SUPERFAMILY 1.75 HMM library and genome assignments server

Please note: Superfamily is currently under maintenance and some functionality may be limited. Please bear with us as we fix these problems.

NAD(P)-linked oxidoreductase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 21 SUPERFAMILY models representing the NAD(P)-linked oxidoreductase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047367 6460 2008-09-10 d1ihia_ Aldo-keto reductases (NADP)
0046225 6337 2008-09-10 d1cwna_ Aldo-keto reductases (NADP)
0051795 6342 2008-09-10 d2alra_ Aldo-keto reductases (NADP)
0048892 6354 2008-09-10 d1q5ma_ Aldo-keto reductases (NADP)
0048014 6510 2008-09-10 d1lqaa_ Aldo-keto reductases (NADP)
0046848 6277 2008-09-10 d1frba_ Aldo-keto reductases (NADP)
0045771 5975 2008-09-10 d1afsa_ Aldo-keto reductases (NADP)
0049299 6335 2008-09-10 d1s1pa_ Aldo-keto reductases (NADP)
0048562 3782 2008-09-10 d1og6a_ Aldo-keto reductases (NADP)
0047249 6612 2008-09-10 d1hw6a_ Aldo-keto reductases (NADP)
0046098 6183 2008-09-10 d1c9wa_ Aldo-keto reductases (NADP)
0050262 6646 2008-09-10 d1vp5a_ Aldo-keto reductases (NADP)
0048846 4730 2008-09-10 d1pz1a_ Aldo-keto reductases (NADP)
0047570 6376 2008-09-10 d1jeza_ Aldo-keto reductases (NADP)
0046647 3364 2008-09-10 d1exba_ Aldo-keto reductases (NADP)
0049058 6539 2008-09-10 d1qwka_ Aldo-keto reductases (NADP)
0048247 6665 2008-09-10 d1mzra_ Aldo-keto reductases (NADP)
0047069 6094 2008-09-10 d1gvea_ Aldo-keto reductases (NADP)
0045776 6311 2008-09-10 d1ah4a_ Aldo-keto reductases (NADP)
0049985 6199 2008-09-10 d1us0a_ Aldo-keto reductases (NADP)
0048842 6784 2008-09-10 d1pyfa_ Aldo-keto reductases (NADP)