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Plant ANatomical entity (PAN): vascular system

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Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   plant anatomical entity [PO:0025131] <3>
+ + 2:   plant structure [PO:0009011] <13>(589|796) (590|352|108)
+ 1:   portion of plant tissue [PO:0009007] <57>(381|548) (383|235|78)
+ 1:   whole plant [PO:0000003] <7>(223|355) (227|170|61)
0:   vascular system [PO:0000034] <15>(25|31) (26|11|2)
- 1:   phyllome vascular system [PO:0025206] <6>(5|6) (5|2|0)
- 1:   portion of vascular tissue [PO:0009015] <5>(15|18) (16|7|2)
- 1:   shoot system vascular system [PO:0025205] <4>(10|10) (10|3|0)
- 1:   embryo vascular system [PO:0008011] <2>(1|1) (1|0|0)
- 1:   root vascular system [PO:0003011] <2>(1|2) (1|0|0)
- 1:   leaf lamina vascular system [PO:0000048] <1>(0|1) (0|0|0)
- 1:   shoot axis vascular system [PO:0000039] <1>(3|2) (3|1|0)
- 1:   anther vascular system [PO:0008013](0|0) (0|0|0)
- 1:   cotyledon vascular system [PO:0000035](2|4) (2|2|0)
- 1:   filament vascular system [PO:0008014](0|0) (0|0|0)
- 1:   fruit vascular system [PO:0008003](0|0) (0|0|0)
- 1:   hypocotyl vascular system [PO:0008015](0|0) (0|0|0)
- 1:   petiole vascular system [PO:0000052](0|0) (0|0|0)
- 1:   scutellar vascular system [PO:0008047](0|0) (0|0|0)
- 1:   stigma vascular system [PO:0008012](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.0000000000001161Direct
Trimeric LpxA-like enzymes0.00000000001435Direct
CheY-like0.0000000000181Direct
NAC domain0.000000002416Direct
Nucleotide-diphospho-sugar transferases0.00000002326Direct
Cupredoxins0.00000003391Direct
HD-domain/PDEase-like0.000001692Direct
Transducin (alpha subunit), insertion domain0.000009596Direct
RuBisCO, small subunit0.000009596Direct
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin0.00007399Direct
Subtilisin-like0.0001709Direct
Cullin repeat-like0.0001713Direct
Chlorophyll a-b binding protein0.0001764Direct
MFS general substrate transporter0.0004009Direct
Aquaporin-like0.0008401Direct
GroES-like0.0008461Direct
GST C-terminal domain-like0.002811Inherited
Tubulin C-terminal domain-like0.003405Inherited
Formate/glycerate dehydrogenase catalytic domain-like0.004792Inherited
Tubulin nucleotide-binding domain-like0.005347Inherited
ABC transporter transmembrane region0.167Inherited
Mitochondrial carrier0.202Inherited
Thioredoxin-like0.4018Inherited
POZ domain0.4785Inherited
Clavaminate synthase-like0.7719Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
MioX-like0Direct
Adenosine-5'phosphosulfate kinase (APS kinase)0Direct
Serine acetyltransferase0Direct
Multidomain cupredoxins0.00000000007943Direct
Galactosyltransferase LgtC0.0000000001993Direct
GlmU C-terminal domain-like0.000000000946Direct
NAC domain0.000000008853Direct
glucose-1-phosphate thymidylyltransferase0.00000002126Direct
Myb/SANT domain0.000001166Direct
GARP response regulators0.00000153Direct
CheY-related0.000003241Direct
Transducin (alpha subunit), insertion domain0.0000107Direct
Homeodomain0.00004436Direct
Chlorophyll a-b binding protein0.0001644Direct
Subtilases0.0002746Direct
Alcohol dehydrogenase-like, N-terminal domain0.0004061Direct
Alcohol dehydrogenase-like, C-terminal domain0.0004975Direct
Plant lipid-transfer and hydrophobic proteins0.001115Inherited
Aquaporin-like0.001158Inherited
Exocyst complex component0.001758Inherited
Formate/glycerate dehydrogenases, NAD-domain0.003857Inherited
Tubulin, C-terminal domain0.004079Inherited
Tubulin, GTPase domain0.006386Inherited
Glycosyl transferases group 10.01141Inherited
Glutathione S-transferase (GST), N-terminal domain0.01446Inherited
Glutathione S-transferase (GST), C-terminal domain0.0177Inherited
ABC transporter transmembrane region0.1529Inherited
BTB/POZ domain0.1536Inherited
Mitochondrial carrier0.2255Inherited
U-box0.4171Inherited
Penicillin synthase-like0.7287Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.00000000000008963Direct
Trimeric LpxA-like enzymes0.00000000001108Direct
CheY-like0.00000000001397Direct
NAC domain0.000000001868Direct
Nucleotide-diphospho-sugar transferases0.000000018Direct
Cupredoxins0.00000002626Direct
HD-domain/PDEase-like0.000001315Direct
Transducin (alpha subunit), insertion domain0.000007478Direct
RuBisCO, small subunit0.000007478Direct
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin0.00005791Direct
Subtilisin-like0.0001342Direct
Cullin repeat-like0.0001345Direct
Chlorophyll a-b binding protein0.0001386Direct
MFS general substrate transporter0.0003161Direct
Aquaporin-like0.0006648Direct
GroES-like0.0006696Direct
GST C-terminal domain-like0.002243Inherited
Tubulin C-terminal domain-like0.002723Inherited
Formate/glycerate dehydrogenase catalytic domain-like0.003844Inherited
Tubulin nucleotide-binding domain-like0.004295Inherited
Mannose-binding lectins0.009712Inherited
ABC transporter transmembrane region0.1488Inherited
Mitochondrial carrier0.182Inherited
Thioredoxin-like0.3776Inherited
POZ domain0.4541Inherited
Clavaminate synthase-like0.7496Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
49503,49503
  • 49503 - Cupredoxins
  • 49503 - Cupredoxins
  • 0.00000000003179Direct
    53448,51161
  • 53448 - Nucleotide-diphospho-sugar transferases
  • 51161 - Trimeric LpxA-like enzymes
  • 0.000000003821Direct
    52172,46689
  • 52172 - CheY-like
  • 46689 - Homeodomain-like
  • 0.00000001657Direct
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.000007478Direct
    50129,51735
  • 50129 - GroES-like
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0.0002638Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.002723Inherited
    52283,51735
  • 52283 - Formate/glycerate dehydrogenase catalytic domain-like
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0.002762Inherited
    52833,47616
  • 52833 - Thioredoxin-like
  • 47616 - GST C-terminal domain-like
  • 0.00397Inherited
    52540,90123
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.03751Inherited
    90123,52540
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.1386Inherited
    57850,48371
  • 57850 - RING/U-box
  • 48371 - ARM repeat
  • 0.1386Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52540,90123,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0325Inherited
    90123,52540,90123
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.0325Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)