SUPERFAMILY 1.75 HMM library and genome assignments server

Please note: Superfamily is currently under maintenance and some functionality may be limited. Please bear with us as we fix these problems.

beta-beta-alpha zinc fingers superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 91 SUPERFAMILY models representing the beta-beta-alpha zinc fingers superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0043978 80 2005-09-08 d1tf3a3 Classic zinc finger, C2H2
0052896 45 2008-09-10 d2ghfa2 Classic zinc finger, C2H2
0043305 67 2005-09-08 d1rmda1 Classic zinc finger, C2H2
0050111 82073 2008-09-10 d1va3a1 Classic zinc finger, C2H2
0052466 74558 2008-09-10 d2dlqa4 Classic zinc finger, C2H2
0048707 27103 2008-09-10 d1p7aa_ Classic zinc finger, C2H2
0052459 62 2008-09-10 d2dlka1 Classic zinc finger, C2H2
0045694 32076 2008-09-10 d1a1ha1 Classic zinc finger, C2H2
0052288 61 2008-09-10 d2ct1a1 Classic zinc finger, C2H2
0045294 656 2005-09-08 d2glia2 Classic zinc finger, C2H2
0051749 82679 2008-09-10 d2adra1 Classic zinc finger, C2H2
0045118 32766 2005-09-08 d1zfda_ Classic zinc finger, C2H2
0050860 32 2008-09-10 d1x6fa1 Classic zinc finger, C2H2
0053892 55413 2010-05-31 d2epqa1 Classic zinc finger, C2H2
0043982 15190 2005-09-08 d1tf6a4 Classic zinc finger, C2H2
0050784 49046 2008-09-10 d1x3ca1 Classic zinc finger, C2H2
0052920 538 2008-09-10 d2glia5 Classic zinc finger, C2H2
0043730 523 2005-09-08 d1srka_ Classic zinc finger, C2H2
0050622 22 2008-09-10 d1wjpa1 Classic zinc finger, C2H2
0052470 70359 2008-09-10 d2dmda2 Classic zinc finger, C2H2
0041311 1764 2005-09-08 d1ncsa_ Classic zinc finger, C2H2
0049818 34474 2008-09-10 d1u86a1 Classic zinc finger, C2H2
0052463 24 2008-09-10 d2dlqa1 Classic zinc finger, C2H2
0035441 7298 2005-09-08 d1bboa1 Classic zinc finger, C2H2
0045696 292 2008-09-10 d1a1ia2 Classic zinc finger, C2H2
0045296 30887 2005-09-08 d2glia4 Classic zinc finger, C2H2
0052206 22176 2008-09-10 d2cota2 Classic zinc finger, C2H2
0045152 142 2005-09-08 d2adra2 Classic zinc finger, C2H2
0050862 26488 2008-09-10 d1x6ha2 Classic zinc finger, C2H2
0053894 48500 2010-05-31 d2epsa1 Classic zinc finger, C2H2
0044260 30512 2005-09-08 d1ubdc2 Classic zinc finger, C2H2
0050841 41 2008-09-10 d1x5wa2 Classic zinc finger, C2H2
0043977 32694 2005-09-08 d1tf3a2 Classic zinc finger, C2H2
0050624 38 2008-09-10 d1wjpa3 Classic zinc finger, C2H2
0052895 72 2008-09-10 d2ghfa1 Classic zinc finger, C2H2
0042220 26994 2005-09-08 d1paaa_ Classic zinc finger, C2H2
0049956 39 2008-09-10 d1un6b3 Classic zinc finger, C2H2
0052465 35848 2008-09-10 d2dlqa3 Classic zinc finger, C2H2
0047831 242 2008-09-10 d1klra_ Classic zinc finger, C2H2
0052293 137 2008-09-10 d2ctda2 Classic zinc finger, C2H2
0045693 32037 2008-09-10 d1a1ga1 Classic zinc finger, C2H2
0052280 24871 2008-09-10 d2csha2 Classic zinc finger, C2H2
0045250 146 2005-09-08 d2drpa2 Classic zinc finger, C2H2
0045110 12155 2005-09-08 d1yuja_ Classic zinc finger, C2H2
0050859 69598 2008-09-10 d1x6ea2 Classic zinc finger, C2H2
0053891 25797 2010-05-31 d2eppa1 Classic zinc finger, C2H2
0043981 28907 2005-09-08 d1tf6a1 Classic zinc finger, C2H2
0052919 113 2008-09-10 d2glia1 Classic zinc finger, C2H2
0043689 33183 2005-09-08 d1sp2a_ Classic zinc finger, C2H2
0052469 30092 2008-09-10 d2dmda1 Classic zinc finger, C2H2
0040545 512 2005-09-08 d1llmc2 Classic zinc finger, C2H2
0049610 8345 2008-09-10 d1tf6a5 Classic zinc finger, C2H2
0052460 30930 2008-09-10 d2dlka2 Classic zinc finger, C2H2
0034826 750 2005-09-08 d1a1ia3 Classic zinc finger, C2H2
0045695 31801 2008-09-10 d1a1ia1 Classic zinc finger, C2H2
0052289 24877 2008-09-10 d2ct1a2 Classic zinc finger, C2H2
0045295 32642 2005-09-08 d2glia3 Classic zinc finger, C2H2
0052205 32818 2008-09-10 d2cota1 Classic zinc finger, C2H2
0045127 14005 2005-09-08 d1znfa_ Classic zinc finger, C2H2
0050861 33 2008-09-10 d1x6ha1 Classic zinc finger, C2H2
0053893 46988 2010-05-31 d2epra1 Classic zinc finger, C2H2
0044259 123 2005-09-08 d1ubdc1 Classic zinc finger, C2H2
0050840 41 2008-09-10 d1x5wa1 Classic zinc finger, C2H2
0053340 219 2008-09-10 d3znfa_ Classic zinc finger, C2H2
0043976 31238 2005-09-08 d1tf3a1 Classic zinc finger, C2H2
0050623 38 2008-09-10 d1wjpa2 Classic zinc finger, C2H2
0052471 34808 2008-09-10 d2dmda3 Classic zinc finger, C2H2
0049852 1778 2008-09-10 d1ubdc4 Classic zinc finger, C2H2
0052464 12 2008-09-10 d2dlqa2 Classic zinc finger, C2H2
0037351 808 2005-09-08 d1f2ig1 Classic zinc finger, C2H2
0045966 62173 2008-09-10 d1bhia_ Classic zinc finger, C2H2
0052292 132 2008-09-10 d2ctda1 Classic zinc finger, C2H2
0045656 750 2005-09-08 d7znfa_ Classic zinc finger, C2H2
0052279 62050 2008-09-10 d2csha1 Classic zinc finger, C2H2
0045249 62 2005-09-08 d2drpa1 Classic zinc finger, C2H2
0050944 82778 2008-09-10 d1xf7a_ Classic zinc finger, C2H2
0044261 32456 2005-09-08 d1ubdc3 Classic zinc finger, C2H2
0050858 78693 2008-09-10 d1x6ea1 Classic zinc finger, C2H2
0050630 99 2008-09-10 d1wjva1 C2HC finger
0037795 104 2005-09-08 d1fv5a_ C2HC finger
0037782 89 2005-09-08 d1fu9a_ C2HC finger
0050631 101 2008-09-10 d1wjva2 C2HC finger
0041429 12285 2005-09-08 d1njqa_ Plant C2H2 finger (QALGGH zinc finger)
0054743 59 2010-05-31 d2yrka1 HkH motif-containing C2H2 finger
0053677 1066 2010-05-31 d1zu1a1 HkH motif-containing C2H2 finger
0051621 651 2008-09-10 d1zr9a1 HkH motif-containing C2H2 finger
0054733 191 2010-05-31 d2vrda1 HkH motif-containing C2H2 finger
0053678 1094 2010-05-31 d1zu1a2 HkH motif-containing C2H2 finger
0050596 201 2008-09-10 d1wira_ variant C2H2 finger
0052290 324 2008-09-10 d2ct5a1 BED zinc finger
0054735 146 2010-05-31 d2vy4a1 CHHC finger