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Composite domain of metallo-dependent hydrolases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 33 SUPERFAMILY models representing the Composite domain of metallo-dependent hydrolases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0037043 426 2005-09-08 d1ejrc1 alpha-Subunit of urease
0046499 14 2008-09-10 d1e9yb1 alpha-Subunit of urease
0053352 12 2008-09-10 d4ubpc1 alpha-Subunit of urease
0039933 144 2005-09-08 d1k6wa1 Cytosine deaminase
0053590 500 2010-05-31 d1k1da1 Hydantoinase (dihydropyrimidinase)
0052788 399 2008-09-10 d2fvka1 Hydantoinase (dihydropyrimidinase)
0051352 750 2008-09-10 d1ynya1 Hydantoinase (dihydropyrimidinase)
0040031 254 2005-09-08 d1kcxa1 Hydantoinase (dihydropyrimidinase)
0047005 2384 2008-09-10 d1gkra1 Hydantoinase (dihydropyrimidinase)
0052759 11 2008-09-10 d2ftwa1 Hydantoinase (dihydropyrimidinase)
0041367 13 2005-09-08 d1nfga1 Hydantoinase (dihydropyrimidinase)
0053644 9753 2010-05-31 d1xrta1 Hydantoinase (dihydropyrimidinase)
0047004 1960 2008-09-10 d1gkpa1 Hydantoinase (dihydropyrimidinase)
0047518 451 2008-09-10 d1j6pa1 SAH/MTA deaminase-like
0054393 53 2010-05-31 d2ooda1 SAH/MTA deaminase-like
0054488 500 2010-05-31 d2paja1 SAH/MTA deaminase-like
0054687 500 2010-05-31 d2uz9a1 SAH/MTA deaminase-like
0054112 24 2010-05-31 d2i9ua1 SAH/MTA deaminase-like
0041659 3 2005-09-08 d1o12a1 N-acetylglucosamine-6-phosphate deacetylase, NagA
0044456 240 2005-09-08 d1un7a1 N-acetylglucosamine-6-phosphate deacetylase, NagA
0051378 630 2008-09-10 d1yrra1 N-acetylglucosamine-6-phosphate deacetylase, NagA
0040833 511 2005-09-08 d1m7ja1 D-aminoacylase
0048114 347 2008-09-10 d1m7ja2 D-aminoacylase
0041948 136 2005-09-08 d1onwa1 Isoaspartyl dipeptidase
0053092 582 2008-09-10 d2icsa1 Adenine deaminase
0054825 500 2010-05-31 d3be7a1 Zn-dependent arginine carboxypeptidase-like
0054627 1711 2010-05-31 d2qs8a1 Zn-dependent arginine carboxypeptidase-like
0054657 500 2010-05-31 d2r8ca1 Zn-dependent arginine carboxypeptidase-like
0054548 500 2010-05-31 d2puza1 Imidazolonepropionase-like
0053741 500 2010-05-31 d2bb0a1 Imidazolonepropionase-like
0054567 185 2010-05-31 d2q09a1 Imidazolonepropionase-like
0054483 500 2010-05-31 d2p9ba1 Imidazolonepropionase-like
0054147 109 2010-05-31 d2imra1 DR0824-like