SUPERFAMILY 1.75 HMM library and genome assignments server

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MCP/YpsA-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 7 SUPERFAMILY models representing the MCP/YpsA-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0043844 392 2005-09-08 d1t35a_ MoCo carrier protein-like
0050465 1650 2008-09-10 d1weka_ MoCo carrier protein-like
0053291 1234 2008-09-10 d2q4oa1 MoCo carrier protein-like
0043198 242 2005-09-08 d1rcua_ MoCo carrier protein-like
0050464 1253 2008-09-10 d1weha_ MoCo carrier protein-like
0053289 1226 2008-09-10 d2q4da1 MoCo carrier protein-like
0054305 157 2010-05-31 d2nx2a1 YpsA-like