SUPERFAMILY 1.75 HMM library and genome assignments server

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Plant ANatomical entity (PAN): root primordium

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Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   plant anatomical entity [PO:0025131] <3>
+ + + + 4:   plant structure [PO:0009011] <13>(589|796) (590|352|108)
+ + + 3:   portion of plant tissue [PO:0009007] <57>(381|548) (383|235|78)
+ + 2:   portion of meristem tissue [PO:0009013] <23>(122|205) (124|96|39)
+ 1:   primordium [PO:0025127] <4>(12|12) (12|3|0)
0:   root primordium [PO:0005029] <3>(6|6) (6|1|0)
- 1:   lateral root primordium [PO:0000016] <2>(6|6) (6|1|0)
- 1:   basal root primordium [PO:0025479](0|0) (0|0|0)
- 1:   shoot-borne root primordium [PO:0025480](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Lipoxigenase0.00000001925Direct
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin0.0000004155Direct
Lipase/lipooxygenase domain (PLAT/LH2 domain)0.0000008891Direct
Cullin repeat-like0.00000187Direct
Histone-fold0.000004706Direct
UDP-Glycosyltransferase/glycogen phosphorylase0.3879Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Plant lipoxigenases0.00000002487Direct
Lipoxigenase N-terminal domain0.00000002487Direct
Plant lipid-transfer and hydrophobic proteins0.0000002457Direct
Nucleosome core histones0.0000002457Direct
UDPGT-like0.000002312Direct
Exocyst complex component0.00002267Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Lipoxigenase0.0000000149Direct
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin0.0000003224Direct
Lipase/lipooxygenase domain (PLAT/LH2 domain)0.0000006905Direct
Cullin repeat-like0.000001453Direct
Histone-fold0.000003663Direct
UDP-Glycosyltransferase/glycogen phosphorylase0.3636Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
49723,48484
  • 49723 - Lipase/lipooxygenase domain (PLAT/LH2 domain)
  • 48484 - Lipoxigenase
  • 0.0000000149Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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