SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Plant structure DEvelopment stage (PDE): seedling development stage

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   plant structure development stage [PO:0009012] <7>
+ + + 3:   life of whole plant stage [PO:0025337] <2>(317|475) (317|215|77)
+ + + 3:   whole plant development stage [PO:0007033] <3>(321|479) (321|217|77)
+ + 2:   sporophyte development stage [PO:0028002] <5>(317|475) (317|215|77)
+ 1:   sporophyte vegetative stage [PO:0007134] <6>(316|474) (316|215|77)
0:   seedling development stage [PO:0007131] <4>(10|13) (10|10|5)
- 1:   cotyledon emergence stage [PO:0007049](0|0) (0|0|0)
- 1:   epicotyl emergence stage [PO:0007054](0|0) (0|0|0)
- 1:   hypocotyl emergence stage [PO:0007043](0|0) (0|0|0)
- 1:   seedling shoot emergence stage [PO:0007030](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Homodimeric domain of signal transducing histidine kinase0.0000000201Direct
GAF domain-like0.0000001125Direct
Histone-fold0.0000002535Direct
Skp1 dimerisation domain-like0.000001646Direct
Cupredoxins0.000009839Direct
Actin-like ATPase domain0.00001084Direct
2Fe-2S ferredoxin-like0.00005958Direct
Bet v1-like0.0001916Direct
Homeodomain-like0.0005921Direct
ABC transporter transmembrane region0.0009111Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Receiver domain of the ethylene receptor0Direct
Nucleosome core histones0.00000001105Direct
Multidomain cupredoxins0.0000000669Direct
2Fe-2S ferredoxin domains from multidomain proteins0.00000008546Direct
Homodimeric domain of signal transducing histidine kinase0.0000007673Direct
Actin/HSP700.0000008126Direct
Skp1 dimerisation domain-like0.000001001Direct
Dihydrodipicolinate reductase-like0.000003139Direct
Homeodomain0.000003301Direct
GAF domain0.000003318Direct
Glycosyl hydrolases family 35 catalytic domain0.00005114Direct
Inositol polyphosphate 5-phosphatase (IPP5)0.000352Direct
ABC transporter transmembrane region0.0007844Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homodimeric domain of signal transducing histidine kinase0.0000000169Direct
GAF domain-like0.00000009459Direct
Histone-fold0.0000002133Direct
Skp1 dimerisation domain-like0.000001386Direct
Cupredoxins0.000008284Direct
Actin-like ATPase domain0.000009124Direct
2Fe-2S ferredoxin-like0.00005023Direct
Bet v1-like0.0001617Direct
Homeodomain-like0.0005008Direct
ABC transporter transmembrane region0.0007717Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55781,47384
  • 55781 - GAF domain-like
  • 47384 - Homodimeric domain of signal transducing histidine kinase
  • 0Direct
    55961,55961
  • 55961 - Bet v1-like
  • 55961 - Bet v1-like
  • 0.0000000001104Direct
    49503,49503
  • 49503 - Cupredoxins
  • 49503 - Cupredoxins
  • 0.00000003583Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.000001386Direct
    47384,55874
  • 47384 - Homodimeric domain of signal transducing histidine kinase
  • 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
  • 0.00001588Direct
    51445,49785
  • 51445 - (Trans)glycosidases
  • 49785 - Galactose-binding domain-like
  • 0.00003611Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.00003772Direct
    52540,90123
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.00005519Direct
    49785,49785
  • 49785 - Galactose-binding domain-like
  • 49785 - Galactose-binding domain-like
  • 0.00006829Direct
    90123,52540
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0007717Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    55781,47384,55874
  • 55781 - GAF domain-like
  • 47384 - Homodimeric domain of signal transducing histidine kinase
  • 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
  • 0Direct
    51445,49785,49785
  • 51445 - (Trans)glycosidases
  • 49785 - Galactose-binding domain-like
  • 49785 - Galactose-binding domain-like
  • 0.00002529Direct
    52540,90123,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00005519Direct
    90123,52540,90123
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.00005519Direct
    54928,54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.00009024Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)