SUPERFAMILY 1.75 HMM library and genome assignments server

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Phosphoglycerate kinase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 9 SUPERFAMILY models representing the Phosphoglycerate kinase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0042321 390 2005-09-08 d1phpa_ Phosphoglycerate kinase
0034787 390 2005-09-08 d16pka_ Phosphoglycerate kinase
0044642 390 2005-09-08 d1v6sa_ Phosphoglycerate kinase
0038550 390 2005-09-08 d1hdia_ Phosphoglycerate kinase
0040654 390 2005-09-08 d1ltka_ Phosphoglycerate kinase
0042919 390 2005-09-08 d1qpga_ Phosphoglycerate kinase
0037808 732 2005-09-08 d1fw8a_ Phosphoglycerate kinase
0044903 390 2005-09-08 d1vpea_ Phosphoglycerate kinase
0040047 390 2005-09-08 d1kf0a_ Phosphoglycerate kinase