] <52>(66|79) (255|153|64)
+ + + 3:   single-organism metabolic process [GO:0044710] <28>(156|210) (576|472|221)
+ + 2:   aminoglycan biosynthetic process [GO:0006023] <3>(3|3) (27|13|5)
+ + 2:   cell wall biogenesis [GO:0042546] <7>(5|2) (44|22|8)
+ + 2:   cell wall macromolecule metabolic process [GO:0044036] <7>(7|5) (41|20|6)
+ + 2:   cellular component macromolecule biosynthetic process [GO:0070589] <2>(4|2) (26|11|3)
+ + 2:   glycosaminoglycan metabolic process [GO:0030203] <10>(5|6) (33|16|6)
+ 1:   cell wall macromolecule biosynthetic process [GO:0044038] <6>(4|2) (26|10|3)
+ 1:   glycosaminoglycan biosynthetic process [GO:0006024] <8>(3|3) (19|11|4)
+ 1:   peptidoglycan metabolic process [GO:0000270] <3>(2|2) (14|8|2)
+ 1:   peptidoglycan-based cell wall biogenesis [GO:0009273] <5>(2|2) (20|13|5)
0:   peptidoglycan biosynthetic process [GO:0009252] <1>(1|1) (11|7|2)
- 1:   peptidoglycan-protein cross-linking [GO:0018104] <3>(0|0) (1|0|0)


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Superfamily

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SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
beta-lactamase/transpeptidase-like0.00014150Direct


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Family

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SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
beta-Lactamase/D-ala carboxypeptidase0.0001430Direct


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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
MurD-like peptide ligases, peptide-binding domain0Direct
Penicillin binding protein dimerisation domain0Direct
MurE/MurF N-terminal domain0Direct
beta-lactamase/transpeptidase-like0Direct
MurD-like peptide ligases, catalytic domain0Direct
MurCD N-terminal domain6.251e-14Direct
PreATP-grasp domain6.344e-06Direct
Penicillin-binding protein associated domain1.274e-05Direct
Glutathione synthetase ATP-binding domain-like0.0001206Direct
Lysozyme-like0.0005513Direct
L,D-transpeptidase catalytic domain-like0.001189Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
63418,53623
  • 63418 - MurE/MurF N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 0Direct
    56519,56601
  • 56519 - Penicillin binding protein dimerisation domain
  • 56601 - beta-lactamase/transpeptidase-like
  • 0Direct
    53623,53244
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 53244 - MurD-like peptide ligases, peptide-binding domain
  • 0Direct
    51984,53623
  • 51984 - MurCD N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 3.692e-14Direct
    53955,56601
  • 53955 - Lysozyme-like
  • 56601 - beta-lactamase/transpeptidase-like
  • 1.137e-11Direct
    52440,56059
  • 52440 - PreATP-grasp domain
  • 56059 - Glutathione synthetase ATP-binding domain-like
  • 3.171e-06Direct
    56601,69189
  • 56601 - beta-lactamase/transpeptidase-like
  • 69189 - Penicillin-binding protein associated domain
  • 1.274e-05Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    63418,53623,53244
  • 63418 - MurE/MurF N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 53244 - MurD-like peptide ligases, peptide-binding domain
  • 0Direct
    51984,53623,53244
  • 51984 - MurCD N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 53244 - MurD-like peptide ligases, peptide-binding domain
  • 3.692e-14Direct


    Plot distribution on phylogenetic tree for Individual Supra-domains annotated by this GO term
    Plot tree as:   Download Newick format tree:   Browsing in Tree_gateway:
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