SUPERFAMILY 1.75 HMM library and genome assignments server

Biological Process (BP): peptidoglycan biosynthetic process

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Root: GO Hierarchy Containing Three Sub-Ontologies (BP, MF, CC)

Shortest distance to current term (+ for parents, - for children) GO term [GO ID] <#Children> #High-quality
(SF|FA)
#Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   biological_process [GO:0008150] <20>
+ + + + + 5:   biosynthetic process [GO:0009058] <12>(156|192) (605|422|176)
+ + + + + 5:   cellular process [GO:0009987] <5>(380|506) (1134|1324|715)
+ + + + + 5:   nitrogen compound metabolic process [GO:0006807] <20>(164|206) (660|527|220)
+ + + + + 5:   organic substance metabolic process [GO:0071704] <41>(279|394) (936|981|452)
+ + + + + 5:   single-organism process [GO:0044699] <27>(243|275) (858|1037|610)
+ + + + 4:   carbohydrate derivative metabolic process [GO:1901135] <48>(57|69) (280|166|75)
+ + + + 4:   cellular biosynthetic process [GO:0044249] <45>(147|179) (577|405|175)
+ + + + 4:   cellular component organization or biogenesis [GO:0071840] <3>(116|125) (614|604|342)
+ + + + 4:   cellular metabolic process [GO:0044237] <41>(281|389) (933|935|426)
+ + + + 4:   macromolecule metabolic process [GO:0043170] <14>(175|227) (694|715|328)
+ + + + 4:   metabolic process [GO:0008152] <12>(302|432) (979|1042|498)
+ + + + 4:   organic substance biosynthetic process [GO:1901576] <36>(148|183) (588|410|174)
+ + + + 4:   organonitrogen compound metabolic process [GO:1901564] <64>(105|137) (445|314|140)
+ + + + 4:   single-organism cellular process [GO:0044763] <70>(212|238) (798|933|542)
+ + + 3:   aminoglycan metabolic process [GO:0006022] <5>(5|7) (46|21|7)
+ + + 3:   carbohydrate derivative biosynthetic process [GO:1901137] <41>(33|38) (158|76|34)
+ + + 3:   cell wall organization or biogenesis [GO:0071554] <5>(9|9) (82|40|12)
+ + + 3:   cellular component biogenesis [GO:0044085] <11>(57|60) (369|274|152)
+ + + 3:   cellular macromolecule biosynthetic process [GO:0034645] <15>(63|77) (325|203|87)
+ + + 3:   cellular macromolecule metabolic process [GO:0044260] <12>(161|206) (651|623|261)
+ + + 3:   macromolecule biosynthetic process [GO:0009059] <19>(66|80) (331|207|87)
+ + + 3:   organonitrogen compound biosynthetic process [GO:1901566] <52>(65|77) (254|153|64)
+ + + 3:   single-organism metabolic process [GO:0044710] <28>(156|210) (578|471|221)
+ + 2:   aminoglycan biosynthetic process [GO:0006023] <3>(3|3) (27|13|5)
+ + 2:   cell wall biogenesis [GO:0042546] <7>(5|2) (43|20|7)
+ + 2:   cell wall macromolecule metabolic process [GO:0044036] <7>(7|5) (41|20|6)
+ + 2:   cellular component macromolecule biosynthetic process [GO:0070589] <2>(4|2) (26|11|3)
+ + 2:   glycosaminoglycan metabolic process [GO:0030203] <10>(5|6) (33|16|6)
+ 1:   cell wall macromolecule biosynthetic process [GO:0044038] <6>(4|2) (26|10|3)
+ 1:   glycosaminoglycan biosynthetic process [GO:0006024] <8>(3|3) (19|11|4)
+ 1:   peptidoglycan metabolic process [GO:0000270] <3>(2|2) (14|8|2)
+ 1:   peptidoglycan-based cell wall biogenesis [GO:0009273] <5>(2|2) (19|12|5)
0:   peptidoglycan biosynthetic process [GO:0009252] <1>(1|1) (11|7|2)
- 1:   peptidoglycan-protein cross-linking [GO:0018104] <3>(0|0) (1|0|0)


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Superfamily

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SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
beta-lactamase/transpeptidase-like0.00014960Direct


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Family

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SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
beta-Lactamase/D-ala carboxypeptidase0.00015250Direct


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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
MurD-like peptide ligases, peptide-binding domain0Direct
Penicillin binding protein dimerisation domain0Direct
MurE/MurF N-terminal domain0Direct
beta-lactamase/transpeptidase-like0Direct
MurD-like peptide ligases, catalytic domain0Direct
MurCD N-terminal domain1.868e-14Direct
PreATP-grasp domain6.849e-06Direct
Penicillin-binding protein associated domain1.368e-05Direct
Glutathione synthetase ATP-binding domain-like0.0001237Direct
Lysozyme-like0.0006067Direct
L,D-transpeptidase catalytic domain-like0.00126Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
63418,53623
  • 63418 - MurE/MurF N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 0Direct
    56519,56601
  • 56519 - Penicillin binding protein dimerisation domain
  • 56601 - beta-lactamase/transpeptidase-like
  • 0Direct
    53623,53244
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 53244 - MurD-like peptide ligases, peptide-binding domain
  • 0Direct
    51984,53623
  • 51984 - MurCD N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 9.53e-15Direct
    53955,56601
  • 53955 - Lysozyme-like
  • 56601 - beta-lactamase/transpeptidase-like
  • 1.051e-11Direct
    52440,56059
  • 52440 - PreATP-grasp domain
  • 56059 - Glutathione synthetase ATP-binding domain-like
  • 3.459e-06Direct
    56601,69189
  • 56601 - beta-lactamase/transpeptidase-like
  • 69189 - Penicillin-binding protein associated domain
  • 1.368e-05Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    63418,53623,53244
  • 63418 - MurE/MurF N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 53244 - MurD-like peptide ligases, peptide-binding domain
  • 0Direct
    51984,53623,53244
  • 51984 - MurCD N-terminal domain
  • 53623 - MurD-like peptide ligases, catalytic domain
  • 53244 - MurD-like peptide ligases, peptide-binding domain
  • 9.53e-15Direct


    Plot distribution on phylogenetic tree for Individual Supra-domains annotated by this GO term
    Plot tree as:   Download Newick format tree:   Browsing in Tree_gateway:
    (show help)