SUPERFAMILY 1.75 HMM library and genome assignments server

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Heme-dependent peroxidases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 27 SUPERFAMILY models representing the Heme-dependent peroxidases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0039285 820 2005-09-08 d1iyna_ CCP-like
0043547 626 2005-09-08 d1scha_ CCP-like
0037585 709 2005-09-08 d1fhfa_ CCP-like
0042217 781 2005-09-08 d1pa2a_ CCP-like
0045642 783 2005-09-08 d7atja_ CCP-like
0035161 823 2005-09-08 d1apxa_ CCP-like
0051443 2392 2008-09-10 d1yyda1 CCP-like
0042916 375 2005-09-08 d1qpaa_ CCP-like
0035542 771 2005-09-08 d1bgpa_ CCP-like
0041762 822 2005-09-08 d1oafa_ CCP-like
0052523 2904 2008-09-10 d2euta1 CCP-like
0040547 373 2005-09-08 d1llpa_ CCP-like
0042766 738 2005-09-08 d1qgja_ CCP-like
0035393 404 2005-09-08 d1b80a_ CCP-like
0052494 1315 2008-09-10 d2e3ba1 CCP-like
0046365 734 2008-09-10 d1dnu.1 Myeloperoxidase-like
0046223 167 2008-09-10 d1cvua1 Myeloperoxidase-like
0046200 185 2008-09-10 d1cqea1 Myeloperoxidase-like
0041121 508 2005-09-08 d1mwva1 Catalase-peroxidase KatG
0043633 337 2005-09-08 d1sj2a2 Catalase-peroxidase KatG
0039189 365 2005-09-08 d1itka2 Catalase-peroxidase KatG
0044251 330 2005-09-08 d1ub2a2 Catalase-peroxidase KatG
0043632 437 2005-09-08 d1sj2a1 Catalase-peroxidase KatG
0049776 1668 2008-09-10 d1u2ka_ Catalase-peroxidase KatG
0039188 533 2005-09-08 d1itka1 Catalase-peroxidase KatG
0041122 337 2005-09-08 d1mwva2 Catalase-peroxidase KatG
0044250 556 2005-09-08 d1ub2a1 Catalase-peroxidase KatG