SUPERFAMILY 1.75 HMM library and genome assignments server

EF-G C-terminal domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 11 SUPERFAMILY models representing the EF-G C-terminal domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048254 1388 2008-09-10 d1n0ua5 EF-G/eEF-2 domains III and V
0052057 4221 2008-09-10 d2bv3a5 EF-G/eEF-2 domains III and V
0050451 3979 2008-09-10 d1wdta4 EF-G/eEF-2 domains III and V
0048253 3283 2008-09-10 d1n0ua4 EF-G/eEF-2 domains III and V
0052056 4225 2008-09-10 d2bv3a4 EF-G/eEF-2 domains III and V
0046824 4299 2008-09-10 d1fnma4 EF-G/eEF-2 domains III and V
0050452 4574 2008-09-10 d1wdta5 EF-G/eEF-2 domains III and V
0052324 8 2008-09-10 d2cvea2 YigZ C-terminal domain-like
0050192 201 2008-09-10 d1vi7a2 YigZ C-terminal domain-like
0049572 95 2008-09-10 d1t95a3 Hypothetical protein AF0491, C-terminal domain
0048719 144 2008-09-10 d1p9qc3 Hypothetical protein AF0491, C-terminal domain