SUPERFAMILY 1.75 HMM library and genome assignments server

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BAR/IMD domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 8 SUPERFAMILY models representing the BAR/IMD domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047298 87 2008-09-10 d1i4da_ Arfaptin, Rac-binding fragment
0050766 761 2008-09-10 d1x04a1 BAR domain
0053888 475 2010-05-31 d2elba1 BAR domain
0052378 194 2008-09-10 d2d4ca1 BAR domain
0049984 463 2008-09-10 d1urua_ BAR domain
0051188 294 2008-09-10 d1y2oa1 IMD domain
0053884 626 2010-05-31 d2efka1 FCH domain
0053885 721 2010-05-31 d2efla1 FCH domain