SUPERFAMILY 1.75 HMM library and genome assignments server

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Nuclear receptor ligand-binding domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 38 SUPERFAMILY models representing the Nuclear receptor ligand-binding domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0034841 890 2005-09-08 d1a28a_ Nuclear receptor ligand-binding domain
0038584 897 2005-09-08 d1hg4a_ Nuclear receptor ligand-binding domain
0041290 782 2005-09-08 d1nava_ Nuclear receptor ligand-binding domain
0042831 885 2005-09-08 d1qkma_ Nuclear receptor ligand-binding domain
0045508 859 2005-09-08 d3erda_ Nuclear receptor ligand-binding domain
0037660 1040 2005-09-08 d1fm9a_ Nuclear receptor ligand-binding domain
0040276 997 2005-09-08 d1kv6a_ Nuclear receptor ligand-binding domain
0042191 893 2005-09-08 d1p8da_ Nuclear receptor ligand-binding domain
0045026 950 2005-09-08 d1xb7a_ Nuclear receptor ligand-binding domain
0054633 2082 2010-05-31 d2qw4a1 Nuclear receptor ligand-binding domain
0036330 875 2005-09-08 d1db1a_ Nuclear receptor ligand-binding domain
0039072 513 2005-09-08 d1ilga_ Nuclear receptor ligand-binding domain
0042006 930 2005-09-08 d1osha_ Nuclear receptor ligand-binding domain
0043092 836 2005-09-08 d1r1kd_ Nuclear receptor ligand-binding domain
0050898 3449 2008-09-10 d1xapa_ Nuclear receptor ligand-binding domain
0038502 1043 2005-09-08 d1h9ua_ Nuclear receptor ligand-binding domain
0041251 681 2005-09-08 d1n83a_ Nuclear receptor ligand-binding domain
0042350 986 2005-09-08 d1pk5a_ Nuclear receptor ligand-binding domain
0045423 67 2005-09-08 d2prga_ Nuclear receptor ligand-binding domain
0037497 866 2005-09-08 d1fcya_ Nuclear receptor ligand-binding domain
0039946 51 2005-09-08 d1k7la_ Nuclear receptor ligand-binding domain
0042042 741 2005-09-08 d1ovle_ Nuclear receptor ligand-binding domain
0044364 834 2005-09-08 d1uhlb_ Nuclear receptor ligand-binding domain
0051122 3461 2008-09-10 d1xvpb_ Nuclear receptor ligand-binding domain
0035697 812 2005-09-08 d1bsxa_ Nuclear receptor ligand-binding domain
0038857 830 2005-09-08 d1i37a_ Nuclear receptor ligand-binding domain
0041397 873 2005-09-08 d1nhza_ Nuclear receptor ligand-binding domain
0042832 887 2005-09-08 d1qkna_ Nuclear receptor ligand-binding domain
0048850 3788 2008-09-10 d1pzla_ Nuclear receptor ligand-binding domain
0037904 986 2005-09-08 d1g2na_ Nuclear receptor ligand-binding domain
0040676 1079 2005-09-08 d1lv2a_ Nuclear receptor ligand-binding domain
0042270 786 2005-09-08 d1pdua_ Nuclear receptor ligand-binding domain
0045306 750 2005-09-08 d2gwxa_ Nuclear receptor ligand-binding domain
0036469 857 2005-09-08 d1dkfb_ Nuclear receptor ligand-binding domain
0039913 556 2005-09-08 d1k4wa_ Nuclear receptor ligand-binding domain
0042011 926 2005-09-08 d1osva_ Nuclear receptor ligand-binding domain
0043281 692 2005-09-08 d1rkga_ Nuclear receptor ligand-binding domain
0051039 3337 2008-09-10 d1xnxa_ Nuclear receptor ligand-binding domain