SUPERFAMILY 1.75 HMM library and genome assignments server

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Cyclin-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 26 SUPERFAMILY models representing the Cyclin-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0037918 3 2005-09-08 d1g3nc2 Cyclin
0054089 1288 2010-05-31 d2i53a1 Cyclin
0035706 12 2005-09-08 d1bu2a2 Cyclin
0039746 307 2005-09-08 d1jsub2 Cyclin
0052578 1570 2008-09-10 d2f2ca1 Cyclin
0054835 999 2010-05-31 d3blhb2 Cyclin
0047613 74 2008-09-10 d1jkwa2 Cyclin
0054161 1286 2010-05-31 d2ivxa1 Cyclin
0037917 560 2005-09-08 d1g3nc1 Cyclin
0053625 1760 2010-05-31 d1w98b2 Cyclin
0039605 364 2005-09-08 d1jkwa1 Cyclin
0052145 2083 2008-09-10 d2cchb1 Cyclin
0054834 429 2010-05-31 d3blhb1 Cyclin
0046712 895 2008-09-10 d1f5qb1 Cyclin
0054090 516 2010-05-31 d2i53a2 Cyclin
0037400 2 2005-09-08 d1f5qb2 Cyclin
0053624 154 2010-05-31 d1w98b1 Cyclin
0038414 18 2005-09-08 d1h4ld_ Cyclin
0050198 371 2008-09-10 d1vina2 Cyclin
0054162 462 2010-05-31 d2ivxa2 Cyclin
0045780 867 2008-09-10 d1aisb2 Transcription factor IIB (TFIIB), core domain
0044902 591 2005-09-08 d1vola2 Transcription factor IIB (TFIIB), core domain
0035065 390 2005-09-08 d1aisb1 Transcription factor IIB (TFIIB), core domain
0044901 471 2005-09-08 d1vola1 Transcription factor IIB (TFIIB), core domain
0038276 239 2005-09-08 d1guxb_ Retinoblastoma tumor suppressor domains
0038275 61 2005-09-08 d1guxa_ Retinoblastoma tumor suppressor domains