SUPERFAMILY 1.75 HMM library and genome assignments server

Riboflavin synthase domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 26 SUPERFAMILY models representing the Riboflavin synthase domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046305 1213 2008-09-10 d1ddga1 NADPH-cytochrome p450 reductase FAD-binding domain-like
0046685 1157 2008-09-10 d1f20a1 NADPH-cytochrome p450 reductase FAD-binding domain-like
0045794 1111 2008-09-10 d1amoa1 NADPH-cytochrome p450 reductase FAD-binding domain-like
0048947 1189 2008-09-10 d1qfza1 Ferredoxin reductase FAD-binding domain-like
0046600 1188 2008-09-10 d1ep3b1 Ferredoxin reductase FAD-binding domain-like
0041321 613 2005-09-08 d1ndha1 Ferredoxin reductase FAD-binding domain-like
0034954 562 2005-09-08 d1a8pa1 Ferredoxin reductase FAD-binding domain-like
0049710 3098 2008-09-10 d1tvca1 Ferredoxin reductase FAD-binding domain-like
0046758 1264 2008-09-10 d1fdra1 Ferredoxin reductase FAD-binding domain-like
0045224 442 2005-09-08 d2cnda1 Ferredoxin reductase FAD-binding domain-like
0040221 911 2005-09-08 d1krha1 Ferredoxin reductase FAD-binding domain-like
0038027 232 2005-09-08 d1gawa1 Ferredoxin reductase FAD-binding domain-like
0052010 1277 2008-09-10 d2bmwa1 Ferredoxin reductase FAD-binding domain-like
0047554 977 2008-09-10 d1jb9a1 Ferredoxin reductase FAD-binding domain-like
0038912 571 2005-09-08 d1i7pa1 Ferredoxin reductase FAD-binding domain-like
0049422 956 2008-09-10 d1sm4a1 Ferredoxin reductase FAD-binding domain-like
0042742 608 2005-09-08 d1qfja1 Ferredoxin reductase FAD-binding domain-like
0036118 598 2005-09-08 d1cqxa2 Ferredoxin reductase FAD-binding domain-like
0049949 1952 2008-09-10 d1umka1 Ferredoxin reductase FAD-binding domain-like
0046818 1032 2008-09-10 d1fnca1 Ferredoxin reductase FAD-binding domain-like
0038291 722 2005-09-08 d1gvha2 Ferredoxin reductase FAD-binding domain-like
0053271 1480 2008-09-10 d2piaa1 Ferredoxin reductase FAD-binding domain-like
0038920 502 2005-09-08 d1i8da1 Riboflavin synthase
0040334 502 2005-09-08 d1kzla2 Riboflavin synthase
0038921 502 2005-09-08 d1i8da2 Riboflavin synthase
0040333 502 2005-09-08 d1kzla1 Riboflavin synthase