SUPERFAMILY 1.75 HMM library and genome assignments server

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Biological Process (BP): endomembrane system organization

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Jump to [ Top · GO Hierarchy · Superfamily · Family · Supra-domain ]

Root: GO Hierarchy Containing Three Sub-Ontologies (BP, MF, CC)

Shortest distance to current term (+ for parents, - for children) GO term [GO ID] <#Children> #High-quality
(SF|FA)
#Supra-domain
(Single|Duplex|Triple)
+ + + 3:   biological_process [GO:0008150] <24>
+ + 2:   cellular component organization or biogenesis [GO:0071840] <2>(123|122) (647|619|358)
+ + 2:   cellular process [GO:0009987] <21>(372|486) (1162|1371|744)
+ 1:   cellular component organization [GO:0016043] <33>(113|104) (617|594|349)
0:   endomembrane system organization [GO:0010256] <7>(5|5) (90|51|23)
- 1:   plasma membrane organization [GO:0007009] <15>(3|3) (41|26|16)
- 1:   endoplasmic reticulum organization [GO:0007029] <7>(1|1) (12|7|5)
- 1:   nuclear envelope organization [GO:0006998] <7>(2|2) (12|4|1)
- 1:   secretory granule organization [GO:0033363] <7>(0|0) (6|1|0)
- 1:   Golgi organization [GO:0007030] <5>(1|2) (24|19|7)
- 1:   endosome organization [GO:0007032] <4>(0|0) (10|3|0)
- 1:   synaptic vesicle membrane organization [GO:0048499](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
Cu,Zn superoxide dismutase-like0.00000000000070280.000000000009422Direct
HAD-like0.00000059610.00004984Direct
P-loop containing nucleoside triphosphate hydrolases00.00001694Direct
Protein kinase-like (PK-like)0.043790.0164Inherited
EF-hand0.0032690.04253Inherited


Jump to [ Top · GO Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
Cu,Zn superoxide dismutase-like0.00000000000063770.000000000007848Direct
G proteins00Direct
NLI interacting factor-like phosphatase0.00000000000028320.0000000008416Direct
Protein kinases, catalytic subunit0.040220.0274Inherited
Calmodulin-like0.0021130.00006348Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this GO term
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Jump to [ Top · GO Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
BAR/IMD domain-like0Direct
LEM domain0Direct
RILP dimerisation region0Direct
Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain0.000000000000001898Direct
Sec7 domain0.000000000003104Direct
Cu,Zn superoxide dismutase-like0.000000000005296Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.00000000001025Direct
TNF-like0.0000000001667Direct
GLA-domain0.0000000008177Direct
SH3-domain0.000000001144Direct
PH domain-like0.000000001179Direct
HR1 repeat0.000000002769Direct
t-snare proteins0.00000001494Direct
Hook domain0.00000004176Direct
Ubiquitin-like0.0000001102Direct
PX domain0.0000001171Direct
MIT domain0.0000001424Direct
Supernatant protein factor (SPF), C-terminal domain0.0000003672Direct
DPP6 N-terminal domain-like0.000000641Direct
ARM repeat0.000001256Direct
NSFL1 (p97 ATPase) cofactor p47, SEP domain0.000001688Direct
Endosomal sorting complex assembly domain0.000003026Direct
Annexin0.000005183Direct
Hect, E3 ligase catalytic domain0.000008182Direct
P-loop containing nucleoside triphosphate hydrolases0.00001128Direct
Polo-box domain0.00001735Direct
DNase I-like0.00002172Direct
Zn-finger domain of Sec23/240.00003316Direct
HAD-like0.00003366Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0000389Direct
C-terminal autoproteolytic domain of nucleoporin nup980.00006439Direct
UBC-like0.00007089Direct
Helical domain of Sec23/240.00007839Direct
beta-sandwich domain of Sec23/240.0001507Direct
Clc chloride channel0.0001815Direct
Lamin A/C globular tail domain0.0002956Direct
BAG domain0.0002956Direct
Phospholipase D/nuclease0.0005122Direct
Dystroglycan, domain 20.0006222Direct
Cullin repeat-like0.0007288Direct
Glucocorticoid receptor-like (DNA-binding domain)1Inherited
S-adenosyl-L-methionine-dependent methyltransferases1Inherited
Tetraspanin0.003502Inherited
FYVE/PHD zinc finger0.9731Inherited
Sec1/munc18-like (SM) proteins0.003769Inherited
CBS-domain pair0.07066Inherited
Protein kinase-like (PK-like)0.01235Inherited
Formin homology 2 domain (FH2 domain)0.1522Inherited
SNARE fusion complex0.02458Inherited
"Winged helix" DNA-binding domain1Inherited
ENTH/VHS domain0.06154Inherited
Phospholipase A2, PLA20.001376Inherited
BEACH domain0.005621Inherited
Clathrin adaptor appendage domain0.008648Inherited
Serpins0.08881Inherited
p53-like transcription factors0.4984Inherited
Ankyrin repeat0.1831Inherited
Metallo-dependent phosphatases0.6342Inherited
Family A G protein-coupled receptor-like1Inherited
Tubby C-terminal domain-like0.002882Inherited
CAD & PB1 domains0.02022Inherited
C-terminal, gelsolin-like domain of Sec23/240.00327Inherited
vWA-like0.4048Inherited
Ypt/Rab-GAP domain of gyp1p0.002877Inherited
Cullin homology domain0.02742Inherited
Cysteine-rich domain0.04494Inherited
DBL homology domain (DH-domain)0.05349Inherited
Galactose mutarotase-like0.06254Inherited
Metal cation-transporting ATPase, ATP-binding domain N0.1606Inherited
PapD-like0.00785Inherited
EF-hand0.03282Inherited
Voltage-gated potassium channels0.03375Inherited
Moesin tail domain0.03436Inherited
POZ domain0.06659Inherited
DEATH domain0.2618Inherited
CRAL/TRIO N-terminal domain0.01313Inherited
CRAL/TRIO domain0.02742Inherited
Spectrin repeat0.0013Inherited
Calponin-homology domain, CH-domain0.0361Inherited
GAS2 domain-like0.4425Inherited
Cadherin-like0.2933Inherited
Growth factor receptor domain0.4256Inherited
Second domain of FERM0.7619Inherited
Cap-Gly domain0.1454Inherited
Nucleoporin domain0.001874Inherited
Intermediate filament protein, coiled coil region0.6652Inherited
RING/U-box0.668Inherited
B-box zinc-binding domain0.01236Inherited
Concanavalin A-like lectins/glucanases0.1214Inherited
Myosin rod fragments0.145Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
63451,63451
  • 63451 - LEM domain
  • 63451 - LEM domain
  • 0Direct
    52540,48340
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 48340 - Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
  • 0.000000000000001898Direct
    49562,49562
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0.00000000000000466Direct
    57630,57184
  • 57630 - GLA-domain
  • 57184 - Growth factor receptor domain
  • 0.0000000000001626Direct
    47874,47874
  • 47874 - Annexin
  • 47874 - Annexin
  • 0.00000000002753Direct
    56112,82615
  • 56112 - Protein kinase-like (PK-like)
  • 82615 - Polo-box domain
  • 0.0000000002362Direct
    82171,53474
  • 82171 - DPP6 N-terminal domain-like
  • 53474 - alpha/beta-Hydrolases
  • 0.0000000009546Direct
    116846,52540
  • 116846 - MIT domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.000000003406Direct
    50729,56024
  • 50729 - PH domain-like
  • 56024 - Phospholipase D/nuclease
  • 0.00000004801Direct
    82615,82615
  • 82615 - Polo-box domain
  • 82615 - Polo-box domain
  • 0.0000001424Direct
    48371,49785
  • 48371 - ARM repeat
  • 49785 - Galactose-binding domain-like
  • 0.000001688Direct
    63748,48371
  • 63748 - Tudor/PWWP/MBT
  • 48371 - ARM repeat
  • 0.000001688Direct
    54277,57850
  • 54277 - CAD & PB1 domains
  • 57850 - RING/U-box
  • 0.000001688Direct
    102848,54236
  • 102848 - NSFL1 (p97 ATPase) cofactor p47, SEP domain
  • 54236 - Ubiquitin-like
  • 0.000001688Direct
    46966,50044
  • 46966 - Spectrin repeat
  • 50044 - SH3-domain
  • 0.000002388Direct
    57184,49899
  • 57184 - Growth factor receptor domain
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.000008182Direct
    50729,74788
  • 50729 - PH domain-like
  • 74788 - Cullin repeat-like
  • 0.000008694Direct
    101288,101288
  • 101288 - L27 domain
  • 101288 - L27 domain
  • 0.00002576Direct
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.00002576Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0.00003316Direct
    56112,55073
  • 56112 - Protein kinase-like (PK-like)
  • 55073 - Nucleotide cyclase
  • 0.00003379Direct
    50044,46966
  • 50044 - SH3-domain
  • 46966 - Spectrin repeat
  • 0.00004834Direct
    47576,57716
  • 47576 - Calponin-homology domain, CH-domain
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00006439Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0.00007839Direct
    53300,81995
  • 53300 - vWA-like
  • 81995 - beta-sandwich domain of Sec23/24
  • 0.000153Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0001887Direct
    57630,57196
  • 57630 - GLA-domain
  • 57196 - EGF/Laminin
  • 0.0002271Direct
    57850,57845
  • 57850 - RING/U-box
  • 57845 - B-box zinc-binding domain
  • 0.0004741Direct
    49313,111006
  • 49313 - Cadherin-like
  • 111006 - Dystroglycan, domain 2
  • 0.0006222Direct
    81995,81811
  • 81995 - beta-sandwich domain of Sec23/24
  • 81811 - Helical domain of Sec23/24
  • 0.0006372Direct
    47661,58038
  • 47661 - t-snare proteins
  • 58038 - SNARE fusion complex
  • 0.0009549Direct
    103657,50044
  • 103657 - BAR/IMD domain-like
  • 50044 - SH3-domain
  • 0.001376Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 1Inherited
    49899,49899
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.002167Inherited
    48403,48403
  • 48403 - Ankyrin repeat
  • 48403 - Ankyrin repeat
  • 0.1288Inherited
    46785,46785
  • 46785 - "Winged helix" DNA-binding domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.00444Inherited
    50729,81837
  • 50729 - PH domain-like
  • 81837 - BEACH domain
  • 0.002599Inherited
    81995,82919
  • 81995 - beta-sandwich domain of Sec23/24
  • 82919 - Zn-finger domain of Sec23/24
  • 0.01644Inherited
    47923,47923
  • 47923 - Ypt/Rab-GAP domain of gyp1p
  • 47923 - Ypt/Rab-GAP domain of gyp1p
  • 0.001126Inherited
    50729,56112
  • 50729 - PH domain-like
  • 56112 - Protein kinase-like (PK-like)
  • 0.001154Inherited
    49562,48350
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48350 - GTPase activation domain, GAP
  • 0.001506Inherited
    57889,50729
  • 57889 - Cysteine-rich domain
  • 50729 - PH domain-like
  • 0.00785Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.01177Inherited
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.0535Inherited
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.1531Inherited
    47473,143575
  • 47473 - EF-hand
  • 143575 - GAS2 domain-like
  • 0.1033Inherited
    50044,52540
  • 50044 - SH3-domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.008396Inherited
    101288,50156
  • 101288 - L27 domain
  • 50156 - PDZ domain-like
  • 0.06025Inherited
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.5144Inherited
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.6849Inherited
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.5255Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57630,57196,57184
  • 57630 - GLA-domain
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0Direct
    63748,48371,49785
  • 63748 - Tudor/PWWP/MBT
  • 48371 - ARM repeat
  • 49785 - Galactose-binding domain-like
  • 0Direct
    57184,49899,49899
  • 57184 - Growth factor receptor domain
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.00000000001617Direct
    56112,82615,82615
  • 56112 - Protein kinase-like (PK-like)
  • 82615 - Polo-box domain
  • 82615 - Polo-box domain
  • 0.0000000002362Direct
    57630,57184,49899
  • 57630 - GLA-domain
  • 57184 - Growth factor receptor domain
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.000000001312Direct
    50044,46966,46966
  • 50044 - SH3-domain
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.00000001373Direct
    57630,57184,57196
  • 57630 - GLA-domain
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0.00000003993Direct
    46966,46966,50044
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 50044 - SH3-domain
  • 0.000002388Direct
    57184,57196,49899
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.00002576Direct
    101288,101288,50156
  • 101288 - L27 domain
  • 101288 - L27 domain
  • 50156 - PDZ domain-like
  • 0.00002576Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0000436Direct
    46966,50044,46966
  • 46966 - Spectrin repeat
  • 50044 - SH3-domain
  • 46966 - Spectrin repeat
  • 0.00004834Direct
    47576,57716,57716
  • 47576 - Calponin-homology domain, CH-domain
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00006439Direct
    82919,53300,81995
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 81995 - beta-sandwich domain of Sec23/24
  • 0.00008695Direct
    49562,49562,49562
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0.0003052Direct
    81995,81811,82754
  • 81995 - beta-sandwich domain of Sec23/24
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0.0006372Direct
    53300,81995,81811
  • 53300 - vWA-like
  • 81995 - beta-sandwich domain of Sec23/24
  • 81811 - Helical domain of Sec23/24
  • 0.0006372Direct
    81995,82919,53300
  • 81995 - beta-sandwich domain of Sec23/24
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0.01644Inherited
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.1531Inherited
    57196,57184,49899
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.008648Inherited
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.438Inherited
    101288,50156,50044
  • 101288 - L27 domain
  • 50156 - PDZ domain-like
  • 50044 - SH3-domain
  • 0.02914Inherited
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.3286Inherited


    Plot distribution on phylogenetic tree for Individual Supra-domains annotated by this GO term
    Plot tree as:   Download Newick format tree:   Browsing in Tree_gateway:
    (show help)