SUPERFAMILY 1.75 HMM library and genome assignments server

Bacterial exopeptidase dimerisation domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 8 SUPERFAMILY models representing the Bacterial exopeptidase dimerisation domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0051475 1512 2008-09-10 d1z2la2 Bacterial exopeptidase dimerisation domain
0043110 406 2005-09-08 d1r3na2 Bacterial exopeptidase dimerisation domain
0047972 345 2008-09-10 d1lfwa2 Bacterial exopeptidase dimerisation domain
0051390 1980 2008-09-10 d1ysja2 Bacterial exopeptidase dimerisation domain
0037689 284 2005-09-08 d1fnoa3 Bacterial exopeptidase dimerisation domain
0053285 1910 2008-09-10 d2q43a2 Bacterial exopeptidase dimerisation domain
0046135 3237 2008-09-10 d1cg2a2 Bacterial exopeptidase dimerisation domain
0050177 2757 2008-09-10 d1vgya2 Bacterial exopeptidase dimerisation domain