SUPERFAMILY 1.75 HMM library and genome assignments server

UBC-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 42 SUPERFAMILY models representing the UBC-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0051297 1285 2008-09-10 d1yf9a1 UBC-related
0047549 1400 2008-09-10 d1jata_ UBC-related
0045484 952 2005-09-08 d2ucza_ UBC-related
0044227 948 2005-09-08 d1u9aa_ UBC-related
0039447 961 2005-09-08 d1jasa_ UBC-related
0052596 1619 2008-09-10 d2f4wa1 UBC-related
0051700 2799 2008-09-10 d2a4da1 UBC-related
0051310 1307 2008-09-10 d1yh6a1 UBC-related
0049978 1444 2008-09-10 d1ur6a_ UBC-related
0046890 1384 2008-09-10 d1fzya_ UBC-related
0054300 2623 2010-05-31 d2nvuc1 UBC-related
0052733 1315 2008-09-10 d2fo3a1 UBC-related
0051843 1552 2008-09-10 d2awfa1 UBC-related
0051478 1445 2008-09-10 d1z2ua1 UBC-related
0051215 1424 2008-09-10 d1y6la_ UBC-related
0047527 1386 2008-09-10 d1j7db_ UBC-related
0045252 982 2005-09-08 d2e2ca_ UBC-related
0042708 816 2005-09-08 d1qcqa_ UBC-related
0038907 952 2005-09-08 d1i7ka_ UBC-related
0051962 3230 2008-09-10 d2bepa1 UBC-related
0051649 1408 2008-09-10 d1zuoa1 UBC-related
0051309 1423 2008-09-10 d1yh2a1 UBC-related
0048879 1412 2008-09-10 d1q34a_ UBC-related
0045844 1442 2008-09-10 d1ayza_ UBC-related
0039449 830 2005-09-08 d1jatb_ UBC-related
0052597 3220 2008-09-10 d2f4za1 UBC-related
0051720 1386 2008-09-10 d2a7la1 UBC-related
0051380 1417 2008-09-10 d1yrva1 UBC-related
0050764 3294 2008-09-10 d1wzva1 UBC-related
0047526 2742 2008-09-10 d1j7da_ UBC-related
0045144 916 2005-09-08 d2aaka_ UBC-related
0042542 936 2005-09-08 d1pzva_ UBC-related
0035854 962 2005-09-08 d1c4zd_ UBC-related
0051858 1415 2008-09-10 d2ayva1 UBC-related
0051563 1422 2008-09-10 d1zdna1 UBC-related
0044580 387 2005-09-08 d1uzxa_ UEV domain
0040200 346 2005-09-08 d1kppa_ UEV domain
0053811 179 2010-05-31 d2daxa1 RWD domain
0053810 93 2010-05-31 d2dawa1 RWD domain
0044417 590 2005-09-08 d1ukxa_ RWD domain
0053812 441 2010-05-31 d2daya1 RWD domain
0053118 308 2008-09-10 d2in1a1 UFC1-like