SUPERFAMILY 1.75 HMM library and genome assignments server

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POZ domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 12 SUPERFAMILY models representing the POZ domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035720 1555 2005-09-08 d1buoa_ BTB/POZ domain
0043098 1620 2005-09-08 d1r29a_ BTB/POZ domain
0041351 167 2005-09-08 d1nexa2 BTB/POZ domain
0037753 174 2005-09-08 d1fs1b2 BTB/POZ domain
0040560 37 2005-09-08 d1lm8c_ BTB/POZ domain
0038738 29 2005-09-08 d1hv2a_ BTB/POZ domain
0045530 512 2005-09-08 d3kvta_ Tetramerization domain of potassium channels
0042727 440 2005-09-08 d1qdva_ Tetramerization domain of potassium channels
0037241 457 2005-09-08 d1exbe_ Tetramerization domain of potassium channels
0043834 446 2005-09-08 d1t1da_ Tetramerization domain of potassium channels
0041467 556 2005-09-08 d1nn7a_ Tetramerization domain of potassium channels
0049297 637 2008-09-10 d1s1ga_ Tetramerization domain of potassium channels