SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

TorD-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 4 SUPERFAMILY models representing the TorD-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0043531 111 2005-09-08 d1s9ua_ TorD-like
0054349 604 2010-05-31 d2o9xa1 TorD-like
0041186 135 2005-09-08 d1n1ca_ TorD-like
0054130 155 2010-05-31 d2idga1 TorD-like