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Biological Process (BP): positive regulation of cytoskeleton organization

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Root: GO Hierarchy Containing Three Sub-Ontologies (BP, MF, CC)

Shortest distance to current term (+ for parents, - for children) GO term [GO ID] <#Children> #High-quality
(SF|FA)
#Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   biological_process [GO:0008150] <24>
+ + + + + + 6:   biological regulation [GO:0065007] <5>(165|190) (757|933|542)
+ + + + + 5:   regulation of biological process [GO:0050789] <34>(155|176) (709|883|505)
+ + + + 4:   positive regulation of biological process [GO:0048518] <49>(71|78) (455|481|286)
+ + + + 4:   regulation of cellular process [GO:0050794] <58>(138|154) (661|802|451)
+ + + 3:   positive regulation of cellular process [GO:0048522] <59>(61|67) (417|418|244)
+ + + 3:   regulation of cellular component organization [GO:0051128] <52>(35|32) (311|310|174)
+ + 2:   positive regulation of cellular component organization [GO:0051130] <56>(15|14) (188|162|93)
+ + 2:   regulation of organelle organization [GO:0033043] <27>(20|20) (194|151|67)
+ 1:   positive regulation of organelle organization [GO:0010638] <21>(9|8) (104|60|31)
+ 1:   regulation of cytoskeleton organization [GO:0051493] <6>(8|9) (93|71|36)
0:   positive regulation of cytoskeleton organization [GO:0051495] <15>(2|3) (38|29|18)
- 1:   positive regulation of actin filament polymerization [GO:0030838] <4>(2|2) (10|6|3)
- 1:   positive regulation of centrosome cycle [GO:0046607] <3>(0|0) (2|0|0)
- 1:   positive regulation of actin filament bundle assembly [GO:0032233] <2>(0|0) (12|13|8)
- 1:   positive regulation of actin filament depolymerization [GO:0030836] <2>(0|1) (5|3|3)
- 1:   positive regulation of microtubule polymerization or depolymerization [GO:0031112] <2>(0|0) (5|3|2)
- 1:   positive regulation of mitotic spindle organization [GO:0110028] <2>(0|0) (0|0|0)
- 1:   positive regulation of cytokinesis, actomyosin contractile ring assembly [GO:2000433] <1>(0|0) (0|0|0)
- 1:   positive regulation of myosin II filament organization [GO:1904901] <1>(0|0) (0|0|0)
- 1:   positive regulation of actin cytoskeleton reorganization [GO:2000251](0|0) (3|2|1)
- 1:   positive regulation of cardiac myofibril assembly [GO:1905306](0|0) (0|0|0)
- 1:   positive regulation of intermediate filament depolymerization [GO:0030844](0|0) (1|0|0)
- 1:   positive regulation of intermediate filament polymerization [GO:0030841](0|0) (0|0|0)
- 1:   positive regulation of sarcomere organization [GO:0060298](0|0) (2|0|0)
- 1:   positive regulation of spindle assembly [GO:1905832](0|0) (0|1|1)
- 1:   positive regulation of spindle pole body separation [GO:0010696](0|0) (1|1|0)


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Superfamily

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SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
Arp2/3 complex 21 kDa subunit ARPC30.0000000000034440.0000000001558Direct
Arp2/3 complex subunits0.000000000010050.0000002359Direct


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Family

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SCOP termFDR (singleton)FDR (all)Annotation (direct or inherited)
Arp2/3 complex 21 kDa subunit ARPC30.0000000000094890.000000000279Direct
Arp2/3 complex subunits0.000000000022270.0000002651Direct
Cofilin-like0.048030.07647Inherited


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Jump to [ Top · GO Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Formin homology 2 domain (FH2 domain)0Direct
Arp2/3 complex 21 kDa subunit ARPC30.00000000008953Direct
Lipoxigenase0.0000000001553Direct
Arp2/3 complex 16 kDa subunit ARPC50.000000001308Direct
Actin-like ATPase domain0.00000000175Direct
PH domain-like0.00000008699Direct
DBL homology domain (DH-domain)0.00000008996Direct
Arp2/3 complex subunits0.000000148Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0000003128Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0000003128Direct
Lipase/lipooxygenase domain (PLAT/LH2 domain)0.00001191Direct
RNI-like0.00005303Direct
Intermediate filament protein, coiled coil region0.0002064Direct
Interleukin 8-like chemokines0.0002173Direct
C-terminal, gelsolin-like domain of Sec23/240.0002378Direct
G protein-binding domain0.0005844Direct
NHL repeat0.0006605Direct
Protein kinase-like (PK-like)0.0008051Direct
Polo-box domain0.0008702Direct
Vasodilator-stimulated phosphoprotein, VASP, tetramerisation domain0.0009189Direct
Ras GEF0.0009189Direct
SH2 domain0.006415Inherited
SH3-domain0.03273Inherited
BAR/IMD domain-like0.6547Inherited
ARM repeat0.001007Inherited
Galactose-binding domain-like0.001261Inherited
cAMP-binding domain-like0.03272Inherited
Growth factor receptor domain0.09206Inherited
Fibronectin type III0.004444Inherited
VHP, Villin headpiece domain0.05386Inherited
Cap-Gly domain0.05386Inherited
Cytochrome P4500.09312Inherited
FAT domain of focal adhesion kinase0.003859Inherited
TSP-1 type 1 repeat0.003499Inherited
Plexin repeat0.01631Inherited
Sema domain0.02505Inherited
HAD-like0.3067Inherited
Cyclin-like0.1775Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
103652,50729
  • 103652 - G protein-binding domain
  • 50729 - PH domain-like
  • 0Direct
    69645,69645
  • 69645 - Arp2/3 complex subunits
  • 69645 - Arp2/3 complex subunits
  • 0.0000000000003811Direct
    82754,82754
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0.000000000003575Direct
    49723,48484
  • 49723 - Lipase/lipooxygenase domain (PLAT/LH2 domain)
  • 48484 - Lipoxigenase
  • 0.00000000006478Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.0000000001206Direct
    55753,47050
  • 55753 - Actin depolymerizing proteins
  • 47050 - VHP, Villin headpiece domain
  • 0.000000000677Direct
    46785,51206
  • 46785 - "Winged helix" DNA-binding domain
  • 51206 - cAMP-binding domain-like
  • 0.00000002146Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.00000003408Direct
    103575,82895
  • 103575 - Plexin repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.00000003745Direct
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.0000002102Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0000003128Direct
    48371,101447
  • 48371 - ARM repeat
  • 101447 - Formin homology 2 domain (FH2 domain)
  • 0.0000009272Direct
    54236,48366
  • 54236 - Ubiquitin-like
  • 48366 - Ras GEF
  • 0.00000325Direct
    52047,52047
  • 52047 - RNI-like
  • 52047 - RNI-like
  • 0.00008899Direct
    55753,82754
  • 55753 - Actin depolymerizing proteins
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0.0002378Direct
    82754,55753
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 55753 - Actin depolymerizing proteins
  • 0.0002378Direct
    50729,57889
  • 50729 - PH domain-like
  • 57889 - Cysteine-rich domain
  • 0.0005844Direct
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.0005999Direct
    57184,49265
  • 57184 - Growth factor receptor domain
  • 49265 - Fibronectin type III
  • 0.0009189Direct
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.02968Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.2913Inherited
    56112,47769
  • 56112 - Protein kinase-like (PK-like)
  • 47769 - SAM/Pointed domain
  • 0.001099Inherited
    49785,57184
  • 49785 - Galactose-binding domain-like
  • 57184 - Growth factor receptor domain
  • 0.003541Inherited
    55753,55753
  • 55753 - Actin depolymerizing proteins
  • 55753 - Actin depolymerizing proteins
  • 0.06107Inherited
    47986,47986
  • 47986 - DEATH domain
  • 47986 - DEATH domain
  • 0.003859Inherited
    50729,56112
  • 50729 - PH domain-like
  • 56112 - Protein kinase-like (PK-like)
  • 0.2469Inherited
    82895,82895
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.003414Inherited
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.01454Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.1096Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    103652,50729,57889
  • 103652 - G protein-binding domain
  • 50729 - PH domain-like
  • 57889 - Cysteine-rich domain
  • 0Direct
    55753,82754,82754
  • 55753 - Actin depolymerizing proteins
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0.000000000003575Direct
    82754,82754,55753
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 55753 - Actin depolymerizing proteins
  • 0.000000000003575Direct
    55753,55753,47050
  • 55753 - Actin depolymerizing proteins
  • 55753 - Actin depolymerizing proteins
  • 47050 - VHP, Villin headpiece domain
  • 0.000000000677Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.00000003408Direct
    101912,103575,82895
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.00000003745Direct
    103575,82895,82895
  • 103575 - Plexin repeat
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.00000003745Direct
    50044,50044,55550
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.00000009248Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0000003128Direct
    50044,50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.00001033Direct
    52540,52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00005883Direct
    82754,55753,55753
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 55753 - Actin depolymerizing proteins
  • 55753 - Actin depolymerizing proteins
  • 0.0007774Direct
    49785,57184,49265
  • 49785 - Galactose-binding domain-like
  • 57184 - Growth factor receptor domain
  • 49265 - Fibronectin type III
  • 0.0009189Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.05845Inherited
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.01971Inherited
    55753,55753,55753
  • 55753 - Actin depolymerizing proteins
  • 55753 - Actin depolymerizing proteins
  • 55753 - Actin depolymerizing proteins
  • 0.02968Inherited
    47031,50729,56112
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 56112 - Protein kinase-like (PK-like)
  • 0.003859Inherited
    82895,82895,82895
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.001403Inherited


    Plot distribution on phylogenetic tree for Individual Supra-domains annotated by this GO term
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