SUPERFAMILY 1.75 HMM library and genome assignments server

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Immunoglobulin-binding domains superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 15 SUPERFAMILY models representing the Immunoglobulin-binding domains superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046754 67 2008-09-10 d1fcla_ Immunoglobulin-binding domains
0048158 67 2008-09-10 d1mi0a_ Immunoglobulin-binding domains
0047800 27 2008-09-10 d1kh0a_ Immunoglobulin-binding domains
0053281 27 2008-09-10 d2ptla_ Immunoglobulin-binding domains
0046955 67 2008-09-10 d1gb4a_ Immunoglobulin-binding domains
0048754 67 2008-09-10 d1pgba_ Immunoglobulin-binding domains
0046588 67 2008-09-10 d1em7a_ Immunoglobulin-binding domains
0048156 67 2008-09-10 d1mhxa_ Immunoglobulin-binding domains
0047749 27 2008-09-10 d1k52a_ Immunoglobulin-binding domains
0053109 67 2008-09-10 d2igga_ Immunoglobulin-binding domains
0046757 67 2008-09-10 d1fd6a_ Immunoglobulin-binding domains
0048229 67 2008-09-10 d1mvka_ Immunoglobulin-binding domains
0048155 27 2008-09-10 d1mhhe_ Immunoglobulin-binding domains
0047628 27 2008-09-10 d1jmla_ Immunoglobulin-binding domains
0048762 67 2008-09-10 d1pgxa_ Immunoglobulin-binding domains