SUPERFAMILY 1.75 HMM library and genome assignments server

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Methyl-coenzyme M reductase subunits superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 9 SUPERFAMILY models representing the Methyl-coenzyme M reductase subunits superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046475 53 2008-09-10 d1e6vc_ Methyl-coenzyme M reductase gamma chain
0036811 18 2005-09-08 d1e6yc_ Methyl-coenzyme M reductase gamma chain
0048214 53 2008-09-10 d1mroc_ Methyl-coenzyme M reductase gamma chain
0046473 550 2008-09-10 d1e6va2 Methyl-coenzyme M reductase alpha and beta chain N-terminal domain
0048212 548 2008-09-10 d1mroa2 Methyl-coenzyme M reductase alpha and beta chain N-terminal domain
0046477 57 2008-09-10 d1e6yb2 Methyl-coenzyme M reductase alpha and beta chain N-terminal domain
0046474 57 2008-09-10 d1e6vb2 Methyl-coenzyme M reductase alpha and beta chain N-terminal domain
0048213 57 2008-09-10 d1mrob2 Methyl-coenzyme M reductase alpha and beta chain N-terminal domain
0046476 546 2008-09-10 d1e6ya2 Methyl-coenzyme M reductase alpha and beta chain N-terminal domain