SUPERFAMILY 1.75 HMM library and genome assignments server

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HAD-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 63 SUPERFAMILY models representing the HAD-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045131 1669 2005-09-08 d1zrna_ HAD-related
0042929 1227 2005-09-08 d1qq5a_ HAD-related
0050797 6390 2008-09-10 d1x42a1 HAD-related
0046572 5974 2008-09-10 d1ek1a1 YihX-like
0051870 4167 2008-09-10 d2b0ca1 YihX-like
0044796 1113 2005-09-08 d1vj5a1 YihX-like
0052698 4544 2008-09-10 d2fi1a1 Phosphonoacetaldehyde hydrolase-like
0037518 484 2005-09-08 d1feza_ Phosphonoacetaldehyde hydrolase-like
0048396 4073 2008-09-10 d1nnla_ Phosphoserine phosphatase
0047540 9239 2008-09-10 d1j97a_ Phosphoserine phosphatase
0047721 2235 2008-09-10 d1k1ea_ Probable phosphatase YrbI
0051764 5401 2008-09-10 d2ah5a1 beta-Phosphoglucomutase-like
0052660 2524 2008-09-10 d2fdra1 beta-Phosphoglucomutase-like
0053003 4016 2008-09-10 d2hcfa1 beta-Phosphoglucomutase-like
0053041 5774 2008-09-10 d2hsza1 beta-Phosphoglucomutase-like
0052933 5666 2008-09-10 d2go7a1 beta-Phosphoglucomutase-like
0043957 1657 2005-09-08 d1te2a_ beta-Phosphoglucomutase-like
0053006 6263 2008-09-10 d2hdoa1 beta-Phosphoglucomutase-like
0052884 5841 2008-09-10 d2gfha1 beta-Phosphoglucomutase-like
0040685 1454 2005-09-08 d1lvha_ beta-Phosphoglucomutase-like
0043763 2467 2005-09-08 d1su4a2 Meta-cation ATPase, catalytic domain P
0051937 11733 2008-09-10 d2b8ea1 Meta-cation ATPase, catalytic domain P
0040925 179 2005-09-08 d1mh9a_ 5'(3')-deoxyribonucleotidase (dNT-2)
0040657 497 2005-09-08 d1ltqa1 phosphatase domain of polynucleotide kinase
0051324 1005 2008-09-10 d1yj5a1 phosphatase domain of polynucleotide kinase
0047938 7747 2008-09-10 d1l6ra_ Predicted hydrolases Cof
0051120 2333 2008-09-10 d1xvia_ Predicted hydrolases Cof
0041356 1797 2005-09-08 d1nf2a_ Predicted hydrolases Cof
0050761 1034 2008-09-10 d1wzca1 Predicted hydrolases Cof
0043284 1901 2005-09-08 d1rkqa_ Predicted hydrolases Cof
0049302 7093 2008-09-10 d1s2oa1 Predicted hydrolases Cof
0052765 983 2008-09-10 d2fuea1 Predicted hydrolases Cof
0051800 2378 2008-09-10 d2amya1 Predicted hydrolases Cof
0049203 2936 2008-09-10 d1rlma_ Predicted hydrolases Cof
0048428 7391 2008-09-10 d1nrwa_ Predicted hydrolases Cof
0050690 7983 2008-09-10 d1wr8a_ Predicted hydrolases Cof
0051348 4841 2008-09-10 d1ymqa1 Predicted hydrolases Cof
0051888 1226 2008-09-10 d2b30a1 Predicted hydrolases Cof
0049197 1131 2008-09-10 d1rkua_ Homoserine kinase ThrH
0048300 73 2008-09-10 d1n8na_ Class B acid phosphatase, AphA
0051495 88 2008-09-10 d1z5ga1 Class B acid phosphatase, AphA
0049067 1904 2008-09-10 d1qyia_ Hypothetical protein MW1667 (SA1546)
0051416 1214 2008-09-10 d1yv9a1 NagD-like
0050211 2647 2008-09-10 d1vjra_ NagD-like
0050723 2037 2008-09-10 d1wvia_ NagD-like
0051387 1152 2008-09-10 d1ys9a1 NagD-like
0051280 2163 2008-09-10 d1ydfa1 NagD-like
0052115 1434 2008-09-10 d2c4na1 NagD-like
0044171 440 2005-09-08 d1u02a_ Trehalose-phosphatase
0049579 743 2008-09-10 d1ta0a_ NLI interacting factor-like phosphatase
0049814 7860 2008-09-10 d1u7pa_ Magnesium-dependent phosphatase-1, Mdp1
0051058 721 2008-09-10 d1xpja_ Hypothetical protein VC0232
0053956 3887 2010-05-31 d2gmwa1 Histidinol phosphatase-like
0054320 3932 2010-05-31 d2o2xa1 Histidinol phosphatase-like
0052740 5188 2008-09-10 d2fpra1 Histidinol phosphatase-like
0052665 1311 2008-09-10 d2feaa1 MtnX-like
0052186 5294 2008-09-10 d2cn1a1 Pyrimidine 5'-nucleotidase (UMPH-1)
0053744 600 2010-05-31 d2bdua1 Pyrimidine 5'-nucleotidase (UMPH-1)
0052850 2223 2008-09-10 d2g80a1 Enolase-phosphatase E1
0051632 453 2008-09-10 d1zs9a1 Enolase-phosphatase E1
0051956 111 2008-09-10 d2bdea1 5' nucleotidase-like
0053649 1368 2010-05-31 d1y8aa1 AF1437-like
0054355 366 2010-05-31 d2obba1 BT0820-like